Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

NDI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N3C8doub1.32Å1.34ÅAromatic
N3C7sing1.32Å1.34ÅAromatic
C8C9sing1.38Å1.38ÅAromatic
C7C6doub1.39Å1.39ÅAromatic
C9C10doub1.39Å1.39ÅAromatic
C6C10sing1.39Å1.41ÅAromatic
C6N2sing1.40Å1.42Å
C10C11sing1.51Å1.51Å
O1C5doub1.21Å1.23Å
N2C5sing1.35Å1.35Å
C5C4sing1.51Å1.52Å
C3C2sing1.53Å1.52Å
C3N1sing1.47Å1.47Å
C4N1sing1.47Å1.46Å
C2Nsing1.47Å1.46Å
N1C12sing1.47Å1.48Å
NC13sing1.47Å1.47Å
NC1sing1.35Å1.35Å
C12C13sing1.53Å1.53Å
C1Odoub1.21Å1.21Å
C1Csing1.51Å1.49Å
C4H2sing1.09Å1.10Å
C4H3sing1.09Å1.10Å
C7H4sing1.08Å1.08Å
C8H5sing1.08Å1.08Å
C13H6sing1.09Å1.10Å
C13H7sing1.09Å1.10Å
N2H8sing0.97Å1.00Å
C11H9sing1.09Å1.10Å
C11H10sing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C9H12sing1.08Å1.08Å
C3H13sing1.09Å1.10Å
C3H14sing1.09Å1.10Å
C2H15sing1.09Å1.10Å
C2H16sing1.09Å1.10Å
C12H17sing1.09Å1.10Å
C12H18sing1.09Å1.10Å
CH19sing1.09Å1.10Å
CH20sing1.09Å1.10Å
CH21sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8N3C7117.4°121.8°
N3C8C9123.7°120.9°
N3C8H5118.2°119.5°
N3C7C6123.4°120.7°
N3C7H4118.3°119.7°
C8C9C10119.6°119.2°
C9C8H5118.1°119.6°
C8C9H12120.2°120.4°
C7C6C10118.6°119.0°
C7C6N2121.5°120.5°
C6C7H4118.3°119.7°
C9C10C6117.4°118.4°
C9C10C11120.5°120.8°
C10C9H12120.2°120.4°
C10C6N2119.9°120.5°
C6C10C11122.2°120.8°
C6N2C5127.1°120.0°
C6N2H8116.4°120.0°
C10C11H9109.5°109.5°
C10C11H10109.5°109.5°
C10C11H11109.5°109.4°
O1C5N2124.3°120.0°
O1C5C4121.2°120.0°
N2C5C4114.5°120.0°
C5N2H8116.5°120.0°
C5C4N1112.9°109.5°
C5C4H2108.6°109.5°
C5C4H3108.6°109.5°
C2C3N1111.0°109.4°
C3C2N109.8°108.5°
C2C3H13109.1°109.5°
C2C3H14109.1°109.5°
C3C2H15109.4°109.7°
C3C2H16109.4°109.6°
C3N1C4110.2°111.0°
C3N1C12110.0°111.3°
N1C3H13109.1°109.5°
N1C3H14109.1°109.5°
C4N1C12111.2°111.0°
N1C4H2108.6°109.5°
N1C4H3108.6°109.4°
C2NC13112.2°118.2°
C2NC1122.1°120.9°
NC2H15109.4°109.6°
NC2H16109.4°109.6°
N1C12C13110.7°109.3°
N1C12H17109.2°109.5°
N1C12H18109.1°109.5°
C13NC1125.5°120.9°
NC13C12110.0°108.5°
NC13H6109.4°109.6°
NC13H7109.3°109.8°
NC1O120.9°120.0°
NC1C118.2°120.0°
C12C13H6109.3°109.7°
C12C13H7109.4°109.6°
C13C12H17109.1°109.5°
C13C12H18109.2°109.5°
OC1C120.9°120.0°
C1CH19109.5°109.4°
C1CH20109.4°109.5°
C1CH21109.5°109.5°
H2C4H3109.5°109.5°
H6C13H7109.4°109.7°
H9C11H10109.5°109.5°
H9C11H11109.5°109.5°
H10C11H11109.5°109.4°
H13C3H14109.4°109.5°
H15C2H16109.5°109.8°
H17C12H18109.5°109.5°
H19CH20109.5°109.4°
H19CH21109.5°109.5°
H20CH21109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N3C8C9H5180.0°180.0°
C8N3C7C60.5°0.0°
N3C8C9C100.6°0.1°
C8N3C7H4179.5°180.0°
N3C8C9H12179.4°179.9°
C7N3C8C90.2°0.0°
N3C7C6H4180.0°180.0°
N3C7C6C100.8°0.0°
N3C7C6N2177.3°179.9°
C7N3C8H5179.8°180.0°
