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SummaryGeometryRelated PDB entries

ND8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O10C09doub1.22Å1.39Å
O11C09sing1.35Å1.22Å
C09C08sing1.47Å1.49Å
S12C08sing1.76Å1.73ÅAromatic
S12C04sing1.76Å1.69ÅAromatic
C08C07doub1.34Å1.37ÅAromatic
C04C03doub1.40Å1.37ÅAromatic
C04C05sing1.40Å1.37ÅAromatic
C07C05sing1.40Å1.49ÅAromatic
C03C02sing1.37Å1.41ÅAromatic
C05C06doub1.42Å1.42ÅAromatic
C02C01doub1.39Å1.35ÅAromatic
C06C01sing1.36Å1.39ÅAromatic
C01H1sing1.08Å1.08Å
C02H2sing1.08Å1.08Å
C03H3sing1.08Å1.08Å
C06H4sing1.08Å1.08Å
C07H5sing1.08Å1.08Å
O11H6sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O10C09O11122.4°120.0°
O10C09C08112.7°120.0°
O11C09C08124.8°120.0°
C09O11H6109.5°117.0°
C09C08S12119.8°124.7°
C09C08C07127.2°124.7°
C08S12C0493.4°91.6°
S12C08C07112.9°110.7°
S12C04C03126.5°130.5°
S12C04C05111.0°109.6°
C08C07C05108.9°115.6°
C08C07H5125.6°122.3°
C03C04C05122.5°119.9°
C04C03C02119.5°120.2°
C04C03H3120.2°119.9°
C04C05C07113.8°112.6°
C04C05C06117.7°118.5°
C07C05C06128.4°128.9°
C05C07H5125.6°122.1°
C03C02C01118.8°120.2°
C03C02H2120.6°119.9°
C02C03H3120.2°119.9°
C05C06C01118.7°120.5°
C05C06H4120.6°119.8°
C02C01C06122.4°120.7°
C02C01H1118.8°119.7°
C01C02H2120.6°119.9°
C06C01H1118.8°119.7°
C01C06H4120.6°119.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O10C09O11C08176.2°179.9°
O10C09C08S1220.2°180.0°
O10C09C08C07163.0°0.0°
O10C09O11H60.0°0.1°
O11C09C08S12156.3°0.0°
O11C09C08C0720.5°179.9°
C09C08S12C07177.2°180.0°
C09C08S12C04179.1°180.0°
C09C08C07C05178.7°180.0°
C09C08C07H51.4°0.1°
C08C09O11H6176.2°180.0°
C08S12C04C03176.5°180.0°
C08S12C04C051.4°0.0°
S12C08C07C051.7°0.0°
S12C08C07H5178.3°180.0°
C04S12C08C071.9°0.0°
S12C04C03C05177.7°180.0°
S12C04C05C070.7°0.0°
S12C04C03C02179.5°180.0°
S12C04C05C06179.1°179.7°
S12C04C03H30.6°0.0°
C08C07C05C040.7°0.0°
C08C07C05H5180.0°180.0°
C08C07C05C06177.5°179.7°
C03C04C05C07177.4°180.0°
C04C03C02H3180.0°180.0°
C03C04C05C061.1°0.3°
C04C03C02C011.8°0.0°
C04C03C02H2178.2°179.9°
C04C05C07C06178.2°179.7°
C05C04C03C021.8°0.0°
C04C05C06C013.1°0.6°
C05C04C03H3178.3°180.0°
C04C05C06H4176.9°180.0°
C04C05C07H5179.3°180.0°
C07C05C06C01178.8°179.8°
C07C05C06H41.2°0.3°
C03C02C01H2180.0°179.9°
C03C02C01C066.2°0.3°
C03C02C01H1173.8°180.0°
C05C06C01C026.8°0.6°
C05C06C01H4180.0°179.5°
C05C06C01H1173.2°179.8°
C06C05C07H52.4°0.3°
C02C01C06H1180.0°179.7°
C01C02C03H3178.2°180.0°
C02C01C06H4173.2°179.9°
C06C01C02H2173.8°179.8°
H1C01C02H26.2°0.1°
H1C01C06H46.8°0.3°
H2C02C03H31.8°0.0°

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PDB entries from 2024-07-17

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