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N8Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N3C2doub1.31Å1.31ÅAromatic
N3C3sing1.34Å1.37ÅAromatic
C2N2sing1.32Å1.33ÅAromatic
C9C3doub1.40Å1.41ÅAromatic
C9C8sing1.36Å1.36ÅAromatic
C3C4sing1.42Å1.42ÅAromatic
C8C6doub1.40Å1.39ÅAromatic
N2C1doub1.33Å1.36ÅAromatic
C4C1sing1.42Å1.45ÅAromatic
C4C5doub1.40Å1.41ÅAromatic
C1N1sing1.38Å1.34Å
C6C5sing1.38Å1.37ÅAromatic
C6O1sing1.36Å1.37Å
O1C7sing1.43Å1.42Å
N1H1sing0.97Å1.00Å
N1H2sing0.97Å1.00Å
C2H3sing1.08Å1.08Å
C5H4sing1.08Å1.08Å
C7H5sing1.09Å1.10Å
C7H6sing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C8H8sing1.08Å1.08Å
C9H9sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N3C3115.6°120.5°
N3C2N2128.7°123.0°
N3C2H3115.7°118.5°
N3C3C9118.3°121.9°
N3C3C4122.9°118.7°
C2N2C1117.0°121.4°
N2C2H3115.6°118.5°
C3C9C8120.9°119.8°
C9C3C4118.8°119.5°
C3C9H9119.5°120.1°
C9C8C6120.3°121.0°
C9C8H8119.8°119.5°
C8C9H9119.6°120.2°
C3C4C1115.0°118.2°
C3C4C5118.7°119.8°
C8C6C5121.0°120.6°
C8C6O1113.5°119.7°
C6C8H8119.8°119.5°
N2C1C4120.8°118.2°
N2C1N1118.4°120.9°
C1C4C5126.3°122.1°
C4C1N1120.8°120.9°
C4C5C6120.3°119.3°
C4C5H4119.8°120.3°
C1N1H1109.5°120.0°
C1N1H2109.5°120.0°
C5C6O1125.6°119.7°
C6C5H4119.9°120.3°
C6O1C7118.3°117.0°
O1C7H5109.5°109.4°
O1C7H6109.5°109.5°
O1C7H7109.4°109.5°
H1N1H2109.5°120.0°
H5C7H6109.5°109.5°
H5C7H7109.5°109.4°
H6C7H7109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N3C2N2H3180.0°179.9°
C2N3C3C9179.1°180.0°
C2N3C3C40.4°0.2°
N3C2N2C10.2°0.1°
C3N3C2N20.2°0.1°
N3C3C9C4179.5°179.7°
N3C3C9C8179.3°179.8°
N3C3C4C10.2°0.5°
N3C3C4C5179.5°180.0°
C3N3C2H3179.8°180.0°
N3C3C9H90.7°0.0°
C2N2C1C40.4°0.2°
C2N2C1N1179.0°179.9°
C3C9C8H9180.0°179.8°
C3C9C8C60.1°0.5°
C9C3C4C1179.2°179.7°
C9C3C4C50.1°0.2°
C3C9C8H8180.0°179.7°
C8C9C3C40.1°0.5°
C9C8C6H8180.0°179.8°
C9C8C6C50.3°0.2°
C9C8C6O1179.4°179.7°
C3C4C1N20.2°0.5°
C3C4C1C5179.3°179.5°
C3C4C1N1179.2°179.7°
C3C4C5C60.4°0.1°
C3C4C5H4179.6°180.0°
C4C3C9H9179.8°179.7°
C8C6C5C40.5°0.0°
C8C6C5O1179.7°179.9°
C8C6O1C7180.0°0.0°
C8C6C5H4179.5°180.0°
C6C8C9H9179.9°179.7°
N2C1C4N1179.4°179.7°
N2C1C4C5179.0°180.0°
N2C1N1H10.0°0.0°
N2C1N1H2120.0°179.7°
C1N2C2H3179.8°180.0°
C1C4C5C6178.8°179.4°
C4C1N1H1179.4°179.7°
C4C1N1H260.6°0.6°
C1C4C5H41.2°0.5°
C5C4C1N11.6°0.2°
C4C5C6H4180.0°180.0°
C4C5C6O1179.2°180.0°
C1N1H1H2120.0°179.7°
C5C6O1C70.3°180.0°
C5C6C8H8179.7°180.0°
O1C6C5H40.8°0.0°
C6O1C7H5180.0°180.0°
C6O1C7H660.0°60.0°
C6O1C7H760.0°60.1°
O1C6C8H80.6°0.1°
O1C7H5H6120.0°120.0°
O1C7H5H7120.0°120.0°
O1C7H6H7120.0°120.0°
H5C7H6H7120.0°120.0°
H8C8C9H90.1°0.1°

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PDB entries from 2024-08-07

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