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NDD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.38Å1.41ÅAromatic
C1C8Asing1.40Å1.41ÅAromatic
C1H1sing1.08Å1.10Å
C2C3sing1.41Å1.40ÅAromatic
C2C2'sing1.48Å1.53Å
C3C4doub1.36Å1.39ÅAromatic
C3H3sing1.08Å1.10Å
C4C4Asing1.41Å1.40ÅAromatic
C4H4sing1.08Å1.10Å
C4AC5doub1.40Å1.40ÅAromatic
C4AC8Asing1.42Å1.40ÅAromatic
C5C6sing1.38Å1.40ÅAromatic
C5H5sing1.08Å1.10Å
C6C7doub1.41Å1.40ÅAromatic
C6C6'sing1.48Å1.52Å
C7C8sing1.36Å1.40ÅAromatic
C7H7sing1.08Å1.10Å
C8C8Adoub1.41Å1.40ÅAromatic
C8H8sing1.08Å1.10Å
C2'O1'doub1.21Å1.22Å
C2'O2'sing1.35Å1.33Å
O2'HO2sing0.97Å0.95Å
C6'O3'doub1.21Å1.23Å
C6'O4'sing1.35Å1.34Å
O4'HO4sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C8A121.9°119.5°
C2C1H1119.3°120.2°
C1C2C3116.6°120.5°
C1C2C2'120.1°119.8°
C8AC1H1118.8°120.2°
C1C8AC4A119.5°119.4°
C1C8AC8122.5°120.8°
C3C2C2'123.3°119.7°
C2C3C4122.6°120.8°
C2C3H3118.8°119.6°
C2C2'O1'114.7°120.0°
C2C2'O2'122.4°120.0°
C4C3H3118.6°119.6°
C3C4C4A119.7°120.0°
C3C4H4120.0°119.9°
C4AC4H4120.3°120.0°
C4C4AC5119.8°120.8°
C4C4AC8A119.7°119.7°
C5C4AC8A120.5°119.4°
C4AC5C6121.9°119.5°
C4AC5H5119.3°120.2°
C4AC8AC8118.0°119.7°
C6C5H5118.9°120.2°
C5C6C7117.1°120.5°
C5C6C6'122.4°119.8°
C7C6C6'120.4°119.7°
C6C7C8121.3°120.8°
C6C7H7119.3°119.6°
C6C6'O3'121.0°120.0°
C6C6'O4'116.5°120.0°
C8C7H7119.5°119.6°
C7C8C8A121.2°120.0°
C7C8H8119.5°119.9°
C8AC8H8119.3°120.0°
O1'C2'O2'122.9°120.0°
C2'O2'HO2122.4°120.0°
O3'C6'O4'122.4°120.0°
C6'O4'HO4116.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C8AH1180.0°179.9°
C1C2C3C2'179.9°179.8°
C1C2C3C41.2°0.2°
C1C2C3H3178.7°179.8°
C2C1C8AC4A0.0°0.4°
C2C1C8AC8177.4°179.8°
C1C2C2'O1'0.9°0.2°
C1C2C2'O2'179.4°179.8°
C8AC1C2C30.4°0.4°
C8AC1C2C2'179.7°179.8°
C1C8AC4AC40.3°0.2°
C1C8AC4AC5177.6°179.8°
C1C8AC4AC8177.5°179.8°
C1C8AC8C7176.0°179.8°
C1C8AC8H84.0°0.3°
H1C1C2C3179.6°179.8°
H1C1C2C2'0.3°0.1°
H1C1C8AC4A180.0°179.8°
H1C1C8AC82.6°0.1°
C2C3C4H3180.0°180.0°
C2C3C4C4A1.6°0.0°
C2C3C4H4178.4°180.0°
C3C2C2'O1'179.0°179.9°
C3C2C2'O2'0.5°0.0°
C2'C2C3C4178.9°180.0°
C2'C2C3H31.2°0.0°
C2C2'O1'O2'178.6°179.9°
C2C2'O2'HO2180.0°180.0°
C3C4C4AH4180.0°180.0°
C3C4C4AC5178.4°180.0°
C3C4C4AC8A1.1°0.0°
H3C3C4C4A178.3°180.0°
H3C3C4H41.6°0.0°
C4C4AC5C8A177.3°180.0°
C4C4AC5C6176.1°180.0°
C4C4AC5H53.9°0.0°
C4C4AC8AC8177.2°180.0°
H4C4C4AC51.6°0.0°
H4C4C4AC8A178.9°180.0°
C4AC5C6H5180.0°180.0°
C4AC5C6C70.7°0.0°
C4AC5C6C6'179.9°180.0°
C5C4AC8AC80.1°0.0°
C8AC4AC5C61.2°0.0°
C8AC4AC5H5178.8°180.0°
C4AC8AC8C71.5°0.0°
C4AC8AC8H8178.5°179.9°
C5C6C7C6'179.2°180.0°
C5C6C7C80.8°0.0°
C5C6C7H7179.2°180.0°
C5C6C6'O3'8.8°0.0°
C5C6C6'O4'171.8°180.0°
H5C5C6C7179.3°180.0°
H5C5C6C6'0.2°0.0°
C6C7C8H7180.0°180.0°
C6C7C8C8A2.0°0.0°
C6C7C8H8178.0°179.9°
C7C6C6'O3'170.3°180.0°
C7C6C6'O4'9.1°0.0°
C6'C6C7C8178.3°180.0°
C6'C6C7H71.7°0.0°
C6C6'O3'O4'179.4°180.0°
C6C6'O4'HO4180.0°180.0°
C7C8C8AH8180.0°179.9°
H7C7C8C8A178.0°180.0°
H7C7C8H82.0°0.1°
O1'C2'O2'HO21.6°0.1°
O3'C6'O4'HO40.6°0.0°

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PDB entries from 2024-07-24

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