NB8
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2P | P | sing | 1.61Å | 1.51Å | |
| P | O1P | doub | 1.48Å | 1.50Å | |
| P | O3P | sing | 1.61Å | 1.64Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| O3P | C | sing | 1.34Å | 1.47Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | CA | sing | 1.51Å | 1.52Å | |
| CA | N | sing | 1.47Å | 1.45Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CB | CG | sing | 1.51Å | 1.53Å | |
| CG | OD1 | doub | 1.21Å | 1.22Å | |
| CG | ND2 | sing | 1.35Å | 1.33Å | |
| ND2 | OAJ | sing | 1.42Å | 1.39Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.49Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C1' | N9 | sing | 1.47Å | 1.47Å | |
| N9 | C4 | sing | 1.37Å | 1.33Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.33Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.36Å | Aromatic |
| C4 | C5 | doub | 1.41Å | 1.37Å | Aromatic |
| N3 | C2 | doub | 1.32Å | 1.34Å | Aromatic |
| C2 | N1 | sing | 1.32Å | 1.33Å | Aromatic |
| N1 | C6 | doub | 1.33Å | 1.32Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.35Å | |
| C6 | C5 | sing | 1.41Å | 1.47Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.34Å | Aromatic |
| O2P | H2P | sing | 0.97Å | 0.95Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| N | HN1 | sing | 1.01Å | 1.00Å | |
| N | HN2 | sing | 1.01Å | 1.00Å | |
| CB | HB1C | sing | 1.09Å | 1.10Å | |
| CB | HB2C | sing | 1.09Å | 1.10Å | |
| ND2 | HD2 | sing | 0.97Å | 1.00Å | |
| OAJ | HAJ | sing | 0.97Å | 0.95Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HB | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HC | sing | 0.97Å | 0.95Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N6 | H61N | sing | 0.97Å | 1.00Å | |
| N6 | H62N | sing | 0.97Å | 1.00Å | |
| N7 | C8 | doub | 1.30Å | 1.36Å | Aromatic |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2P | P | O1P | 116.0° | 109.5° |
| O2P | P | O3P | 113.3° | 109.5° |
| O2P | P | O5' | 107.1° | 109.4° |
| P | O2P | H2P | 109.5° | 114.0° |
| O1P | P | O3P | 103.8° | 109.5° |
| O1P | P | O5' | 116.8° | 109.5° |
| O3P | P | O5' | 98.5° | 109.4° |
| P | O3P | C | 124.0° | 117.0° |
| P | O5' | C5' | 120.4° | 123.0° |
| O3P | C | O | 119.6° | 120.0° |
| O3P | C | CA | 118.7° | 120.0° |
| O | C | CA | 121.7° | 120.0° |
| C | CA | N | 112.3° | 109.5° |
| C | CA | CB | 110.0° | 109.5° |
| C | CA | HA | 107.2° | 109.4° |
| N | CA | CB | 109.5° | 109.5° |
| N | CA | HA | 107.7° | 109.4° |
| CA | N | HN1 | 109.5° | 111.0° |