C8C9C10H12180.0°179.9°
C8C9C10C60.2°0.0°
C8C9C10C11179.6°180.0°
C7C6C10C90.4°0.0°
C7C6C10N2178.1°179.9°
C7C6C10C11179.8°180.0°
C7C6N2C564.9°24.7°
C7C6N2H8115.1°155.3°
C9C10C6C11179.8°180.0°
C9C10C6N2177.7°179.9°
C10C9C8H5179.4°180.0°
C9C10C11H990.1°90.0°
C9C10C11H10149.9°30.0°
C9C10C11H1129.9°150.0°
C10C6N2C5113.1°155.2°
C10C6C7H4179.2°180.0°
C10C6N2H866.8°24.8°
C6C10C11H990.1°90.0°
C6C10C11H1029.9°150.0°
C6C10C11H11149.9°30.0°
C6C10C9H12179.8°179.9°
N2C6C10C112.1°0.1°
C6N2C5O13.1°5.6°
C6N2C5H8180.0°180.0°
C6N2C5C4175.6°174.4°
N2C6C7H42.8°0.0°
C10C11H9H10120.0°120.0°
C10C11H9H11120.0°120.0°
C10C11H10H11120.0°120.0°
C11C10C9H120.4°0.1°
O1C5N2C4178.8°180.0°
O1C5C4N19.5°0.0°
O1C5C4H2111.0°120.0°
O1C5C4H3130.0°120.0°
O1C5N2H8176.9°174.4°
N2C5C4N1171.7°180.0°
N2C5C4H267.8°60.0°
N2C5C4H351.2°60.0°
C5C4N1C3104.7°65.7°
C5C4N1H2120.5°120.0°
C5C4N1H3120.5°120.0°
C5C4N1C12133.1°170.0°
C5C4H2H3118.4°120.0°
C4C5N2H84.4°5.6°
C2C3N1H13120.3°120.0°
C2C3N1H14120.2°120.0°
C2C3N1C4178.8°172.8°
C3C2NH15120.1°119.8°
C3C2NH16120.0°119.7°
C2C3N1C1258.3°63.1°
C3C2NC1356.6°51.2°
C3C2NC1119.0°128.9°
C2C3H13H14119.3°120.0°
C3C2H15H16119.9°120.5°
C3N1C4C12122.2°124.3°
N1C3C2N57.3°53.8°
C3N1C12C1357.7°63.1°
C3N1C4H2134.8°54.3°
C3N1C4H315.8°174.3°
N1C3H13H14119.3°120.1°
N1C3C2H15177.3°173.5°
N1C3C2H1662.7°65.9°
C3N1C12H17177.9°177.0°
C3N1C12H1862.5°56.9°
C4N1C12C13180.0°172.7°
N1C4H2H3118.5°120.0°
C4N1C3H1358.5°67.3°
C4N1C3H1461.0°52.8°
C4N1C12H1759.8°52.8°
C4N1C12H1859.8°67.3°
C2NC13C1175.4°180.0°
C2NC13C1256.3°51.2°
C2NC1O105.3°4.8°
C2NC1C74.4°175.1°
C2NC13H6176.3°68.5°
C2NC13H763.9°171.0°
NC2C3H13177.5°66.2°
NC2C3H1463.0°173.8°
NC2H15H16119.8°120.5°
N1C12C13N56.3°53.9°
N1C12C13H17120.2°119.9°
N1C12C13H18120.2°120.0°
C12N1C4H212.6°70.0°
C12N1C4H3106.4°50.0°
N1C12C13H6176.4°65.8°
N1C12C13H763.8°173.7°
C12N1C3H13178.5°56.9°
C12N1C3H1462.0°176.9°
N1C12H17H18119.4°120.1°
NC13C12H6120.1°119.7°
NC13C12H7120.1°119.8°
C13NC1O79.7°175.1°
C13NC1C100.6°4.9°
NC13H6H7119.8°120.6°
C13NC2H15176.6°170.9°
C13NC2H1663.5°68.5°
NC13C12H17176.5°173.8°
NC13C12H1863.9°66.1°
C1NC13C12119.2°128.9°
NC1OC179.7°179.9°
C1NC13H60.9°111.4°
C1NC13H7120.7°9.1°
C1NC2H151.0°9.1°
C1NC2H16120.9°111.4°
NC1CH19179.7°5.2°
NC1CH2060.3°114.7°
NC1CH2159.7°125.2°
C12C13H6H7119.8°120.4°
C13C12H17H18119.4°120.0°
OC1CH190.0°174.8°
OC1CH20120.0°65.2°
OC1CH21120.0°54.8°
C1CH19H20120.0°120.0°
C1CH19H21120.0°120.0°
C1CH20H21120.0°120.0°
H5C8C9H120.6°0.1°
H6C13C12H1763.4°54.1°
H6C13C12H1856.2°174.2°
H7C13C12H1756.4°66.4°
H7C13C12H18176.0°53.7°
H9C11H10H11120.0°120.0°
H13C3C2H1562.4°53.5°
H13C3C2H1657.5°174.1°
H14C3C2H1557.1°66.5°
H14C3C2H16177.0°54.1°
H19CH20H21120.0°120.0°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon