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NCD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C6C61sing1.51Å1.55Å
C6N1sing1.46Å1.46Å
C6C5sing1.53Å1.51Å
C6H61sing1.09Å1.12Å
C61O61sing1.34Å1.26Å
C61O62doub1.21Å1.25Å
O61H611sing0.97Å0.95Å
N1C2sing1.35Å1.35Å
N1H11sing0.97Å1.02Å
C2O2doub1.22Å1.25Å
C2N3sing1.35Å1.32Å
N3H31sing0.97Å1.02Å
N3H32sing0.97Å1.02Å
C5C4sing1.51Å1.52Å
C5H51sing1.09Å1.11Å
C5H52sing1.09Å1.12Å
C4O4doub1.21Å1.27Å
C4O5sing1.34Å1.27Å
O5HO51sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C61C6N1109.0°109.5°
C61C6C5106.9°109.5°
C61C6H61112.8°109.5°
C6C61O61119.7°120.0°
C6C61O62122.0°120.1°
N1C6C5113.2°109.5°
N1C6H61106.5°109.4°
C6N1C2124.2°120.1°
C6N1H11106.9°120.0°
C5C6H61108.6°109.4°
C6C5C4115.5°109.5°
C6C5H51110.0°109.4°
C6C5H52110.0°109.5°
O61C61O62118.3°119.9°
C61O61H611119.7°120.1°
C2N1H11107.0°119.9°
N1C2O2120.7°119.9°
N1C2N3121.6°120.1°
O2C2N3117.7°120.0°
C2N3H31117.7°120.0°
C2N3H32121.6°120.0°
H31N3H32120.7°120.0°
C4C5H51110.0°109.5°
C4C5H52110.0°109.5°
C5C4O4121.3°120.0°
C5C4O5118.4°120.1°
H51C5H52100.2°109.4°
O4C4O5120.2°119.9°
C4O5HO51118.4°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C61C6N1C5118.8°120.1°
C61C6N1H61121.9°120.0°
C61C6C5H61121.9°120.0°
C6C61O61O62179.0°180.0°
C6C61O61H611180.0°180.0°
C61C6N1C2169.7°89.9°
C61C6N1H1165.0°90.0°
C61C6C5C4156.1°180.0°
C61C6C5H5178.6°60.0°
C61C6C5H5230.8°59.9°
N1C6C5H61118.0°120.0°
N1C6C61O61169.0°30.0°
N1C6C61O6210.1°150.0°
C6N1C2H11125.2°180.0°
C6N1C2O2171.5°0.0°
C6N1C2N38.0°180.0°
N1C6C5C483.9°60.0°
N1C6C5H5141.5°60.0°
N1C6C5H52150.9°180.0°
C5C6C61O6146.3°90.1°
C5C6C61O62132.8°90.0°
C5C6N1C271.4°150.0°
C5C6N1H1153.8°30.0°
C6C5C4H51125.3°120.0°
C6C5C4H52125.2°120.1°
C6C5H51H52115.8°120.0°
C6C5C4O425.5°0.1°
C6C5C4O5152.9°180.0°
H61C6C61O6173.0°150.0°
H61C6C61O62108.0°30.0°
H61C6N1C247.8°30.0°
H61C6N1H11173.1°150.0°
H61C6C5C434.1°60.0°
H61C6C5H51159.5°180.0°
H61C6C5H5291.1°60.0°
O62C61O61H6111.0°0.0°
N1C2O2N3179.5°179.9°
N1C2N3H310.5°180.0°
N1C2N3H32180.0°0.3°
H11N1C2O263.3°180.0°
H11N1C2N3117.2°0.1°
O2C2N3H31180.0°0.0°
O2C2N3H320.5°179.7°
C2N3H31H32179.6°179.7°
C4C5H51H52115.8°120.0°
C5C4O4O5178.4°180.0°
C5C4O5HO51180.0°179.9°
H51C5C4O4150.8°120.0°
H51C5C4O527.6°60.0°
H52C5C4O499.8°120.0°
H52C5C4O581.8°59.9°
O4C4O5HO511.6°0.0°

224201

PDB entries from 2024-08-28

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