| CA | N | HN2 | 109.5° | 111.0° |
| CA | CB | CG | 110.9° | 109.5° |
| CB | CA | HA | 110.1° | 109.5° |
| CA | CB | HB1C | 109.0° | 109.4° |
| CA | CB | HB2C | 108.7° | 109.5° |
| CB | CG | OD1 | 121.4° | 120.0° |
| CB | CG | ND2 | 116.8° | 120.0° |
| CG | CB | HB1C | 109.0° | 109.4° |
| CG | CB | HB2C | 108.7° | 109.5° |
| OD1 | CG | ND2 | 121.8° | 120.1° |
| CG | ND2 | OAJ | 119.9° | 120.0° |
| CG | ND2 | HD2 | 120.1° | 120.0° |
| OAJ | ND2 | HD2 | 120.1° | 120.0° |
| ND2 | OAJ | HAJ | 109.5° | 114.0° |
| O5' | C5' | C4' | 110.7° | 109.4° |
| O5' | C5' | H5'1 | 109.1° | 109.5° |
| O5' | C5' | H5'2 | 108.8° | 109.5° |
| C5' | C4' | C3' | 113.1° | 110.3° |
| C5' | C4' | O4' | 111.9° | 110.4° |
| C4' | C5' | H5'1 | 109.1° | 109.5° |
| C4' | C5' | H5'2 | 108.8° | 109.5° |
| C5' | C4' | H4' | 103.9° | 110.4° |
| C3' | C4' | O4' | 105.0° | 104.8° |
| C4' | C3' | O3' | 110.6° | 110.5° |
| C4' | C3' | C2' | 101.2° | 104.0° |
| C3' | C4' | H4' | 111.0° | 110.3° |
| C4' | C3' | H3' | 114.5° | 110.5° |
| C4' | O4' | C1' | 110.4° | 105.3° |
| O4' | C4' | H4' | 112.1° | 110.5° |
| O3' | C3' | C2' | 110.6° | 110.5° |
| O3' | C3' | H3' | 105.7° | 110.5° |
| C3' | O3' | HB | 109.5° | 114.0° |
| C3' | C2' | O2' | 108.0° | 110.5° |
| C3' | C2' | C1' | 105.0° | 104.1° |
| C2' | C3' | H3' | 114.4° | 110.6° |
| C3' | C2' | H2' | 112.8° | 110.5° |
| O2' | C2' | C1' | 108.1° | 110.5° |
| O2' | C2' | H2' | 109.9° | 110.5° |
| C2' | O2' | HC | 109.5° | 114.0° |
| C2' | C1' | O4' | 105.6° | 104.8° |
| C2' | C1' | N9 | 110.3° | 110.4° |
| C1' | C2' | H2' | 112.7° | 110.6° |
| C2' | C1' | H1' | 111.7° | 110.4° |
| O4' | C1' | N9 | 110.1° | 110.4° |
| O4' | C1' | H1' | 111.8° | 110.4° |
| C1' | N9 | C4 | 124.2° | 126.3° |
| C1' | N9 | C8 | 126.8° | 126.3° |
| N9 | C1' | H1' | 107.3° | 110.4° |
| C4 | N9 | C8 | 109.1° | 107.4° |
| N9 | C4 | N3 | 133.2° | 134.9° |
| N9 | C4 | C5 | 107.1° | 106.0° |
| N9 | C8 | H8 | 125.6° | 125.0° |
| N9 | C8 | N7 | 108.8° | 110.0° |
| N3 | C4 | C5 | 119.7° | 119.1° |
| C4 | N3 | C2 | 120.6° | 120.7° |
| C4 | C5 | C6 | 117.5° | 118.1° |
| C4 | C5 | N7 | 108.4° | 107.1° |
| N3 | C2 | N1 | 121.9° | 122.4° |
| N3 | C2 | H2 | 119.0° | 118.8° |
| C2 | N1 | C6 | 121.5° | 121.2° |
| N1 | C2 | H2 | 119.0° | 118.8° |
| N1 | C6 | N6 | 120.5° | 120.8° |
| N1 | C6 | C5 | 118.8° | 118.5° |
| N6 | C6 | C5 | 120.7° | 120.7° |
| C6 | N6 | H61N | 109.5° | 120.0° |
| C6 | N6 | H62N | 109.5° | 120.0° |
| C6 | C5 | N7 | 134.1° | 134.7° |
| C5 | N7 | C8 | 106.7° | 109.5° |
| HN1 | N | HN2 | 109.5° | 111.0° |
| HB1C | CB | HB2C | 110.6° | 109.5° |
| H5'1 | C5' | H5'2 | 110.4° | 109.5° |
| H8 | C8 | N7 | 125.6° | 125.0° |
| H61N | N6 | H62N | 109.4° | 120.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2P | P | O1P | O3P | 125.0° | 120.0° |
| O2P | P | O1P | O5' | 127.8° | 120.0° |
| O2P | P | O3P | O5' | 112.9° | 119.9° |
| O2P | P | O3P | C | 54.3° | 65.1° |
| O2P | P | O5' | C5' | 179.7° | 65.1° |
| O1P | P | O3P | O5' | 120.4° | 120.0° |
| O1P | P | O3P | C | 179.0° | 54.9° |
| O1P | P | O5' | C5' | 48.3° | 54.9° |
| O1P | P | O2P | H2P | 95.7° | 179.9° |
| P | O3P | C | O | 7.3° | 0.1° |
| P | O3P | C | CA | 172.9° | 180.0° |
| O3P | P | O5' | C5' | 61.9° | 175.0° |
| O3P | P | O2P | H2P | 144.3° | 59.9° |
| O5' | P | O3P | C | 58.6° | 175.0° |
| P | O5' | C5' | C4' | 121.1° | 180.0° |
| O5' | P | O2P | H2P | 36.8° | 60.0° |
| P | O5' | C5' | H5'1 | 1.1° | 60.1° |
| P | O5' | C5' | H5'2 | 119.4° | 59.9° |
| O3P | C | O | CA | 179.8° | 179.9° |
| O3P | C | CA | N | 158.0° | 160.0° |
| O3P | C | CA | CB | 79.9° | 79.9° |
| O3P | C | CA | HA | 39.9° | 40.1° |
| O | C | CA | N | 21.8° | 20.0° |
| O | C | CA | CB | 100.3° | 100.0° |
| O | C | CA | HA | 139.9° | 140.0° |
| C | CA | N | CB | 122.4° | 120.1° |
| C | CA | N | HA | 117.8° | 119.9° |
| C | CA | CB | HA | 117.9° | 120.0° |
| C | CA | CB | CG | 166.5° | 175.0° |
| C | CA | N | HN1 | 46.3° | 60.0° |
| C | CA | N | HN2 | 166.3° | 176.0° |
| C | CA | CB | HB1C | 46.5° | 65.0° |
| C | CA | CB | HB2C | 74.1° | 55.0° |
| N | CA | CB | HA | 118.3° | 120.0° |
| N | CA | CB | CG | 42.7° | 64.9° |
| CA | N | HN1 | HN2 | 120.0° | 124.0° |
| N | CA | CB | HB1C | 77.3° | 55.0° |
| N | CA | CB | HB2C | 162.1° | 175.0° |
| CA | CB | CG | HB1C | 120.0° | 120.0° |
| CA | CB | CG | HB2C | 119.4° | 120.1° |
| CA | CB | CG | OD1 | 73.3° | 0.0° |
| CA | CB | CG | ND2 | 107.9° | 180.0° |
| CB | CA | N | HN1 | 76.2° | 60.1° |
| CB | CA | N | HN2 | 43.8° | 63.9° |
| CA | CB | HB1C | HB2C | 119.4° | 120.0° |
| CB | CG | OD1 | ND2 | 178.8° | 180.0° |
| CB | CG | ND2 | OAJ | 179.9° | 180.0° |
| CG | CB | CA | HA | 75.6° | 55.0° |
| CG | CB | HB1C | HB2C | 119.4° | 120.0° |
| CB | CG | ND2 | HD2 | 0.1° | 0.0° |
| OD1 | CG | ND2 | OAJ | 1.0° | 0.0° |
| OD1 | CG | CB | HB1C | 166.7° | 120.0° |
| OD1 | CG | CB | HB2C | 46.1° | 120.0° |
| OD1 | CG | ND2 | HD2 | 179.0° | 180.0° |
| CG | ND2 | OAJ | HD2 | 180.0° | 180.0° |
| ND2 | CG | CB | HB1C | 12.1° | 60.0° |
| ND2 | CG | CB | HB2C | 132.7° | 60.0° |
| CG | ND2 | OAJ | HAJ | 53.7° | 179.9° |
| O5' | C5' | C4' | H5'1 | 120.0° | 119.9° |
| O5' | C5' | C4' | H5'2 | 119.5° | 120.0° |
| O5' | C5' | C4' | C3' | 68.5° | 175.0° |
| O5' | C5' | C4' | O4' | 49.8° | 69.6° |
| O5' | C5' | H5'1 | H5'2 | 119.5° | 120.1° |
| O5' | C5' | C4' | H4' | 171.1° | 52.8° |
| C5' | C4' | C3' | O4' | 122.3° | 118.8° |
| C5' | C4' | C3' | H4' | 116.3° | 122.2° |
| C5' | C4' | O4' | H4' | 116.4° | 122.4° |
| C5' | C4' | C3' | O3' | 85.7° | 98.5° |
| C5' | C4' | C3' | C2' | 157.1° | 142.8° |
| C5' | C4' | O4' | C1' | 147.0° | 159.3° |
| C4' | C5' | H5'1 | H5'2 | 119.5° | 120.0° |
| C5' | C4' | C3' | H3' | 33.5° | 24.1° |
| C3' | C4' | O4' | H4' | 120.6° | 118.8° |
| C4' | C3' | O3' | C2' | 111.2° | 114.6° |
| C4' | C3' | O3' | H3' | 124.4° | 122.6° |
| C4' | C3' | C2' | H3' | 123.6° | 118.7° |
| C4' | C3' | C2' | O2' | 82.4° | 118.7° |
| C4' | C3' | C2' | C1' | 32.9° | 0.0° |
| C3' | C4' | O4' | C1' | 24.0° | 40.5° |
| C3' | C4' | C5' | H5'1 | 51.5° | 65.0° |
| C3' | C4' | C5' | H5'2 | 172.0° | 55.0° |
| C4' | C3' | O3' | HB | 57.7° | 180.0° |
| C4' | C3' | C2' | H2' | 156.0° | 118.8° |
| O4' | C4' | C3' | O3' | 152.0° | 142.6° |
| O4' | C4' | C3' | C2' | 34.8° | 24.0° |
| C4' | O4' | C1' | C2' | 2.8° | 40.5° |
| C4' | O4' | C1' | N9 | 121.8° | 159.4° |
| O4' | C4' | C5' | H5'1 | 169.9° | 50.3° |
| O4' | C4' | C5' | H5'2 | 69.6° | 170.4° |
| O4' | C4' | C3' | H3' | 88.8° | 94.8° |
| C4' | O4' | C1' | H1' | 119.0° | 78.3° |
| O3' | C3' | C2' | H3' | 119.2° | 122.7° |
| O3' | C3' | C2' | O2' | 34.8° | 0.0° |
| O3' | C3' | C2' | C1' | 150.0° | 118.6° |
| O3' | C3' | C4' | H4' | 30.6° | 23.7° |
| O3' | C3' | C2' | H2' | 86.9° | 122.6° |
| C3' | C2' | O2' | C1' | 113.1° | 114.6° |
| C3' | C2' | O2' | H2' | 123.5° | 122.6° |
| C3' | C2' | C1' | H2' | 123.2° | 118.7° |
| C3' | C2' | C1' | O4' | 19.8° | 24.0° |
| C3' | C2' | C1' | N9 | 99.2° | 142.8° |
| C2' | C3' | C4' | H4' | 86.6° | 95.0° |
| C2' | C3' | O3' | HB | 168.9° | 65.4° |
| C3' | C2' | O2' | HC | 4.9° | 61.4° |
| C3' | C2' | C1' | H1' | 141.6° | 94.9° |
| O2' | C2' | C1' | H2' | 121.7° | 122.7° |
| O2' | C2' | C1' | O4' | 95.4° | 142.6° |
| O2' | C2' | C1' | N9 | 145.7° | 98.6° |
| O2' | C2' | C3' | H3' | 154.0° | 122.7° |
| O2' | C2' | C1' | H1' | 26.5° | 23.7° |
| C2' | C1' | O4' | N9 | 119.0° | 118.8° |
| C2' | C1' | O4' | H1' | 121.8° | 118.9° |
| C2' | C1' | N9 | H1' | 121.9° | 122.3° |
| C2' | C1' | N9 | C4 | 110.1° | 85.0° |
