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SummaryGeometryRelated PDB entries

N9M

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAFCAAdoub1.38Å1.40ÅAromatic
CAFCAEsing1.38Å1.39ÅAromatic
CAACABsing1.38Å1.39ÅAromatic
CAGCAEsing1.51Å1.39Å
CAGOAHsing1.45Å1.44Å
OALNAKsing1.22Å1.47Å
OALCAMsing1.34Å1.35Å
CAECADdoub1.38Å1.40ÅAromatic
NAKCAIsing1.35Å1.34Å
CAIOAJdoub1.21Å1.23Å
CAIOAHsing1.35Å1.36Å
OANCAMdoub1.21Å1.23Å
CABCACdoub1.38Å1.39ÅAromatic
CADCACsing1.38Å1.39ÅAromatic
CAAH1sing1.08Å1.08Å
CABH2sing1.08Å1.08Å
CACH3sing1.08Å1.08Å
CADH4sing1.08Å1.08Å
CAFH5sing1.08Å1.08Å
CAGH6sing1.09Å1.10Å
CAGH7sing1.09Å1.10Å
NAKH9sing0.97Å1.00Å
CAMOXTsing1.35Å1.34Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAACAFCAE119.2°120.0°
CAFCAACAB120.4°120.0°
CAFCAAH1119.8°120.0°
CAACAFH5120.3°120.0°
CAFCAECAG120.4°120.0°
CAFCAECAD120.2°120.0°
CAECAFH5120.4°120.0°
CAACABCAC120.4°120.0°
CABCAAH1119.8°120.0°
CAACABH2119.8°120.0°
CAECAGOAH108.0°109.4°
CAGCAECAD119.4°120.0°
CAECAGH6109.8°109.5°
CAECAGH7109.8°109.5°
CAGOAHCAI112.6°117.0°
OAHCAGH6109.8°109.4°
OAHCAGH7109.8°109.5°
NAKOALCAM105.2°116.9°
OALNAKCAI118.8°120.0°
OALNAKH9120.6°120.0°
OALCAMOAN120.8°120.0°
OALCAMOXT116.8°120.0°
CAECADCAC120.6°120.0°
CAECADH4119.7°120.0°
NAKCAIOAJ120.6°120.0°
NAKCAIOAH119.1°119.9°
CAINAKH9120.6°120.0°
OAJCAIOAH120.3°120.1°
OANCAMOXT122.4°120.0°
CABCACCAD119.1°120.0°
CACCABH2119.8°120.0°
CABCACH3120.4°120.0°
CADCACH3120.4°120.0°
CACCADH4119.7°120.0°
H6CAGH7109.5°109.5°
CAMOXTHXT109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAACAFCAEH5180.0°179.5°
CAFCAACABH1180.0°179.7°
CAACAFCAECAG180.0°179.6°
CAACAFCAECAD0.1°0.5°
CAFCAACABCAC0.6°0.3°
CAFCAACABH2179.4°179.7°
CAECAFCAACAB0.2°0.6°
CAFCAECAGCAD179.9°179.8°
CAFCAECAGOAH155.9°89.8°
CAFCAECADCAC0.0°0.2°
CAECAFCAAH1179.8°179.7°
CAFCAECADH4180.0°179.7°
CAFCAECAGH684.3°30.2°
CAFCAECAGH736.1°150.2°
CAACABCACH2180.0°180.0°
CAACABCACCAD0.7°0.0°
CAACABCACH3179.3°180.0°
CABCAACAFH5179.8°180.0°
CAECAGOAHH6119.8°120.0°
CAECAGOAHH7119.8°120.0°
CAECAGOAHCAI170.1°180.0°
CAGCAECADCAC179.9°180.0°
CAGCAECADH40.1°0.1°
CAGCAECAFH50.0°0.2°
CAECAGH6H7120.7°120.1°
OAHCAGCAECAD24.0°90.0°
CAGOAHCAINAK133.7°180.0°
CAGOAHCAIOAJ47.7°0.0°
OAHCAGH6H7120.7°120.0°
OALNAKCAIH9180.0°180.0°
OALNAKCAIOAJ1.8°0.0°
OALNAKCAIOAH179.6°180.0°
NAKOALCAMOAN179.5°0.0°
NAKOALCAMOXT0.1°179.9°
CAMOALNAKCAI155.3°180.0°
OALCAMOANOXT179.6°180.0°
CAMOALNAKH924.7°0.0°
OALCAMOXTHXT179.6°180.0°
CAECADCACCAB0.4°0.1°
CAECADCACH4180.0°180.0°
CAECADCACH3179.6°180.0°
CADCAECAFH5179.9°180.0°
CADCAECAGH695.8°150.0°
CADCAECAGH7143.8°30.0°
NAKCAIOAJOAH178.6°180.0°
OAJCAINAKH9178.2°180.0°
CAIOAHCAGH650.3°60.0°
CAIOAHCAGH770.2°60.0°
OAHCAINAKH90.4°0.0°
OANCAMOXTHXT0.0°0.1°
CABCACCADH3180.0°179.9°
CACCABCAAH1179.4°180.0°
CABCACCADH4179.7°180.0°
CADCACCABH2179.3°180.0°
H1CAACABH20.6°0.0°
H1CAACAFH50.2°0.3°
H2CABCACH30.7°0.0°
H3CACCADH40.4°0.0°

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PDB entries from 2024-07-17

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