N85
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | C2 | sing | 1.35Å | 1.34Å | |
N1 | C1' | sing | 1.46Å | 1.50Å | |
C2 | O2 | doub | 1.22Å | 1.23Å | |
C2 | N3 | sing | 1.35Å | 1.34Å | |
N3 | C4 | sing | 1.35Å | 1.34Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C4 | C5 | sing | 1.47Å | 1.53Å | |
C5 | C7 | doub | 1.36Å | 1.51Å | Aromatic |
C5 | N30 | sing | 1.38Å | 1.33Å | Aromatic |
C7 | C8 | sing | 1.42Å | 1.52Å | Aromatic |
C8 | C9 | doub | 1.40Å | 1.40Å | Aromatic |
C8 | C16 | sing | 1.41Å | 1.40Å | Aromatic |
C9 | C10 | sing | 1.36Å | 1.40Å | Aromatic |
C1' | C2' | sing | 1.53Å | 1.55Å | |
C1' | O5' | sing | 1.43Å | 1.45Å | |
C10 | C11 | doub | 1.39Å | 1.39Å | Aromatic |
C11 | C12 | sing | 1.38Å | 1.39Å | Aromatic |
C12 | C16 | doub | 1.39Å | 1.40Å | Aromatic |
C16 | N30 | sing | 1.37Å | 1.34Å | Aromatic |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | C3' | sing | 1.53Å | 1.54Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C4' | sing | 1.53Å | 1.53Å | |
C4' | O4' | sing | 1.43Å | 1.43Å | |
C4' | C5' | sing | 1.53Å | 1.55Å | |
C5' | O5' | sing | 1.43Å | 1.46Å | |
C5' | C6' | sing | 1.53Å | 1.54Å | |
C6' | O6' | sing | 1.43Å | 1.43Å | |
N1 | HN1 | sing | 0.97Å | 1.00Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
C7 | H7 | sing | 1.08Å | 1.08Å | |
C9 | H9 | sing | 1.08Å | 1.08Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C10 | H10 | sing | 1.08Å | 1.08Å | |
C11 | H11 | sing | 1.08Å | 1.08Å | |
C12 | H12 | sing | 1.08Å | 1.08Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
N30 | HN30 | sing | 0.97Å | 1.00Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | HO4' | sing | 0.97Å | 0.95Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C6' | H6' | sing | 1.09Å | 1.10Å | |
C6' | H6'A | sing | 1.09Å | 1.10Å | |
O6' | HO6' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | N1 | C1' | 123.4° | 120.0° |
N1 | C2 | O2 | 121.4° | 120.0° |
N1 | C2 | N3 | 118.2° | 120.0° |
C2 | N1 | HN1 | 118.3° | 120.0° |
N1 | C1' | C2' | 109.7° | 109.5° |
N1 | C1' | O5' | 111.9° | 109.5° |
C1' | N1 | HN1 | 118.3° | 120.0° |
N1 | C1' | H1' | 108.2° | 109.5° |
O2 | C2 | N3 | 120.4° | 120.0° |
C2 | N3 | C4 | 123.2° | 120.0° |
C2 | N3 | HN3 | 118.4° | 120.0° |
N3 | C4 | O4 | 124.6° | 120.0° |
N3 | C4 | C5 | 116.4° | 120.0° |
C4 | N3 | HN3 | 118.4° | 120.0° |
O4 | C4 | C5 | 119.1° | 120.0° |
C4 | C5 | C7 | 126.9° | 125.5° |
C4 | C5 | N30 | 122.7° | 125.4° |
C7 | C5 | N30 | 110.4° | 109.1° |
C5 | C7 | C8 | 99.8° | 107.7° |
C5 | C7 | H7 | 130.1° | 126.1° |
C5 | N30 | C16 | 111.7° | 108.8° |
C5 | N30 | HN30 | 124.2° | 125.6° |
C7 | C8 | C9 | 132.4° | 133.4° |
C7 | C8 | C16 | 107.5° | 107.0° |
C8 | C7 | H7 | 130.1° | 126.2° |
C9 | C8 | C16 | 120.0° | 119.7° |
C8 | C9 | C10 | 120.2° | 119.8° |
C8 | C9 | H9 | 119.9° | 120.1° |
C8 | C16 | C12 | 119.4° | 119.4° |
C8 | C16 | N30 | 110.6° | 107.4° |
C9 | C10 | C11 | 119.9° | 120.6° |
C10 | C9 | H9 | 119.9° | 120.1° |
C9 | C10 | H10 | 120.0° | 119.7° |
C2' | C1' | O5' | 110.4° | 109.4° |
C1' | C2' | O2' | 110.2° | 109.5° |
C1' | C2' | C3' | 111.6° | 109.2° |
C2' | C1' | H1' | 107.6° | 109.5° |
C1' | C2' | H2' | 108.4° | 109.5° |
C1' | O5' | C5' | 109.6° | 114.1° |
O5' | C1' | H1' | 108.8° | 109.5° |
C10 | C11 | C12 | 119.9° | 120.6° |
C11 | C10 | H10 | 120.0° | 119.7° |
C10 | C11 | H11 | 120.1° | 119.7° |
C11 | C12 | C16 | 120.6° | 119.8° |
C12 | C11 | H11 | 120.0° | 119.7° |
C11 | C12 | H12 | 119.7° | 120.1° |
C12 | C16 | N30 | 130.1° | 133.2° |
C16 | C12 | H12 | 119.7° | 120.1° |
C16 | N30 | HN30 | 124.1° | 125.6° |
O2' | C2' | C3' | 108.1° | 109.5° |
O2' | C2' | H2' | 110.0° | 109.5° |
C2' | O2' | HO2' | 109.5° | 114.0° |
C2' | C3' | O3' | 109.6° | 109.6° |
C2' | C3' | C4' | 111.9° | 109.0° |
C3' | C2' | H2' | 108.5° | 109.6° |
C2' | C3' | H3' | 107.9° | 109.5° |
O3' | C3' | C4' | 110.1° | 109.6° |
O3' | C3' | H3' | 109.4° | 109.6° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C3' | C4' | O4' | 108.7° | 109.5° |
C3' | C4' | C5' | 109.9° | 109.2° |
C4' | C3' | H3' | 108.0° | 109.6° |
C3' | C4' | H4' | 108.8° | 109.5° |
O4' | C4' | C5' | 110.7° | 109.5° |
O4' | C4' | H4' | 110.1° | 109.5° |
C4' | O4' | HO4' | 109.5° | 114.0° |
C4' | C5' | O5' | 108.5° | 109.4° |
C4' | C5' | C6' | 115.5° | 109.5° |
C5' | C4' | H4' | 108.6° | 109.6° |
C4' | C5' | H5' | 107.1° | 109.5° |
O5' | C5' | C6' | 110.2° | 109.5° |
O5' | C5' | H5' | 108.1° | 109.5° |
C5' | C6' | O6' | 110.5° | 109.5° |
C6' | C5' | H5' | 107.1° | 109.5° |
C5' | C6' | H6' | 109.2° | 109.4° |
C5' | C6' | H6'A | 109.2° | 109.5° |
O6' | C6' | H6' | 109.2° | 109.5° |
O6' | C6' | H6'A | 109.2° | 109.5° |
C6' | O6' | HO6' | 109.5° | 114.0° |
H6' | C6' | H6'A | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | N1 | C1' | HN1 | 180.0° | 179.7° |
N1 | C2 | O2 | N3 | 179.7° | 179.9° |
N1 | C2 | N3 | C4 | 1.2° | 180.0° |
C2 | N1 | C1' | C2' | 166.3° | 145.0° |
C2 | N1 | C1' | O5' | 70.8° | 95.1° |
N1 | C2 | N3 | HN3 | 178.8° | 0.0° |
C2 | N1 | C1' | H1' | 49.1° | 24.9° |
C1' | N1 | C2 | O2 | 1.4° | 0.1° |
C1' | N1 | C2 | N3 | 178.9° | 180.0° |
N1 | C1' | C2' | O5' | 123.8° | 120.0° |
N1 | C1' | C2' | H1' | 117.5° | 120.0° |
N1 | C1' | O5' | H1' | 119.5° | 120.0° |
N1 | C1' | C2' | O2' | 62.7° | 62.5° |
N1 | C1' | C2' | C3' | 177.1° | 177.6° |
N1 | C1' | O5' | C5' | 173.1° | 178.9° |
N1 | C1' | C2' | H2' | 57.7° | 57.6° |
O2 | C2 | N3 | C4 | 179.1° | 0.0° |
O2 | C2 | N1 | HN1 | 178.6° | 179.8° |
O2 | C2 | N3 | HN3 | 0.9° | 180.0° |
C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
C2 | N3 | C4 | O4 | 0.7° | 0.0° |
C2 | N3 | C4 | C5 | 179.2° | 180.0° |
N3 | C2 | N1 | HN1 | 1.1° | 0.3° |
N3 | C4 | O4 | C5 | 179.9° | 180.0° |
N3 | C4 | C5 | C7 | 2.0° | 180.0° |
N3 | C4 | C5 | N30 | 179.4° | 0.3° |
O4 | C4 | C5 | C7 | 178.1° | 0.0° |
O4 | C4 | C5 | N30 | 0.5° | 179.7° |
O4 | C4 | N3 | HN3 | 179.3° | 180.0° |
C4 | C5 | C7 | N30 | 178.8° | 179.7° |
C4 | C5 | C7 | C8 | 179.1° | 180.0° |
C4 | C5 | N30 | C16 | 179.1° | 179.8° |
C5 | C4 | N3 | HN3 | 0.8° | 0.0° |
C4 | C5 | C7 | H7 | 0.9° | 0.0° |
C4 | C5 | N30 | HN30 | 0.9° | 0.1° |
C5 | C7 | C8 | H7 | 180.0° | 179.9° |
C5 | C7 | C8 | C9 | 178.8° | 179.9° |
C5 | C7 | C8 | C16 | 1.5° | 0.1° |
C7 | C5 | N30 | C16 | 2.1° | 0.4° |
C7 | C5 | N30 | HN30 | 177.9° | 179.6° |
N30 | C5 | C7 | C8 | 2.1° | 0.3° |
C5 | N30 | C16 | C8 | 1.0° | 0.4° |
C5 | N30 | C16 | C12 | 177.1° | 179.9° |
C5 | N30 | C16 | HN30 | 180.0° | 179.9° |
N30 | C5 | C7 | H7 | 177.9° | 179.8° |
C7 | C8 | C9 | C16 | 179.7° | 179.9° |
C7 | C8 | C9 | C10 | 179.0° | 179.9° |
C7 | C8 | C16 | C12 | 178.8° | 180.0° |
C7 | C8 | C16 | N30 | 0.4° | 0.2° |
C7 | C8 | C9 | H9 | 1.0° | 0.1° |
C8 | C9 | C10 | H9 | 180.0° | 180.0° |
C8 | C9 | C10 | C11 | 0.8° | 0.1° |
C9 | C8 | C16 | C12 | 1.4° | 0.1° |
C9 | C8 | C16 | N30 | 179.8° | 179.7° |
C9 | C8 | C7 | H7 | 1.2° | 0.1° |
C8 | C9 | C10 | H10 | 179.2° | 179.9° |
C16 | C8 | C9 | C10 | 1.3° | 0.0° |
C8 | C16 | C12 | C11 | 1.0° | 0.1° |
C8 | C16 | C12 | N30 | 178.1° | 179.7° |
C16 | C8 | C7 | H7 | 178.6° | 180.0° |
C16 | C8 | C9 | H9 | 178.7° | 180.0° |
C8 | C16 | C12 | H12 | 179.0° | 180.0° |
C8 | C16 | N30 | HN30 | 178.9° | 179.7° |
C9 | C10 | C11 | H10 | 180.0° | 179.9° |
C9 | C10 | C11 | C12 | 0.4° | 0.1° |
C9 | C10 | C11 | H11 | 179.5° | 179.9° |
C2' | C1' | O5' | H1' | 117.9° | 120.0° |
C1' | C2' | O2' | C3' | 122.3° | 119.7° |
C1' | C2' | O2' | H2' | 119.4° | 120.1° |
C1' | C2' | C3' | H2' | 119.4° | 119.9° |
C1' | C2' | C3' | O3' | 169.1° | 176.9° |
C1' | C2' | C3' | C4' | 46.8° | 57.0° |
C2' | C1' | O5' | C5' | 64.3° | 61.1° |
C2' | C1' | N1 | HN1 | 13.7° | 34.7° |
C1' | C2' | O2' | HO2' | 180.0° | 60.0° |
C1' | C2' | C3' | H3' | 71.9° | 62.9° |
O5' | C1' | C2' | O2' | 173.4° | 177.5° |
O5' | C1' | C2' | C3' | 53.3° | 57.6° |
C1' | O5' | C5' | C4' | 67.8° | 61.2° |
C1' | O5' | C5' | C6' | 164.8° | 178.9° |
O5' | C1' | N1 | HN1 | 109.2° | 85.3° |
O5' | C1' | C2' | H2' | 66.2° | 62.4° |
C1' | O5' | C5' | H5' | 48.0° | 58.8° |
C10 | C11 | C12 | H11 | 180.0° | 180.0° |
C10 | C11 | C12 | C16 | 0.5° | 0.0° |
C11 | C10 | C9 | H9 | 179.2° | 179.9° |
C10 | C11 | C12 | H12 | 179.5° | 179.9° |
C11 | C12 | C16 | H12 | 180.0° | 179.9° |
C11 | C12 | C16 | N30 | 179.0° | 179.7° |
C12 | C11 | C10 | H10 | 179.5° | 180.0° |
C16 | C12 | C11 | H11 | 179.5° | 180.0° |
C12 | C16 | N30 | HN30 | 2.9° | 0.1° |
N30 | C16 | C12 | H12 | 1.0° | 0.3° |
O2' | C2' | C3' | H2' | 119.2° | 120.2° |
O2' | C2' | C3' | O3' | 69.5° | 63.2° |
O2' | C2' | C3' | C4' | 168.2° | 176.9° |
O2' | C2' | C1' | H1' | 54.8° | 57.5° |
O2' | C2' | C3' | H3' | 49.5° | 57.0° |
C2' | C3' | O3' | C4' | 123.4° | 119.6° |
C2' | C3' | O3' | H3' | 118.1° | 120.2° |
C2' | C3' | C4' | H3' | 118.6° | 119.9° |
C2' | C3' | C4' | O4' | 171.4° | 176.9° |
C2' | C3' | C4' | C5' | 50.1° | 56.9° |
C3' | C2' | C1' | H1' | 65.4° | 62.4° |
C3' | C2' | O2' | HO2' | 57.7° | 179.7° |
C2' | C3' | O3' | HO3' | 180.0° | 60.0° |
C2' | C3' | C4' | H4' | 68.7° | 63.0° |
O3' | C3' | C4' | H3' | 119.3° | 120.2° |
O3' | C3' | C4' | O4' | 66.5° | 63.2° |
O3' | C3' | C4' | C5' | 172.2° | 176.9° |
O3' | C3' | C2' | H2' | 49.8° | 56.9° |
O3' | C3' | C4' | H4' | 53.4° | 56.9° |
C3' | C4' | O4' | C5' | 120.8° | 119.7° |
C3' | C4' | O4' | H4' | 119.1° | 120.1° |
C3' | C4' | C5' | H4' | 118.9° | 119.9° |
C3' | C4' | C5' | O5' | 60.0° | 57.6° |
C3' | C4' | C5' | C6' | 175.7° | 177.6° |
C4' | C3' | C2' | H2' | 72.6° | 63.0° |
C4' | C3' | O3' | HO3' | 56.6° | 179.6° |
C3' | C4' | O4' | HO4' | 180.0° | 60.0° |
C3' | C4' | C5' | H5' | 56.5° | 62.4° |
O4' | C4' | C5' | H4' | 121.1° | 120.2° |
O4' | C4' | C5' | O5' | 179.9° | 177.5° |
O4' | C4' | C5' | C6' | 55.7° | 62.6° |
O4' | C4' | C3' | H3' | 52.8° | 57.0° |
O4' | C4' | C5' | H5' | 63.6° | 57.5° |
C4' | C5' | O5' | C6' | 127.4° | 120.0° |
C4' | C5' | O5' | H5' | 115.8° | 120.0° |
C4' | C5' | C6' | H5' | 119.2° | 120.1° |
C4' | C5' | C6' | O6' | 61.7° | 175.0° |
C5' | C4' | C3' | H3' | 68.5° | 62.9° |
C5' | C4' | O4' | HO4' | 59.2° | 179.7° |
C4' | C5' | C6' | H6' | 178.1° | 55.0° |
C4' | C5' | C6' | H6'A | 58.5° | 65.0° |
O5' | C5' | C6' | H5' | 117.4° | 120.0° |
O5' | C5' | C6' | O6' | 61.7° | 65.1° |
C5' | O5' | C1' | H1' | 53.6° | 58.8° |
O5' | C5' | C4' | H4' | 58.9° | 62.3° |
O5' | C5' | C6' | H6' | 58.5° | 174.9° |
O5' | C5' | C6' | H6'A | 178.1° | 54.9° |
C5' | C6' | O6' | H6' | 120.2° | 120.0° |
C5' | C6' | O6' | H6'A | 120.2° | 120.0° |
C6' | C5' | C4' | H4' | 65.4° | 57.7° |
C5' | C6' | H6' | H6'A | 119.5° | 120.0° |
C5' | C6' | O6' | HO6' | 180.0° | 180.0° |
O6' | C6' | C5' | H5' | 179.1° | 54.9° |
O6' | C6' | H6' | H6'A | 119.5° | 120.0° |
HN1 | N1 | C1' | H1' | 130.8° | 154.7° |
H9 | C9 | C10 | H10 | 0.8° | 0.0° |
H1' | C1' | C2' | H2' | 175.2° | 177.6° |
H10 | C10 | C11 | H11 | 0.5° | 0.0° |
H11 | C11 | C12 | H12 | 0.5° | 0.1° |
H2' | C2' | O2' | HO2' | 60.6° | 60.1° |
H2' | C2' | C3' | H3' | 168.8° | 177.1° |
H3' | C3' | O3' | HO3' | 61.9° | 60.2° |
H3' | C3' | C4' | H4' | 172.7° | 177.1° |
H4' | C4' | O4' | HO4' | 61.0° | 60.1° |
H4' | C4' | C5' | H5' | 175.3° | 177.7° |
H5' | C5' | C6' | H6' | 58.9° | 65.1° |
H5' | C5' | C6' | H6'A | 60.8° | 174.9° |
H6' | C6' | O6' | HO6' | 59.9° | 60.0° |
H6'A | C6' | O6' | HO6' | 59.8° | 60.0° |