| C2' | C1' | N9 | C8 | 68.3° | 95.3° |
| C1' | C2' | C3' | H3' | 90.7° | 118.7° |
| C1' | C2' | O2' | HC | 108.2° | 176.1° |
| O4' | C1' | N9 | H1' | 121.9° | 122.3° |
| O4' | C1' | N9 | C4 | 133.8° | 159.7° |
| O4' | C1' | N9 | C8 | 47.9° | 20.1° |
| C1' | O4' | C4' | H4' | 96.6° | 78.3° |
| O4' | C1' | C2' | H2' | 142.9° | 94.7° |
| C1' | N9 | C4 | C8 | 178.6° | 179.8° |
| C1' | N9 | C4 | N3 | 0.4° | 0.0° |
| C1' | N9 | C4 | C5 | 179.6° | 180.0° |
| N9 | C1' | C2' | H2' | 24.0° | 24.1° |
| C1' | N9 | C8 | H8 | 0.3° | 0.1° |
| C1' | N9 | C8 | N7 | 179.7° | 179.8° |
| N9 | C4 | N3 | C5 | 180.0° | 179.9° |
| N9 | C4 | N3 | C2 | 180.0° | 179.9° |
| N9 | C4 | C5 | C6 | 178.8° | 180.0° |
| N9 | C4 | C5 | N7 | 0.4° | 0.0° |
| C4 | N9 | C1' | H1' | 11.8° | 37.3° |
| C4 | N9 | C8 | H8 | 178.9° | 179.8° |
| C4 | N9 | C8 | N7 | 1.1° | 0.4° |
| C8 | N9 | C4 | N3 | 179.1° | 179.7° |
| C8 | N9 | C4 | C5 | 0.9° | 0.2° |
| N9 | C8 | N7 | C5 | 0.9° | 0.4° |
| C8 | N9 | C1' | H1' | 169.8° | 142.4° |
| N9 | C8 | H8 | N7 | 180.0° | 179.7° |
| C4 | N3 | C2 | N1 | 0.5° | 0.1° |
| N3 | C4 | C5 | C6 | 1.2° | 0.0° |
| N3 | C4 | C5 | N7 | 179.6° | 180.0° |
| C4 | N3 | C2 | H2 | 179.5° | 180.0° |
| C5 | C4 | N3 | C2 | 0.0° | 0.0° |
| C4 | C5 | C6 | N1 | 2.0° | 0.0° |
| C4 | C5 | C6 | N6 | 179.8° | 180.0° |
| C4 | C5 | C6 | N7 | 178.9° | 180.0° |
| C4 | C5 | N7 | C8 | 0.3° | 0.3° |
| N3 | C2 | N1 | H2 | 180.0° | 179.9° |
| N3 | C2 | N1 | C6 | 0.3° | 0.1° |
| C2 | N1 | C6 | N6 | 179.4° | 180.0° |
| C2 | N1 | C6 | C5 | 1.6° | 0.0° |
| N1 | C6 | N6 | C5 | 177.8° | 180.0° |
| N1 | C6 | C5 | N7 | 179.1° | 180.0° |
| C6 | N1 | C2 | H2 | 179.6° | 179.9° |
| N1 | C6 | N6 | H61N | 6.4° | 0.0° |
| N1 | C6 | N6 | H62N | 113.5° | 180.0° |
| N6 | C6 | C5 | N7 | 1.2° | 0.0° |
| C6 | N6 | H61N | H62N | 120.0° | 179.9° |
| C5 | C6 | N6 | H61N | 171.4° | 180.0° |
| C5 | C6 | N6 | H62N | 68.7° | 0.0° |
| C6 | C5 | N7 | C8 | 179.3° | 179.7° |
| C5 | N7 | C8 | H8 | 179.1° | 179.8° |
| HA | CA | N | HN1 | 164.1° | 179.9° |
| HA | CA | N | HN2 | 75.9° | 56.1° |
| HA | CA | CB | HB1C | 164.4° | 175.0° |
| HA | CA | CB | HB2C | 43.9° | 65.0° |
| HD2 | ND2 | OAJ | HAJ | 126.3° | 0.1° |
| H5'1 | C5' | C4' | H4' | 68.9° | 172.8° |
| H5'2 | C5' | C4' | H4' | 51.6° | 67.2° |
| H4' | C4' | C3' | H3' | 149.8° | 146.3° |
| H3' | C3' | O3' | HB | 66.7° | 57.4° |
| H3' | C3' | C2' | H2' | 32.4° | 0.1° |
| H2' | C2' | O2' | HC | 128.4° | 61.1° |
| H2' | C2' | C1' | H1' | 95.3° | 146.4° |
