Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

NBY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O9N3doub1.22Å1.20Å
O10N3sing1.22Å1.24Å
N3C12sing1.48Å1.40Å
C12C13doub1.38Å1.47ÅAromatic
C12C11sing1.38Å1.45ÅAromatic
C13C14sing1.38Å1.45ÅAromatic
C11C10doub1.38Å1.43ÅAromatic
C14C9doub1.40Å1.45ÅAromatic
C10C9sing1.40Å1.45ÅAromatic
C9C8sing1.48Å1.52Å
C8N2sing1.35Å1.32Å
C8O8doub1.22Å1.24Å
N2C7sing1.35Å1.41Å
C7O7doub1.22Å1.25Å
C7N1sing1.35Å1.33Å
N1C1sing1.46Å1.46Å
O2C2sing1.43Å1.44Å
C1C2sing1.53Å1.57Å
C1O5sing1.43Å1.48Å
C2C3sing1.53Å1.56Å
O5C5sing1.43Å1.47Å
C3O3sing1.43Å1.44Å
C3C4sing1.53Å1.55Å
C5C4sing1.53Å1.58Å
C5C6sing1.53Å1.57Å
C4O4sing1.43Å1.45Å
C6O6sing1.43Å1.46Å
C1H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
O2HO2sing0.97Å0.95Å
C3H3sing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
C4H4sing1.09Å1.10Å
O4HO4sing0.97Å0.95Å
C5H5sing1.09Å1.10Å
C6H61sing1.09Å1.10Å
C6H62sing1.09Å1.10Å
O6HO6sing0.97Å0.95Å
N1HN1sing0.97Å1.00Å
N2HN2sing0.97Å1.00Å
C10H10sing1.08Å1.08Å
C11H11sing1.08Å1.08Å
C13H13sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O9N3O10119.4°120.0°
O9N3C12120.6°120.0°
O10N3C12120.1°120.0°
N3C12C13121.6°119.9°
N3C12C11121.1°119.8°
C13C12C11117.3°120.3°
C12C13C14121.5°120.1°
C12C13H13119.3°119.9°
C12C11C10121.2°120.2°
C12C11H11119.4°120.0°
C13C14C9120.1°119.9°
C14C13H13119.3°119.9°
C13C14H14120.0°120.0°
C11C10C9121.2°119.8°
C11C10H10119.4°120.1°
C10C11H11119.4°119.9°
C14C9C10118.8°119.7°
C14C9C8120.9°120.1°
C9C14H14119.9°120.1°
C10C9C8120.3°120.2°
C9C10H10119.4°120.1°
C9C8N2121.0°120.0°
C9C8O8117.4°120.0°
N2C8O8121.6°120.0°
C8N2C7122.2°120.0°
C8N2HN2118.9°120.0°
N2C7O7119.2°120.0°
N2C7N1120.2°120.1°
C7N2HN2118.9°120.0°
O7C7N1120.6°120.0°
C7N1C1119.8°120.1°
C7N1HN1120.1°119.9°
N1C1C2109.7°109.5°
N1C1O5109.8°109.5°
N1C1H1109.7°109.5°
C1N1HN1120.1°120.0°
O2C2C1111.1°109.5°
O2C2C3110.5°109.6°
O2C2H2107.3°109.6°
C2O2HO2109.5°114.0°
C2C1O5111.2°109.5°
C1C2C3108.4°109.1°
C2C1H1108.3°109.5°
C1C2H2109.5°109.5°
C1O5C5112.7°114.1°
O5C1H1108.2°109.5°
C2C3O3110.2°109.5°
C2C3C4108.9°109.0°
C3C2H2110.1°109.5°
C2C3H3110.0°109.5°
O5C5C4110.2°109.4°
O5C5C6109.6°109.5°
O5C5H5109.5°109.5°
O3C3C4111.1°109.6°
O3C3H3107.7°109.6°
C3O3HO3109.5°114.0°
C3C4C5110.2°109.2°
C3C4O4111.0°109.5°
C4C3H3109.0°109.6°
C3C4H4108.0°109.6°
C4C5C6111.3°109.5°
C5C4O4109.9°109.5°
C5C4H4109.2°109.6°
C4C5H5107.8°109.5°
C5C6O6109.9°109.5°
C6C5H5108.4°109.5°
C5C6H61109.3°109.5°
C5C6H62109.2°109.4°
O4C4H4108.4°109.5°
C4O4HO4109.5°113.9°
O6C6H61109.3°109.5°
O6C6H62109.2°109.4°
C6O6HO6109.5°114.0°
H61C6H62109.8°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O9N3O10C12179.9°179.9°
O9N3C12C130.2°0.1°
O9N3C12C11179.9°179.7°
O10N3C12C13179.9°180.0°
O10N3C12C110.2°0.2°
N3C12C13C11179.7°179.8°
N3C12C13C14179.8°180.0°
N3C12C11C10179.8°179.7°
N3C12C11H110.2°0.3°
N3C12C13H130.2°0.2°
C12C13C14H13180.0°179.8°
C13C12C11C100.0°0.1°
C12C13C14C90.2°0.5°
C13C12C11H11180.0°179.9°
C12C13C14H14179.8°180.0°
C11C12C13C140.0°0.2°
C12C11C10H11180.0°180.0°
C12C11C10C90.2°0.0°
C12C11C10H10179.8°179.9°
C11C12C13H13180.0°180.0°
C13C14C9H14180.0°179.5°
C13C14C9C100.3°0.5°
C13C14C9C8179.5°179.7°
C11C10C9C140.3°0.2°
C11C10C9H10180.0°180.0°
C11C10C9C8179.5°180.0°
C14C9C10C8179.8°179.8°
C14C9C8N20.1°0.3°
C14C9C8O8179.8°179.7°
C14C9C10H10179.7°179.8°
C9C14C13H13179.8°179.7°
C10C9C8N2179.9°180.0°
C10C9C8O80.0°0.1°
C9C10C11H11179.8°180.0°
C10C9C14H14179.7°180.0°
C9C8N2O8179.9°180.0°
C9C8N2C7179.2°179.9°
C9C8N2HN20.8°0.0°
C8C9C10H100.5°0.0°
C8C9C14H140.5°0.2°
C8N2C7HN2180.0°179.9°
C8N2C7O7179.8°0.1°
C8N2C7N10.6°180.0°
O8C8N2C70.7°0.0°
O8C8N2HN2179.3°180.0°
N2C7O7N1179.6°179.9°
N2C7N1C1179.5°180.0°
N2C7N1HN10.5°0.1°
O7C7N1C10.1°0.1°
O7C7N1HN1179.9°180.0°
O7C7N2HN20.2°180.0°
C7N1C1HN1180.0°179.9°
C7N1C1C2126.1°145.0°
C7N1C1O5111.5°95.0°
C7N1C1H17.3°25.0°
N1C7N2HN2179.4°0.1°
N1C1C2O258.5°62.4°
N1C1C2O5121.6°120.0°
N1C1C2H1119.7°120.0°
N1C1O5H1119.7°120.0°
N1C1C2C3180.0°177.6°
N1C1O5C5179.4°178.9°
N1C1C2H259.9°57.8°
O2C2C1C3121.6°119.9°
O2C2C1H2118.4°120.2°
O2C2C1O5179.9°177.5°
O2C2C3H2118.4°120.3°
O2C2C3O357.9°63.3°
O2C2C3C4180.0°176.9°
O2C2C1H161.2°57.5°
O2C2C3H360.6°56.9°
C2C1O5H1118.8°120.0°
C1C2C3H2119.7°119.8°
C2C1O5C559.1°61.1°
C1C2C3O3179.9°176.8°
C1C2C3C458.0°57.0°
C1C2O2HO2115.0°60.0°
C1C2C3H361.3°63.0°
C2C1N1HN153.9°35.1°
O5C1C2C358.4°57.6°
C1O5C5C457.4°61.1°
C1O5C5C6179.7°178.9°
O5C1C2H261.7°62.3°
C1O5C5H561.0°58.9°
O5C1N1HN168.5°85.0°
C2C3O3C4120.8°119.5°
C2C3O3H3119.9°120.1°
C2C3C4H3120.0°119.9°
C2C3C4C558.1°57.0°
C2C3C4O4179.9°176.9°
C3C2C1H160.3°62.4°
C3C2O2HO25.4°179.7°
C2C3O3HO3154.6°60.0°
C2C3C4H461.2°63.0°
O5C5C4C357.1°57.6°
O5C5C4C6121.9°120.0°
O5C5C4H5119.4°120.0°
O5C5C6H5119.4°120.0°
O5C5C4O4179.8°177.5°
O5C5C6O664.2°64.9°
C5O5C1H159.7°58.9°
O5C5C4H461.5°62.4°
O5C5C6H6155.8°175.0°
O5C5C6H62176.0°55.0°
O3C3C4H3118.5°120.3°
O3C3C4C5179.6°176.9°
O3C3C4O458.4°63.3°
O3C3C2H260.4°57.0°
O3C3C4H460.3°56.8°
C3C4C5O4122.7°119.9°
C3C4C5H4118.5°120.0°
C3C4C5C6178.9°177.6°
C3C4O4H4118.5°120.2°
C4C3C2H261.7°62.9°
C4C3O3HO333.8°179.5°
C3C4O4HO4147.1°60.0°
C3C4C5H562.4°62.3°
C4C5C6H5118.4°120.0°
C5C4O4H4119.3°120.2°
C4C5C6O658.0°175.1°
C5C4C3H361.9°62.9°
C5C4O4HO490.7°179.7°
C4C5C6H61178.0°55.0°
C4C5C6H6261.8°65.0°
C6C5C4O458.4°62.5°
C5C6O6H61120.0°120.1°
C5C6O6H62119.8°119.9°
C6C5C4H460.4°57.6°
C5C6H61H62119.8°119.9°
C5C6O6HO661.9°180.0°
O4C4C3H360.1°57.0°
O4C4C5H560.3°57.5°
O6C6C5H5176.3°55.1°
O6C6H61H62119.8°120.0°
H1C1C2H2179.6°177.7°
H1C1N1HN1172.8°155.1°
H2C2O2HO2125.4°60.1°
H2C2C3H3179.0°177.2°
H3C3O3HO385.5°60.2°
H3C3C4H4178.8°177.1°
H4C4O4HO428.5°60.2°
H4C4C5H5179.1°177.6°
H5C5C6H6163.7°65.0°
H5C5C6H6256.5°175.0°
H61C6O6HO658.1°59.9°
H62C6O6HO6178.3°60.1°
H10C10C11H110.2°0.1°
H13C13C14H140.2°0.2°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon