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NCC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3PPsing1.61Å1.48Å
O3PH3Psing0.97Å0.95Å
PO2Psing1.61Å1.62Å
PO1Pdoub1.48Å1.49Å
PO5'sing1.61Å1.59Å
O2PC10sing1.43Å1.47Å
O5'C5'sing1.43Å1.45Å
C5'C4'sing1.53Å1.56Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.54Å
C4'H4'sing1.09Å1.12Å
O4'C1'sing1.44Å1.44Å
C1'N1sing1.46Å1.49Å
C1'C2'sing1.55Å1.54Å
C1'H1'sing1.09Å1.11Å
N1C6sing1.36Å1.38ÅAromatic
N1C2sing1.34Å1.39ÅAromatic
C6C5doub1.35Å1.42ÅAromatic
C6H6sing1.08Å1.10Å
C5C4sing1.41Å1.43ÅAromatic
C5H5sing1.08Å1.10Å
C4N4sing1.38Å1.37Å
C4N3doub1.33Å1.37ÅAromatic
N4HN41sing0.97Å1.02Å
N4HN42sing0.97Å1.02Å
N3C2sing1.33Å1.37ÅAromatic
C2O2doub1.22Å1.24Å
C2'O2'sing1.43Å1.42Å
C2'C3'sing1.55Å1.54Å
C2'H2'sing1.09Å1.11Å
O2'H1sing0.97Å0.95Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.12Å
O3'H2sing0.97Å0.95Å
C9O1Bsing1.34Å1.22Å
C9O1Adoub1.21Å1.33Å
C9C10sing1.51Å1.52Å
O1BH1Bsing0.97Å0.95Å
C10O6sing1.43Å1.46Å
C10C20sing1.53Å1.58Å
O6C12sing1.43Å1.46Å
C12C13sing1.53Å1.54Å
C12C16sing1.53Å1.59Å
C12H12sing1.09Å1.11Å
C13O7sing1.43Å1.43Å
C13C14sing1.53Å1.53Å
C13H13sing1.09Å1.11Å
O7HO7sing0.97Å0.95Å
C14O8sing1.43Å1.43Å
C14C15sing1.53Å1.53Å
C14H14sing1.09Å1.11Å
O8HO8sing0.97Å0.95Å
C15O9sing1.43Å1.43Å
C15H151sing1.09Å1.11Å
C15H152sing1.09Å1.11Å
O9HO9sing0.97Å0.95Å
C16N5sing1.46Å1.46Å
C16C19sing1.53Å1.56Å
C16H16sing1.09Å1.11Å
N5C17sing1.35Å1.45Å
N5HN5sing0.97Å1.02Å
C17O10doub1.21Å1.22Å
C17C18sing1.51Å1.50Å
C18H181sing1.09Å1.12Å
C18H182sing1.09Å1.11Å
C18H183sing1.09Å1.12Å
C19O4sing1.43Å1.44Å
C19C20sing1.53Å1.55Å
C19H19sing1.09Å1.11Å
O4HO4sing0.97Å0.95Å
C20H201sing1.09Å1.12Å
C20H202sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
PO3PH3P110.3°106.8°
O3PPO2P110.3°109.4°
O3PPO1P108.8°109.4°
O3PPO5'112.0°109.5°
O2PPO1P110.1°109.5°
O2PPO5'107.2°109.5°
PO2PC10127.8°106.8°
O1PPO5'108.4°109.5°
PO5'C5'126.2°106.8°
O2PC10C9109.0°109.3°
O2PC10O6108.3°109.4°
O2PC10C20112.0°109.4°
O5'C5'C4'107.0°109.5°
O5'C5'H5'1113.1°109.5°
O5'C5'H5'2113.1°109.5°
C4'C5'H5'1113.2°109.4°
C4'C5'H5'2113.2°109.5°
C5'C4'O4'106.3°109.9°
C5'C4'C3'108.5°109.9°
C5'C4'H4'111.8°109.8°
H5'1C5'H5'297.3°109.5°
O4'C4'C3'108.5°107.4°
