ND7
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2A | PA | doub | 1.48Å | 1.52Å | |
| N3A | PA | sing | 1.68Å | 1.70Å | |
| PA | O5' | sing | 1.61Å | 1.59Å | |
| PA | O1A | sing | 1.61Å | 1.50Å | |
| O5' | C5' | sing | 1.43Å | 1.46Å | |
| C5' | C4' | sing | 1.53Å | 1.55Å | |
| O3' | C3' | sing | 1.43Å | 1.37Å | |
| C4' | C3' | sing | 1.55Å | 1.57Å | |
| C4' | O4' | sing | 1.44Å | 1.30Å | |
| C3' | C2' | sing | 1.54Å | 1.59Å | |
| O4' | C1' | sing | 1.44Å | 1.62Å | |
| C1' | C2' | sing | 1.54Å | 1.34Å | |
| C1' | N9 | sing | 1.46Å | 1.44Å | |
| C2' | O2' | sing | 1.43Å | 1.48Å | |
| N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.36Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.35Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.30Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
| C4 | C5 | sing | 1.40Å | 1.35Å | Aromatic |
| C2 | N1 | doub | 1.32Å | 1.34Å | Aromatic |
| N7 | C5 | sing | 1.35Å | 1.35Å | Aromatic |
| C5 | C6 | doub | 1.41Å | 1.38Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.31Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.45Å | |
| O1A | H1 | sing | 0.97Å | 0.95Å | |
| N3A | H2 | sing | 1.01Å | 1.00Å | |
| N3A | H3 | sing | 1.01Å | 1.00Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C4' | H6 | sing | 1.09Å | 1.10Å | |
| C3' | H7 | sing | 1.09Å | 1.10Å | |
| O3' | H8 | sing | 0.97Å | 0.95Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| O2' | H10 | sing | 0.97Å | 0.95Å | |
| C1' | H11 | sing | 1.09Å | 1.10Å | |
| C8 | H12 | sing | 1.08Å | 1.08Å | |
| C2 | H13 | sing | 1.08Å | 1.08Å | |
| N6 | H14 | sing | 0.97Å | 1.00Å | |
| N6 | H15 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2A | PA | N3A | 109.5° | 109.5° |
| O2A | PA | O5' | 105.2° | 109.4° |
| O2A | PA | O1A | 117.8° | 109.4° |
| N3A | PA | O5' | 106.6° | 109.5° |
| N3A | PA | O1A | 104.0° | 109.5° |
| PA | N3A | H2 | 109.5° | 111.0° |
| PA | N3A | H3 | 109.4° | 111.0° |
| O5' | PA | O1A | 113.3° | 109.4° |
| PA | O5' | C5' | 115.9° | 123.0° |
| PA | O1A | H1 | 109.5° | 114.0° |
| O5' | C5' | C4' | 105.1° | 109.5° |
| O5' | C5' | H4 | 110.5° | 109.5° |
| O5' | C5' | H5 | 110.6° | 109.5° |
| C5' | C4' | C3' | 108.5° | 110.4° |
| C5' | C4' | O4' | 106.1° | 110.4° |
| C4' | C5' | H4 | 110.6° | 109.5° |
| C4' | C5' | H5 | 110.5° | 109.5° |
| C5' | C4' | H6 | 109.3° | 110.3° |
| O3' | C3' | C4' | 112.7° | 110.5° |
| O3' | C3' | C2' | 117.7° | 110.5° |
| O3' | C3' | H7 | 110.0° | 110.6° |
| C3' | O3' | H8 | 109.5° | 114.0° |
| C3' | C4' | O4' | 110.4° | 104.8° |
| C4' | C3' | C2' | 101.0° | 104.0° |
| C3' | C4' | H6 | 109.1° | 110.3° |
| C4' | C3' | H7 | 107.5° | 110.4° |
| C4' | O4' | C1' | 107.4° | 105.3° |
| O4' | C4' | H6 | 113.2° | 110.5° |
| C3' | C2' | C1' | 105.2° | 104.1° |
| C3' | C2' | O2' | 110.3° | 110.5° |
| C2' | C3' | H7 | 107.3° | 110.6° |
| C3' | C2' | H9 | 109.2° | 110.5° |
| O4' | C1' | C2' | 105.9° | 104.8° |
| O4' | C1' | N9 | 104.7° | 110.4° |
| O4' | C1' | H11 | 107.3° | 110.5° |
| C2' | C1' | N9 | 117.4° | 110.4° |
| C1' | C2' | O2' | 108.4° | 110.6° |
| C1' | C2' | H9 | 113.0° | 110.6° |
| C2' | C1' | H11 | 111.2° | 110.4° |
| C1' | N9 | C8 | 127.4° | 126.3° |
| C1' | N9 | C4 | 125.9° | 126.3° |
| N9 | C1' | H11 | 109.7° | 110.3° |
| O2' | C2' | H9 | 110.6° | 110.5° |
| C2' | O2' | H10 | 109.5° | 114.0° |
| C8 | N9 | C4 | 106.7° | 107.4° |
| N9 | C8 | N7 | 110.3° | 110.0° |
| N9 | C8 | H12 | 124.8° | 125.1° |
| N9 | C4 | N3 | 131.3° | 134.9° |
| N9 | C4 | C5 | 107.4° | 106.0° |
| C4 | N3 | C2 | 119.1° | 120.6° |
| N3 | C4 | C5 | 121.3° | 119.1° |
| N3 | C2 | N1 | 121.0° | 122.5° |
| N3 | C2 | H13 | 119.5° | 118.7° |
| C8 | N7 | C5 | 107.2° | 109.4° |
| N7 | C8 | H12 | 124.9° | 124.9° |
| C4 | C5 | N7 | 108.3° | 107.1° |
| C4 | C5 | C6 | 117.8° | 118.2° |
| C2 | N1 | C6 | 121.7° | 121.2° |
| N1 | C2 | H13 | 119.5° | 118.8° |
| N7 | C5 | C6 | 133.9° | 134.7° |
| C5 | C6 | N1 | 119.2° | 118.5° |
| C5 | C6 | N6 | 120.3° | 120.7° |
| N1 | C6 | N6 | 120.6° | 120.8° |
| C6 | N6 | H14 | 109.5° | 120.0° |
| C6 | N6 | H15 | 109.4° | 119.9° |
| H2 | N3A | H3 | 109.5° | 111.0° |
| H4 | C5' | H5 | 109.5° | 109.4° |
| H14 | N6 | H15 | 109.4° | 120.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2A | PA | N3A | O5' | 113.4° | 120.0° |
| O2A | PA | N3A | O1A | 126.7° | 120.0° |
| O2A | PA | O5' | O1A | 130.0° | 119.9° |
| O2A | PA | O5' | C5' | 178.9° | 50.1° |
| O2A | PA | O1A | H1 | 0.0° | 60.0° |
| O2A | PA | N3A | H2 | 180.0° | 180.0° |
| O2A | PA | N3A | H3 | 60.0° | 56.0° |
| N3A | PA | O5' | O1A | 113.7° | 120.0° |
| N3A | PA | O5' | C5' | 62.7° | 70.0° |
| N3A | PA | O1A | H1 | 121.3° | 60.0° |
| PA | N3A | H2 | H3 | 120.0° | 124.0° |
| PA | O5' | C5' | C4' | 156.3° | 180.0° |
| O5' | PA | O1A | H1 | 123.4° | 180.0° |
| O5' | PA | N3A | H2 | 66.6° | 60.0° |
| O5' | PA | N3A | H3 | 53.4° | 64.0° |
| PA | O5' | C5' | H4 | 84.4° | 60.0° |
| PA | O5' | C5' | H5 | 37.0° | 59.9° |
| O1A | PA | O5' | C5' | 51.1° | 170.0° |
| O1A | PA | N3A | H2 | 53.3° | 60.0° |
| O1A | PA | N3A | H3 | 173.4° | 176.0° |
| O5' | C5' | C4' | H4 | 119.3° | 120.0° |
| O5' | C5' | C4' | H5 | 119.3° | 120.0° |
| O5' | C5' | C4' | C3' | 74.1° | 175.0° |
| O5' | C5' | C4' | O4' | 167.1° | 69.6° |
| O5' | C5' | H4 | H5 | 122.1° | 120.0° |
| O5' | C5' | C4' | H6 | 44.7° | 52.8° |
| C5' | C4' | C3' | O3' | 131.1° | 98.5° |
| C5' | C4' | C3' | O4' | 116.0° | 118.9° |
| C5' | C4' | C3' | H6 | 119.0° | 122.2° |
| C5' | C4' | O4' | H6 | 119.9° | 122.3° |
| C5' | C4' | C3' | C2' | 102.4° | 142.8° |
| C5' | C4' | O4' | C1' | 121.5° | 159.4° |
| C4' | C5' | H4 | H5 | 122.0° | 120.0° |
| C5' | C4' | C3' | H7 | 9.8° | 24.2° |
| O3' | C3' | C4' | C2' | 126.4° | 118.7° |
| O3' | C3' | C4' | H7 | 121.4° | 122.7° |
| O3' | C3' | C4' | O4' | 112.9° | 142.6° |
| O3' | C3' | C2' | H7 | 124.6° | 122.8° |
| O3' | C3' | C2' | C1' | 94.2° | 118.7° |
| O3' | C3' | C2' | O2' | 22.4° | 0.0° |
| O3' | C3' | C4' | H6 | 12.2° | 23.7° |
| O3' | C3' | C2' | H9 | 144.2° | 122.6° |
| C3' | C4' | O4' | H6 | 122.7° | 118.8° |
| C4' | C3' | C2' | H7 | 112.4° | 118.5° |
| C3' | C4' | O4' | C1' | 4.0° | 40.5° |
| C4' | C3' | C2' | C1' | 28.8° | 0.0° |
| C4' | C3' | C2' | O2' | 145.5° | 118.7° |
| C3' | C4' | C5' | H4 | 166.6° | 65.0° |
| C3' | C4' | C5' | H5 | 45.2° | 54.9° |
| C4' | C3' | O3' | H8 | 180.0° | 180.0° |
| C4' | C3' | C2' | H9 | 92.8° | 118.8° |
| O4' | C4' | C3' | C2' | 13.5° | 24.0° |
| C4' | O4' | C1' | C2' | 24.0° | 40.5° |
| C4' | O4' | C1' | N9 | 148.7° | 159.3° |
| O4' | C4' | C5' | H4 | 47.9° | 50.4° |
| O4' | C4' | C5' | H5 | 73.5° | 170.4° |
| O4' | C4' | C3' | H7 | 125.8° | 94.7° |
| C4' | O4' | C1' | H11 | 94.8° | 78.4° |
| C3' | C2' | C1' | O4' | 31.5° | 24.0° |
| C3' | C2' | C1' | O2' | 118.0° | 118.6° |
| C3' | C2' | C1' | H9 | 119.1° | 118.7° |
| C3' | C2' | C1' | N9 | 147.8° | 142.8° |
| C3' | C2' | O2' | H9 | 120.9° | 122.5° |
| C2' | C3' | C4' | H6 | 138.6° | 95.0° |
| C2' | C3' | O3' | H8 | 63.1° | 65.4° |
| C3' | C2' | O2' | H10 | 180.0° | 61.4° |
| C3' | C2' | C1' | H11 | 84.8° | 95.0° |
| O4' | C1' | C2' | N9 | 116.4° | 118.8° |
| O4' | C1' | C2' | H11 | 116.3° | 119.0° |
| O4' | C1' | N9 | H11 | 114.9° | 122.4° |
| O4' | C1' | C2' | O2' | 149.4° | 142.6° |
| O4' | C1' | N9 | C8 | 64.3° | 20.3° |
