N79
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | sing | 1.61Å | 1.51Å | |
| P | O2P | doub | 1.48Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| P | O3P | sing | 1.61Å | 1.60Å | |
| O5' | C5' | sing | 1.43Å | 1.35Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.44Å | 1.40Å | |
| C3' | C2' | sing | 1.56Å | 1.52Å | |
| O3' | B | sing | 1.37Å | 1.42Å | |
| B | C12 | sing | 1.55Å | 1.49Å | |
| B | O1 | sing | 1.37Å | 1.45Å | |
| B | O2' | sing | 1.37Å | 1.42Å | |
| C12 | C16 | sing | 1.38Å | 1.40Å | Aromatic |
| C12 | C11 | doub | 1.39Å | 1.44Å | Aromatic |
| C16 | C15 | doub | 1.38Å | 1.40Å | Aromatic |
| C15 | C14 | sing | 1.38Å | 1.42Å | Aromatic |
| C14 | C13 | doub | 1.38Å | 1.41Å | Aromatic |
| C13 | C11 | sing | 1.38Å | 1.38Å | Aromatic |
| C11 | C10 | sing | 1.51Å | 1.51Å | |
| C10 | O1 | sing | 1.44Å | 1.46Å | |
| O2' | C2' | sing | 1.44Å | 1.41Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C1' | N9 | sing | 1.47Å | 1.49Å | |
| N9 | C8 | sing | 1.36Å | 1.35Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.34Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.35Å | Aromatic |
| N7 | C5 | sing | 1.35Å | 1.34Å | Aromatic |
| C5 | C4 | sing | 1.41Å | 1.37Å | Aromatic |
| C5 | C6 | doub | 1.41Å | 1.39Å | Aromatic |
| C4 | N3 | doub | 1.33Å | 1.35Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.36Å | |
| C6 | N1 | sing | 1.33Å | 1.35Å | Aromatic |
| N1 | C2 | doub | 1.32Å | 1.33Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
| C2 | HC2 | sing | 1.08Å | 1.08Å | |
| O1P | H1P | sing | 0.97Å | 0.95Å | |
| O3P | H3P | sing | 0.97Å | 0.95Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C16 | H16 | sing | 1.08Å | 1.08Å | |
| C15 | H15 | sing | 1.08Å | 1.08Å | |
| C14 | H14 | sing | 1.08Å | 1.08Å | |
| C13 | H13 | sing | 1.08Å | 1.08Å | |
| C10 | H101 | sing | 1.09Å | 1.10Å | |
| C10 | H102 | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N6 | H61N | sing | 0.97Å | 1.00Å | |
| N6 | H62N | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 123.8° | 109.5° |
| O1P | P | O5' | 109.6° | 109.5° |
| O1P | P | O3P | 109.9° | 109.5° |
| P | O1P | H1P | 109.5° | 113.9° |
| O2P | P | O5' | 101.8° | 109.4° |
| O2P | P | O3P | 111.7° | 109.4° |
| O5' | P | O3P | 95.8° | 109.5° |
| P | O5' | C5' | 117.8° | 123.0° |
| P | O3P | H3P | 109.5° | 113.9° |
| O5' | C5' | C4' | 107.9° | 109.4° |
| O5' | C5' | H5'1 | 109.9° | 109.5° |
| O5' | C5' | H5'2 | 109.9° | 109.4° |
| C5' | C4' | C3' | 102.3° | 110.3° |
| C5' | C4' | O4' | 109.3° | 110.4° |
| C4' | C5' | H5'1 | 109.9° | 109.5° |
| C4' | C5' | H5'2 | 109.8° | 109.5° |
| C5' | C4' | H4' | 111.3° | 110.3° |
| C3' | C4' | O4' | 109.2° | 104.9° |
| C4' | C3' | O3' | 112.3° | 108.6° |
| C4' | C3' | C2' | 102.6° | 103.8° |
| C3' | C4' | H4' | 111.4° | 110.3° |
| C4' | C3' | H3' | 110.3° | 113.1° |
| C4' | O4' | C1' | 109.5° | 105.3° |
| O4' | C4' | H4' | 112.7° | 110.5° |
| O3' | C3' | C2' | 108.9° | 103.1° |
| C3' | O3' | B | 105.5° | 105.1° |
| O3' | C3' | H3' | 112.1° | 113.2° |
| C3' | C2' | O2' | 100.2° | 103.1° |
| C3' | C2' | C1' | 104.3° | 103.9° |
| C2' | C3' | H3' | 110.3° | 114.1° |
| C3' | C2' | H2' | 111.1° | 113.4° |
| O3' | B | C12 | 106.6° | 110.7° |
| O3' | B | O1 | 116.7° | 110.7° |
| O3' | B | O2' | 107.1° | 107.4° |
| C12 | B | O1 | 103.2° | 106.6° |
| C12 | B | O2' | 107.5° | 110.7° |
| B | C12 | C16 | 129.0° | 133.9° |
| B | C12 | C11 | 109.4° | 106.0° |
| O1 | B | O2' | 115.0° | 110.6° |
| B | O1 | C10 | 114.2° | 106.0° |
| B | O2' | C2' | 106.8° | 105.1° |
| C16 | C12 | C11 | 121.5° | 120.1° |
| C12 | C16 | C15 | 119.1° | 119.9° |
| C12 | C16 | H16 | 120.5° | 120.1° |
| C12 | C11 | C13 | 119.5° | 120.0° |
| C12 | C11 | C10 | 109.7° | 106.4° |
| C16 | C15 | C14 | 118.8° | 120.1° |
| C15 | C16 | H16 | 120.4° | 120.1° |
| C16 | C15 | H15 | 120.6° | 120.0° |
| C15 | C14 | C13 | 122.6° | 120.0° |
| C14 | C15 | H15 | 120.6° | 119.9° |
| C15 | C14 | H14 | 118.7° | 120.0° |
| C14 | C13 | C11 | 118.5° | 119.9° |
| C13 | C14 | H14 | 118.7° | 120.0° |
| C14 | C13 | H13 | 120.8° | 120.1° |
| C13 | C11 | C10 | 130.7° | 133.6° |
| C11 | C13 | H13 | 120.7° | 120.0° |
| C11 | C10 | O1 | 102.2° | 106.5° |
| C11 | C10 | H101 | 111.3° | 110.0° |
| C11 | C10 | H102 | 111.3° | 110.0° |
| O1 | C10 | H101 | 111.3° | 110.0° |
| O1 | C10 | H102 | 111.2° | 110.1° |
| O2' | C2' | C1' | 116.7° | 108.6° |
| O2' | C2' | H2' | 112.8° | 113.2° |
| C2' | C1' | O4' | 105.0° | 104.9° |
| C2' | C1' | N9 | 109.4° | 110.4° |
| C1' | C2' | H2' | 110.9° | 113.8° |
| C2' | C1' | H1' | 107.8° | 110.4° |
| O4' | C1' | N9 | 116.5° | 110.4° |
| O4' | C1' | H1' | 109.4° | 110.3° |
| C1' | N9 | C8 | 130.0° | 126.3° |
| C1' | N9 | C4 | 123.3° | 126.2° |
| N9 | C1' | H1' | 108.3° | 110.4° |
| C8 | N9 | C4 | 106.5° | 107.5° |
| N9 | C8 | N7 | 108.6° | 110.0° |
| N9 | C8 | H8 | 125.7° | 125.0° |
| N9 | C4 | C5 | 109.7° | 105.9° |
| N9 | C4 | N3 | 130.2° | 135.0° |
| C8 | N7 | C5 | 109.2° | 109.4° |
| N7 | C8 | H8 | 125.7° | 125.0° |
| N7 | C5 | C4 | 106.0° | 107.2° |
| N7 | C5 | C6 | 134.7° | 134.7° |
| C4 | C5 | C6 | 119.2° | 118.1° |
| C5 | C4 | N3 | 120.2° | 119.1° |
| C5 | C6 | N6 | 124.0° | 120.8° |
| C5 | C6 | N1 | 118.3° | 118.5° |
| C4 | N3 | C2 | 119.7° | 120.6° |
| N6 | C6 | N1 | 117.7° | 120.7° |
| C6 | N6 | H61N | 109.5° | 120.0° |
| C6 | N6 | H62N | 109.5° | 120.0° |
| C6 | N1 | C2 | 121.1° | 121.2° |
| N1 | C2 | N3 | 121.5° | 122.5° |
| N1 | C2 | HC2 | 119.2° | 118.7° |
| N3 | C2 | HC2 | 119.2° | 118.8° |
| H5'1 | C5' | H5'2 | 109.5° | 109.5° |
| H101 | C10 | H102 | 109.5° | 110.1° |
| H61N | N6 | H62N | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O5' | 123.6° | 120.0° |
| O1P | P | O2P | O3P | 135.2° | 120.0° |
| O1P | P | O5' | O3P | 113.6° | 120.1° |
| O1P | P | O5' | C5' | 15.5° | 175.0° |
| O1P | P | O3P | H3P | 141.5° | 60.0° |
| O2P | P | O5' | O3P | 113.7° | 120.0° |
| O2P | P | O5' | C5' | 117.2° | 55.0° |
| O2P | P | O1P | H1P | 0.0° | 60.0° |
| O2P | P | O3P | H3P | 0.0° | 180.0° |
| P | O5' | C5' | C4' | 163.5° | 180.0° |
| O5' | P | O1P | H1P | 120.0° | 179.9° |
| O5' | P | O3P | H3P | 105.2° | 60.0° |
| P | O5' | C5' | H5'1 | 76.7° | 59.9° |
| P | O5' | C5' | H5'2 | 43.8° | 60.1° |
| O3P | P | O5' | C5' | 129.1° | 64.9° |
| O3P | P | O1P | H1P | 135.9° | 60.0° |
| O5' | C5' | C4' | H5'1 | 119.8° | 120.0° |
| O5' | C5' | C4' | H5'2 | 119.8° | 119.9° |
| O5' | C5' | C4' | C3' | 166.9° | 175.0° |
| O5' | C5' | C4' | O4' | 51.3° | 69.5° |
| O5' | C5' | H5'1 | H5'2 | 120.7° | 120.0° |
| O5' | C5' | C4' | H4' | 73.9° | 52.8° |
| C5' | C4' | C3' | O4' | 115.8° | 118.9° |
| C5' | C4' | C3' | H4' | 119.1° | 122.2° |
| C5' | C4' | O4' | H4' | 124.4° | 122.3° |
| C5' | C4' | C3' | O3' | 115.2° | 107.8° |
| C5' | C4' | C3' | C2' | 128.1° | 143.0° |
| C5' | C4' | O4' | C1' | 103.7° | 159.7° |
| C4' | C5' | H5'1 | H5'2 | 120.7° | 120.0° |
| C5' | C4' | C3' | H3' | 10.6° | 18.7° |
| C3' | C4' | O4' | H4' | 124.4° | 118.9° |
| C4' | C3' | O3' | C2' | 112.9° | 109.7° |
| C4' | C3' | O3' | H3' | 124.8° | 126.5° |
| C4' | C3' | C2' | H3' | 117.5° | 123.6° |
| C4' | C3' | O3' | B | 107.7° | 132.8° |
| C4' | C3' | C2' | O2' | 95.3° | 113.3° |
| C4' | C3' | C2' | C1' | 25.8° | 0.0° |
| C3' | C4' | O4' | C1' | 7.5° | 40.8° |
| C3' | C4' | C5' | H5'1 | 47.1° | 65.0° |
| C3' | C4' | C5' | H5'2 | 73.3° | 55.0° |
| C4' | C3' | C2' | H2' | 145.3° | 124.0° |
| O4' | C4' | C3' | O3' | 129.1° | 133.3° |
| O4' | C4' | C3' | C2' | 12.3° | 24.1° |
| C4' | O4' | C1' | C2' | 24.1° | 40.8° |
| C4' | O4' | C1' | N9 | 97.2° | 159.7° |
| O4' | C4' | C5' | H5'1 | 68.5° | 50.5° |
| O4' | C4' | C5' | H5'2 | 171.0° | 170.5° |
| O4' | C4' | C3' | H3' | 105.1° | 100.1° |
| C4' | O4' | C1' | H1' | 139.6° | 78.0° |
| O3' | C3' | C2' | H3' | 123.4° | 123.2° |
| C3' | O3' | B | C12 | 130.7° | 161.2° |
| C3' | O3' | B | O1 | 114.7° | 80.8° |
| C3' | O3' | B | O2' | 15.8° | 40.2° |
| O3' | C3' | C2' | O2' | 23.9° | 0.1° |
| O3' | C3' | C2' | C1' | 145.0° | 113.2° |
| O3' | C3' | C4' | H4' | 3.9° | 14.3° |
| O3' | C3' | C2' | H2' | 95.5° | 122.8° |
| C2' | C3' | O3' | B | 5.2° | 23.1° |
| C3' | C2' | O2' | B | 33.2° | 23.0° |
| C3' | C2' | O2' | C1' | 111.7° | 109.7° |
| C3' | C2' | O2' | H2' | 118.2° | 122.9° |
| C3' | C2' | C1' | H2' | 119.6° | 123.8° |
| C3' | C2' | C1' | O4' | 31.3° | 24.1° |
| C3' | C2' | C1' | N9 | 94.5° | 143.0° |
| C2' | C3' | C4' | H4' | 112.8° | 94.9° |
| C3' | C2' | C1' | H1' | 147.9° | 94.7° |
| O3' | B | C12 | O1 | 123.5° | 120.5° |
| O3' | B | C12 | O2' | 114.6° | 119.1° |
| O3' | B | O1 | O2' | 126.7° | 119.0° |
| O3' | B | C12 | C16 | 48.4° | 41.9° |
| O3' | B | C12 | C11 | 129.8° | 138.2° |
| O3' | B | O1 | C10 | 127.7° | 148.9° |
| O3' | B | O2' | C2' | 32.5° | 40.1° |
| B | O3' | C3' | H3' | 127.5° | 100.7° |
| C12 | B | O1 | O2' | 116.8° | 120.4° |
| B | C12 | C16 | C11 | 178.0° | 180.0° |
| B | C12 | C16 | C15 | 177.7° | 179.9° |
| B | C12 | C11 | C13 | 177.7° | 179.8° |
| B | C12 | C11 | C10 | 0.1° | 0.4° |
| C12 | B | O1 | C10 | 11.2° | 28.4° |
| C12 | B | O2' | C2' | 146.7° | 161.1° |
| B | C12 | C16 | H16 | 2.2° | 0.1° |
| O1 | B | C12 | C16 | 171.9° | 162.4° |
| O1 | B | C12 | C11 | 6.3° | 17.6° |
| B | O1 | C10 | C11 | 11.1° | 28.9° |
| O1 | B | O2' | C2' | 99.0° | 80.9° |
| B | O1 | C10 | H101 | 130.0° | 148.1° |
| B | O1 | C10 | H102 | 107.7° | 90.4° |
| O2' | B | C12 | C16 | 66.2° | 77.2° |
| O2' | B | C12 | C11 | 115.6° | 102.8° |
| O2' | B | O1 | C10 | 105.6° | 92.1° |
| B | O2' | C2' | C1' | 144.9° | 132.7° |
| B | O2' | C2' | H2' | 85.0° | 99.9° |
| C12 | C16 | C15 | H16 | 180.0° | 180.0° |
| C12 | C16 | C15 | C14 | 0.6° | 0.0° |
| C16 | C12 | C11 | C13 | 0.7° | 0.3° |
| C16 | C12 | C11 | C10 | 178.5° | 179.6° |
| C12 | C16 | C15 | H15 | 179.4° | 180.0° |
| C11 | C12 | C16 | C15 | 0.3° | 0.1° |
| C12 | C11 | C13 | C14 | 1.3° | 0.2° |
| C12 | C11 | C13 | C10 | 177.3° | 179.8° |