O4'C4'H4'111.8°109.9°
C4'O4'C1'110.9°107.0°
C3'C4'H4'109.8°109.9°
C4'C3'C2'105.5°104.0°
C4'C3'O3'107.6°110.8°
C4'C3'H3'113.5°110.4°
O4'C1'N1114.6°110.7°
O4'C1'C2'107.7°103.5°
O4'C1'H1'109.1°110.6°
N1C1'C2'114.5°110.7°
N1C1'H1'101.4°110.5°
C1'N1C6121.0°119.8°
C1'N1C2118.9°119.8°
C2'C1'H1'109.2°110.6°
C1'C2'O2'112.0°111.0°
C1'C2'C3'105.6°102.1°
C1'C2'H2'112.1°110.9°
C6N1C2120.1°120.3°
N1C6C5121.1°119.3°
N1C6H6117.9°120.4°
N1C2N3119.4°121.1°
N1C2O2121.5°119.5°
C5C6H6121.0°120.3°
C6C5C4117.3°119.0°
C6C5H5121.2°120.6°
C4C5H5121.5°120.5°
C5C4N4120.5°120.2°
C5C4N3119.6°119.6°
N4C4N3119.9°120.2°
C4N4HN41120.5°120.0°
C4N4HN42108.3°120.0°
C4N3C2122.5°120.7°
HN41N4HN42108.3°120.0°
N3C2O2119.1°119.4°
O2'C2'C3'114.1°110.9°
O2'C2'H2'103.3°110.8°
C2'O2'H1111.9°106.9°
C3'C2'H2'109.9°111.0°
C2'C3'O3'110.3°110.5°
C2'C3'H3'110.9°110.5°
O3'C3'H3'109.0°110.4°
C3'O3'H2107.6°106.8°
O1BC9O1A120.9°120.0°
O1BC9C10124.0°120.0°
C9O1BH1B121.0°120.0°
O1AC9C10115.0°120.0°
C9C10O6108.4°109.4°
C9C10C20109.1°109.4°
O6C10C20109.8°109.8°
C10O6C12112.8°107.7°
C10C20C19109.8°109.0°
C10C20H201112.1°109.6°
C10C20H202112.1°109.6°
O6C12C13107.9°109.4°
O6C12C16110.7°109.8°
O6C12H12110.3°109.4°
C13C12C16111.4°109.4°
C13C12H12109.6°109.4°
C12C13O7108.8°109.5°
C12C13C14109.4°109.4°
C12C13H13110.2°109.4°
C16C12H12106.8°109.3°
C12C16N5111.2°109.5°
C12C16C19109.1°109.0°
C12C16H16108.5°109.6°
O7C13C14109.8°109.5°
O7C13H13109.6°109.5°
C13O7HO7108.8°106.7°
C14C13H13109.1°109.5°
C13C14O8110.0°109.5°
C13C14C15111.4°109.5°
C13C14H14107.5°109.5°
O8C14C15108.6°109.5°
O8C14H14110.4°109.4°
C14O8HO8109.9°106.7°
C15C14H14108.9°109.5°
C14C15O9108.7°109.5°
C14C15H151112.5°109.4°
C14C15H152112.5°109.4°
O9C15H151112.5°109.5°
O9C15H152112.5°109.5°
C15O9HO9108.7°106.8°
H151C15H15298.0°109.5°
N5C16C19109.5°109.5°
N5C16H16108.1°109.6°
C16N5C17114.4°120.0°
C16N5HN5123.0°120.1°
C19C16H16110.3°109.5°
C16C19O4110.9°109.6°
C16C19C20107.5°108.6°
C16C19H19110.4°109.6°
C17N5HN5122.5°120.0°
N5C17O10123.8°120.0°
N5C17C18116.9°120.0°
O10C17C18119.3°120.0°
C17C18H181116.9°109.4°
C17C18H182109.5°109.5°
C17C18H183109.5°109.4°
H181C18H182109.6°109.5°
H181C18H183109.5°109.5°
H182C18H183100.7°109.5°
O4C19C20111.1°109.8°
O4C19H19106.8°109.6°
C19O4HO4110.9°106.8°
C20C19H19110.2°109.6°
C19C20H201112.1°109.5°
C19C20H202112.1°109.5°
H201C20H20298.4°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3PPO2PO1P120.1°119.9°
O3PPO2PO5'122.2°120.0°
O3PPO1PO5'122.1°120.1°
O3PPO2PC10143.1°43.0°
O3PPO5'C5'57.3°60.0°
H3PO3PPO2P179.9°69.0°
H3PO3PPO1P59.2°171.0°
H3PO3PPO5'60.7°50.9°
O2PPO1PO5'116.9°120.0°
O2PPO5'C5'63.8°180.0°
PO2PC10C974.1°46.4°
PO2PC10O6168.1°73.4°
PO2PC10C2046.8°166.3°
O1PPO2PC1023.0°76.9°
O1PPO5'C5'177.4°60.0°
O5'PO2PC1094.7°163.0°
PO5'C5'C4'131.9°180.0°
PO5'C5'H5'16.6°60.0°
PO5'C5'H5'2102.8°60.0°
O2PC10C9O1B0.1°65.3°
O2PC10C9O1A179.5°114.7°
O2PC10C9O6117.7°119.8°
O2PC10C9C20122.6°119.8°
O2PC10O6C20122.6°120.1°
O2PC10O6C1263.1°52.5°
O2PC10C20C1961.1°58.8°
O2PC10C20H201173.7°61.0°
O2PC10C20H20264.2°178.7°
O5'C5'C4'H5'1125.3°120.0°
O5'C5'C4'H5'2125.3°120.0°
O5'C5'H5'1H5'2119.0°120.0°
O5'C5'C4'O4'82.9°61.7°
O5'C5'C4'C3'33.6°179.7°
O5'C5'C4'H4'154.8°59.3°
C4'C5'H5'1H5'2119.1°120.0°
C5'C4'O4'C3'116.5°119.5°
C5'C4'O4'H4'122.3°121.0°
C5'C4'C3'H4'122.4°121.0°
C5'C4'O4'C1'124.9°146.0°
C5'C4'C3'C2'115.3°121.5°
C5'C4'C3'O3'127.0°119.8°
C5'C4'C3'H3'6.3°2.8°
H5'1C5'C4'O4'151.8°58.3°
H5'1C5'C4'C3'91.7°59.7°
H5'1C5'C4'H4'29.5°179.3°
H5'2C5'C4'O4'42.3°178.3°
H5'2C5'C4'C3'158.9°60.3°
H5'2C5'C4'H4'80.0°60.7°
O4'C4'C3'H4'122.5°119.5°
C4'O4'C1'N1141.8°158.7°
C4'O4'C1'C2'13.0°40.1°
C4'O4'C1'H1'105.4°78.4°
O4'C4'C3'C2'0.2°1.9°
O4'C4'C3'O3'118.0°120.7°
O4'C4'C3'H3'121.4°116.7°
C3'C4'O4'C1'8.4°26.4°
C4'C3'C2'C1'7.2°21.0°
C4'C3'C2'O2'130.6°139.3°
C4'C3'C2'O3'115.9°118.9°
C4'C3'C2'H3'123.3°118.6°
C4'C3'C2'H2'113.9°97.2°
C4'C3'O3'H3'123.4°122.7°
C4'C3'O3'H2180.0°176.2°
H4'C4'O4'C1'112.8°93.1°
H4'C4'C3'C2'122.2°117.6°
H4'C4'C3'O3'4.5°1.1°
H4'C4'C3'H3'116.1°123.8°
O4'C1'N1C2'125.3°114.2°
O4'C1'N1H1'117.3°122.9°
O4'C1'C2'H1'118.3°118.5°
O4'C1'N1C624.5°121.5°
O4'C1'N1C2154.1°58.2°
O4'C1'C2'O2'137.1°155.3°
O4'C1'C2'C3'12.3°37.1°
O4'C1'C2'H2'107.3°81.2°
N1C1'C2'H1'112.9°122.9°
C1'N1C6C2178.5°179.7°
C1'N1C6C5178.8°179.9°
C1'N1C6H61.2°0.0°
C1'N1C2N3179.2°179.8°
C1'N1C2O21.7°0.4°
N1C1'C2'O2'94.1°86.1°
N1C1'C2'C3'141.1°155.7°
N1C1'C2'H2'21.5°37.5°
C2'C1'N1C6100.8°124.4°
C2'C1'N1C280.7°56.0°
C1'C2'O2'C3'119.9°112.7°
C1'C2'O2'H2'120.8°123.6°
C1'C2'C3'H2'121.1°118.2°
C1'C2'O2'H1180.0°180.0°
C1'C2'C3'O3'108.7°98.0°
C1'C2'C3'H3'130.5°139.5°
H1'C1'N1C6141.8°1.4°
H1'C1'N1C236.8°178.9°
H1'C1'C2'O2'18.8°36.8°
H1'C1'C2'C3'106.0°81.4°
H1'C1'C2'H2'134.4°160.3°
N1C6C5H6180.0°180.0°
N1C6C5C40.3°0.0°
N1C6C5H5179.7°180.0°
C6N1C2N30.7°0.6°
C6N1C2O2179.8°180.0°
C2N1C6C50.3°0.3°
C2N1C6H6179.7°179.7°
N1C2N3C40.9°0.6°
N1C2N3O2179.1°179.4°
C6C5C4H5180.0°180.0°
C6C5C4N4179.2°179.9°
C6C5C4N30.5°0.0°
H6C6C5C4179.7°180.0°
H6C6C5H50.3°0.0°
C5C4N4N3179.8°180.0°
C5C4N4HN41180.0°180.0°
C5C4N4HN4254.7°0.0°
C5C4N3C20.9°0.2°
H5C5C4N40.8°0.0°
H5C5C4N3179.5°180.0°
C4N4HN41HN42125.3°180.0°
N4C4N3C2178.9°179.8°
N3C4N4HN410.2°0.0°
N3C4N4HN42125.5°180.0°
C4N3C2O2179.9°180.0°
O2'C2'C3'H2'115.5°123.5°
O2'C2'C3'O3'14.7°20.3°
O2'C2'C3'H3'106.1°102.2°
C3'C2'O2'H160.0°67.3°
C2'C3'O3'H3'122.0°122.6°
C2'C3'O3'H265.4°61.4°
H2'C2'O2'H159.2°56.4°
H2'C2'C3'O3'130.2°143.9°
H2'C2'C3'H3'9.4°21.4°
H3'C3'O3'H256.6°61.1°
O1BC9O1AC10179.4°180.0°
O1BC9C10O6117.6°174.9°
O1BC9C10C20122.8°54.5°
O1AC9O1BH1B180.0°0.0°
O1AC9C10O661.7°5.1°
O1AC9C10C2057.9°125.4°
C10C9O1BH1B0.7°179.9°
C9C10O6C20119.2°120.1°
C9C10O6C12178.7°172.3°
C9C10C20C19178.1°178.6°
C9C10C20H20152.8°58.8°
C9C10C20H20256.7°61.5°
C10O6C12C13178.5°172.4°
C10O6C12C1659.4°67.5°
C10O6C12H1258.7°52.5°
O6C10C20C1959.3°61.3°
O6C10C20H20165.9°178.9°
O6C10C20H202175.4°58.6°
C20C10O6C1259.5°67.6°
C10C20C19C1658.8°53.7°
C10C20C19O4179.7°173.6°
C10C20C19H201125.2°119.9°
C10C20C19H202125.3°119.9°
C10C20C19H1961.6°66.0°
C10C20H201H202118.0°120.3°
O6C12C13C16121.8°120.3°
O6C12C13H12120.2°119.9°
O6C12C16H12120.2°120.1°
O6C12C13O743.8°55.2°
O6C12C13C1476.1°64.8°
O6C12C13H13164.0°175.3°
O6C12C16N5178.9°179.0°
O6C12C16C1958.0°61.1°
O6C12C16H1662.3°58.7°
C13C12C16H12119.7°119.8°
C12C13O7C14119.6°120.0°
C12C13O7H13120.5°120.0°
C12C13C14H13120.6°119.9°
C12C13O7HO7180.0°60.0°
C12C13C14O860.8°64.1°
C12C13C14C15178.8°175.9°
C12C13C14H1459.5°55.9°
C13C12C16N560.9°58.9°
C13C12C16C19178.1°178.8°
C13C12C16H1657.9°61.4°
C16C12C13O777.9°65.1°
C16C12C13C14162.1°174.9°
C16C12C13H1342.3°54.9°
C12C16N5C19120.7°119.6°
C12C16N5H16119.1°120.2°
C12C16C19H16119.1°119.9°
C12C16N5C17122.9°150.2°
C12C16N5HN557.1°29.7°
C12C16C19O4179.3°173.6°
C12C16C19C2057.7°53.7°
C12C16C19H1962.6°66.1°
H12C12C13O7164.1°175.1°
H12C12C13C1444.1°55.1°
H12C12C13H1375.8°64.8°
H12C12C16N558.8°60.9°
H12C12C16C1962.2°58.9°
H12C12C16H16177.6°178.8°
O7C13C14H13120.2°120.0°
O7C13C14O8179.9°175.9°
O7C13C14C1559.5°55.8°
O7C13C14H1459.8°64.2°
C14C13O7HO760.3°60.0°
C13C14O8C15122.2°120.0°
C13C14O8H14118.5°120.0°
C13C14C15H14118.5°120.1°
C13C14O8HO8180.0°60.0°
C13C14C15O9114.4°180.0°
C13C14C15H15110.9°59.9°
C13C14C15H152120.4°60.0°
H13C13O7HO759.5°180.0°
H13C13C14O859.8°55.8°
H13C13C14C1560.7°64.2°
H13C13C14H14179.9°175.8°
O8C14C15H14120.3°119.9°
O8C14C15O9124.4°59.9°
O8C14C15H151110.4°180.0°
O8C14C15H1520.9°60.0°
C15C14O8HO857.8°60.0°
C14C15O9H151125.2°120.0°
C14C15O9H152125.3°119.9°
C14C15H151H152118.5°119.9°
C14C15O9HO9180.0°179.9°
H14C14O8HO861.5°180.0°
H14C14C15O94.1°60.0°
H14C14C15H151129.3°60.1°
H14C14C15H152121.1°179.9°
O9C15H151H152118.4°120.0°
H151C15O9HO954.8°60.0°
H152C15O9HO954.8°60.0°
N5C16C19H16118.9°120.2°
C16N5C17HN5180.0°179.9°
C16N5C17O100.1°0.1°
C16N5C17C18179.9°180.0°
N5C16C19O458.7°66.5°
N5C16C19C20179.6°173.5°
N5C16C19H1959.4°53.8°
C19C16N5C17116.4°90.2°
C19C16N5HN563.7°89.9°
C16C19O4C20119.5°119.3°
C16C19O4H19120.3°120.3°
C16C19C20H19120.3°119.7°
C16C19O4HO4180.0°180.0°
C16C19C20H20166.5°173.6°
C16C19C20H202176.0°66.2°
H16C16N5C173.9°30.0°
H16C16N5HN5176.1°149.9°
H16C16C19O460.1°53.7°
H16C16C19C2061.5°66.2°
H16C16C19H19178.3°174.0°
N5C17O10C18180.0°179.9°
N5C17C18H181180.0°180.0°
N5C17C18H18254.7°60.0°
N5C17C18H18354.8°60.0°
HN5N5C17O10179.9°180.0°
HN5N5C17C180.1°0.1°
O10C17C18H1810.0°0.1°
O10C17C18H182125.3°120.0°
O10C17C18H183125.2°120.0°
C17C18H181H182125.3°120.0°
C17C18H181H183125.2°119.9°
C17C18H182H183115.2°120.0°
H181C18H182H183115.3°120.0°
O4C19C20H19118.2°120.5°
O4C19C20H20155.0°66.6°
O4C19C20H20254.5°53.6°
C20C19O4HO460.5°60.7°
C19C20H201H202118.0°120.2°
H19C19O4HO459.7°59.8°
H19C19C20H201173.2°53.9°
H19C19C20H20263.7°174.1°

224931

PDB entries from 2024-09-11

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