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Summary Geometry Related PDB entries

N7I

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C3	doub	1.38Å	1.40Å	Aromatic
C1	C7	sing	1.40Å	1.40Å	Aromatic
O1	C10	sing	1.43Å	1.44Å
C2	O3	sing	1.43Å	1.43Å
O2	C4	sing	1.36Å	1.37Å
C3	C4	sing	1.39Å	1.41Å	Aromatic
O3	C5	sing	1.36Å	1.37Å
C4	C5	doub	1.39Å	1.40Å	Aromatic
C5	C6	sing	1.38Å	1.38Å	Aromatic
C6	C7	doub	1.40Å	1.38Å	Aromatic
C7	C8	sing	1.48Å	1.47Å
C8	C9	doub	1.33Å	1.34Å
C9	C10	sing	1.51Å	1.51Å
C1	H1	sing	1.08Å	1.08Å
O1	HO1	sing	0.97Å	0.95Å
C2	H2	sing	1.09Å	1.10Å
C2	H2A	sing	1.09Å	1.10Å
C2	H2B	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C3	H3	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å
C10	H10	sing	1.09Å	1.10Å
C10	H10A	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C3	C1	C7	118.6°	120.0°
C1	C3	C4	120.1°	120.1°
C3	C1	H1	120.7°	120.0°
C1	C3	H3	120.0°	119.9°
C1	C7	C6	120.8°	119.9°
C1	C7	C8	125.5°	120.1°
C7	C1	H1	120.7°	120.0°
O1	C10	C9	112.6°	109.5°
C10	O1	HO1	109.5°	114.0°
O1	C10	H10	108.5°	109.5°
O1	C10	H10A	108.4°	109.5°
C2	O3	C5	119.8°	117.0°
O3	C2	H2	109.5°	109.5°
O3	C2	H2A	109.4°	109.5°
O3	C2	H2B	109.5°	109.4°
O2	C4	C3	120.3°	119.9°
O2	C4	C5	120.0°	119.9°
C4	O2	HO2	109.5°	114.0°
C3	C4	C5	119.7°	120.2°
C4	C3	H3	119.9°	120.0°
O3	C5	C4	124.1°	120.1°
O3	C5	C6	115.9°	120.0°
C4	C5	C6	119.9°	120.0°
C5	C6	C7	120.8°	119.9°
C5	C6	H6	119.6°	120.0°
C6	C7	C8	113.6°	120.0°
C7	C6	H6	119.6°	120.1°
C7	C8	C9	113.5°	120.0°
C7	C8	H8	123.3°	120.1°
C8	C9	C10	124.6°	120.0°
C9	C8	H8	123.2°	119.9°
C8	C9	H9	117.7°	120.0°
C10	C9	H9	117.8°	120.0°
C9	C10	H10	108.4°	109.4°
C9	C10	H10A	108.4°	109.5°
H2	C2	H2A	109.5°	109.5°
H2	C2	H2B	109.5°	109.5°
H2A	C2	H2B	109.5°	109.5°
H10	C10	H10A	110.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C3	C1	C7	H1	180.0°	179.6°
C1	C3	C4	O2	179.6°	180.0°
C1	C3	C4	H3	180.0°	179.9°
C1	C3	C4	C5	0.4°	0.1°
C3	C1	C7	C6	0.9°	0.1°
C3	C1	C7	C8	179.8°	179.9°
C7	C1	C3	C4	0.8°	0.1°
C1	C7	C6	C5	0.5°	0.0°
C1	C7	C6	C8	179.1°	180.0°
C1	C7	C8	C9	171.7°	0.0°
C7	C1	C3	H3	179.2°	180.0°
C1	C7	C6	H6	179.5°	180.0°
C1	C7	C8	H8	8.3°	179.9°
O1	C10	C9	C8	14.6°	134.9°
O1	C10	C9	H10	120.0°	120.0°
O1	C10	C9	H10A	120.0°	120.0°
O1	C10	C9	H9	165.4°	45.0°
O1	C10	H10	H10A	118.7°	120.0°
C2	O3	C5	C4	145.5°	180.0°
C2	O3	C5	C6	33.7°	0.1°
O3	C2	H2	H2A	120.0°	120.0°
O3	C2	H2	H2B	120.0°	120.0°
O3	C2	H2A	H2B	120.0°	120.0°
O2	C4	C3	C5	180.0°	179.9°
O2	C4	C5	O3	0.8°	0.1°
O2	C4	C5	C6	180.0°	180.0°
O2	C4	C3	H3	0.4°	0.1°
C3	C4	C5	O3	179.2°	180.0°
C3	C4	C5	C6	0.0°	0.0°
C4	C3	C1	H1	179.2°	179.7°
C3	C4	O2	HO2	180.0°	89.9°
O3	C5	C4	C6	179.2°	179.9°
O3	C5	C6	C7	179.2°	179.9°
C5	O3	C2	H2	180.0°	180.0°
C5	O3	C2	H2A	60.0°	60.0°
C5	O3	C2	H2B	60.0°	60.1°
O3	C5	C6	H6	0.8°	0.1°
C4	C5	C6	C7	0.1°	0.0°
C5	C4	O2	HO2	0.0°	90.0°
C5	C4	C3	H3	179.6°	179.9°
C4	C5	C6	H6	179.9°	180.0°
C5	C6	C7	H6	180.0°	180.0°
C5	C6	C7	C8	179.5°	180.0°
C6	C7	C8	C9	7.3°	180.0°
C6	C7	C1	H1	179.1°	179.7°
C6	C7	C8	H8	172.7°	0.1°
C7	C8	C9	H8	180.0°	179.9°
C7	C8	C9	C10	179.7°	180.0°
C8	C7	C1	H1	0.2°	0.3°
C8	C7	C6	H6	0.5°	0.0°
C7	C8	C9	H9	0.3°	0.0°
C8	C9	C10	H9	180.0°	180.0°
C8	C9	C10	H10	134.7°	15.0°
C8	C9	C10	H10A	105.4°	105.0°
C9	C10	O1	HO1	180.0°	180.0°
C10	C9	C8	H8	0.3°	0.1°
C9	C10	H10	H10A	118.7°	120.0°
H1	C1	C3	H3	0.8°	0.4°
HO1	O1	C10	H10	60.0°	60.1°
HO1	O1	C10	H10A	60.0°	59.9°
H2	C2	H2A	H2B	120.0°	120.0°
H8	C8	C9	H9	179.7°	179.9°
H9	C9	C10	H10	45.3°	165.0°
H9	C9	C10	H10A	74.6°	75.0°

225946

PDB entries from 2024-10-09

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