| O4' | C1' | N9 | C4 | 112.9° | 159.3° |
| C1' | O4' | C4' | H6 | 118.6° | 78.4° |
| O4' | C1' | C2' | H9 | 87.6° | 94.7° |
| C2' | C1' | N9 | H11 | 128.1° | 122.2° |
| C1' | C2' | O2' | H9 | 124.4° | 122.8° |
| C2' | C1' | N9 | C8 | 52.8° | 95.1° |
| C2' | C1' | N9 | C4 | 130.1° | 85.3° |
| C1' | C2' | C3' | H7 | 141.2° | 118.6° |
| C1' | C2' | O2' | H10 | 65.3° | 176.1° |
| N9 | C1' | C2' | O2' | 94.2° | 98.5° |
| C1' | N9 | C8 | C4 | 177.6° | 179.7° |
| C1' | N9 | C4 | N3 | 1.6° | 0.0° |
| C1' | N9 | C8 | N7 | 179.2° | 179.8° |
| C1' | N9 | C4 | C5 | 179.0° | 180.0° |
| N9 | C1' | C2' | H9 | 28.8° | 24.2° |
| C1' | N9 | C8 | H12 | 0.8° | 0.0° |
| O2' | C2' | C3' | H7 | 102.2° | 122.8° |
| O2' | C2' | C1' | H11 | 33.1° | 23.6° |
| C8 | N9 | C4 | N3 | 179.2° | 179.7° |
| N9 | C8 | N7 | H12 | 180.0° | 179.8° |
| C8 | N9 | C4 | C5 | 1.3° | 0.3° |
| N9 | C8 | N7 | C5 | 1.2° | 0.5° |
| C8 | N9 | C1' | H11 | 179.1° | 142.7° |
| N9 | C4 | N3 | C5 | 179.4° | 180.0° |
| N9 | C4 | N3 | C2 | 179.7° | 180.0° |
| C4 | N9 | C8 | N7 | 1.6° | 0.5° |
| N9 | C4 | C5 | N7 | 0.6° | 0.0° |
| N9 | C4 | C5 | C6 | 179.7° | 180.0° |
| C4 | N9 | C1' | H11 | 2.0° | 36.9° |
| C4 | N9 | C8 | H12 | 178.4° | 179.7° |
| C4 | N3 | C2 | N1 | 1.8° | 0.1° |
| N3 | C4 | C5 | N7 | 179.9° | 180.0° |
| N3 | C4 | C5 | C6 | 0.1° | 0.0° |
| C4 | N3 | C2 | H13 | 178.3° | 180.0° |
| C2 | N3 | C4 | C5 | 0.8° | 0.0° |
| N3 | C2 | N1 | H13 | 180.0° | 179.9° |
| N3 | C2 | N1 | C6 | 2.0° | 0.1° |
| C8 | N7 | C5 | C4 | 0.4° | 0.3° |
| C8 | N7 | C5 | C6 | 179.3° | 179.7° |
| C4 | C5 | N7 | C6 | 179.7° | 179.9° |
| C4 | C5 | C6 | N1 | 0.3° | 0.0° |
| C4 | C5 | C6 | N6 | 179.1° | 180.0° |
| C2 | N1 | C6 | C5 | 1.2° | 0.0° |
| C2 | N1 | C6 | N6 | 180.0° | 180.0° |
| N7 | C5 | C6 | N1 | 180.0° | 180.0° |
| N7 | C5 | C6 | N6 | 1.3° | 0.0° |
| C5 | N7 | C8 | H12 | 178.8° | 179.7° |
| C5 | C6 | N1 | N6 | 178.7° | 180.0° |
| C5 | C6 | N6 | H14 | 178.7° | 0.0° |
| C5 | C6 | N6 | H15 | 61.3° | 180.0° |
| C6 | N1 | C2 | H13 | 178.0° | 180.0° |
| N1 | C6 | N6 | H14 | 0.0° | 180.0° |
| N1 | C6 | N6 | H15 | 120.0° | 0.0° |
| C6 | N6 | H14 | H15 | 120.0° | 180.0° |
| H4 | C5' | C4' | H6 | 74.6° | 172.8° |
| H5 | C5' | C4' | H6 | 164.0° | 67.3° |
| H6 | C4' | C3' | H7 | 109.2° | 146.4° |
| H7 | C3' | O3' | H8 | 60.1° | 57.4° |
| H7 | C3' | C2' | H9 | 19.6° | 0.2° |
| H9 | C2' | O2' | H10 | 59.1° | 61.1° |
| H9 | C2' | C1' | H11 | 156.1° | 146.3° |