| C12 | C11 | C10 | O1 | 6.5° | 17.3° |
| C11 | C12 | C16 | H16 | 179.7° | 179.8° |
| C12 | C11 | C13 | H13 | 178.7° | 179.8° |
| C12 | C11 | C10 | H101 | 125.3° | 136.5° |
| C12 | C11 | C10 | H102 | 112.3° | 101.9° |
| C16 | C15 | C14 | H15 | 180.0° | 180.0° |
| C16 | C15 | C14 | C13 | 1.3° | 0.0° |
| C16 | C15 | C14 | H14 | 178.7° | 179.9° |
| C15 | C14 | C13 | H14 | 180.0° | 179.9° |
| C15 | C14 | C13 | C11 | 1.7° | 0.1° |
| C14 | C15 | C16 | H16 | 179.4° | 180.0° |
| C15 | C14 | C13 | H13 | 178.3° | 180.0° |
| C14 | C13 | C11 | H13 | 180.0° | 179.9° |
| C14 | C13 | C11 | C10 | 178.6° | 179.6° |
| C13 | C14 | C15 | H15 | 178.7° | 180.0° |
| C13 | C11 | C10 | O1 | 171.0° | 162.8° |
| C11 | C13 | C14 | H14 | 178.3° | 180.0° |
| C13 | C11 | C10 | H101 | 52.2° | 43.6° |
| C13 | C11 | C10 | H102 | 70.2° | 77.9° |
| C11 | C10 | O1 | H101 | 118.8° | 119.2° |
| C11 | C10 | O1 | H102 | 118.8° | 119.2° |
| C10 | C11 | C13 | H13 | 1.4° | 0.3° |
| C11 | C10 | H101 | H102 | 123.4° | 121.5° |
| O1 | C10 | H101 | H102 | 123.4° | 121.5° |
| O2' | C2' | C1' | H2' | 131.0° | 127.0° |
| O2' | C2' | C1' | O4' | 78.1° | 133.4° |
| O2' | C2' | C1' | N9 | 156.1° | 107.8° |
| O2' | C2' | C3' | H3' | 147.3° | 123.2° |
| O2' | C2' | C1' | H1' | 38.5° | 14.6° |
| C2' | C1' | O4' | N9 | 121.3° | 118.9° |
| C2' | C1' | O4' | H1' | 115.5° | 118.8° |
| C2' | C1' | N9 | H1' | 117.3° | 122.3° |
| C2' | C1' | N9 | C8 | 26.5° | 95.0° |
| C2' | C1' | N9 | C4 | 147.6° | 84.7° |
| C1' | C2' | C3' | H3' | 91.7° | 123.6° |
| O4' | C1' | N9 | H1' | 123.8° | 122.2° |
| O4' | C1' | N9 | C8 | 92.4° | 20.6° |
| O4' | C1' | N9 | C4 | 93.5° | 159.8° |
| C1' | O4' | C4' | H4' | 131.9° | 78.1° |
| O4' | C1' | C2' | H2' | 150.9° | 99.6° |
| C1' | N9 | C8 | C4 | 174.9° | 179.7° |
| C1' | N9 | C8 | N7 | 175.5° | 180.0° |
| C1' | N9 | C4 | C5 | 176.1° | 179.9° |
| C1' | N9 | C4 | N3 | 3.3° | 0.0° |
| N9 | C1' | C2' | H2' | 25.1° | 19.2° |
| C1' | N9 | C8 | H8 | 4.5° | 0.1° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.2° | 0.0° |
| C8 | N9 | C4 | C5 | 0.9° | 0.4° |
| C8 | N9 | C4 | N3 | 178.5° | 179.8° |
| C8 | N9 | C1' | H1' | 143.8° | 142.8° |
| C4 | N9 | C8 | N7 | 0.7° | 0.3° |
| N9 | C4 | C5 | N7 | 0.7° | 0.4° |
| N9 | C4 | C5 | N3 | 179.5° | 179.9° |
| N9 | C4 | C5 | C6 | 179.4° | 179.8° |
| N9 | C4 | N3 | C2 | 179.9° | 179.1° |
| C4 | N9 | C1' | H1' | 30.3° | 37.6° |
| C4 | N9 | C8 | H8 | 179.3° | 179.8° |
| C8 | N7 | C5 | C4 | 0.3° | 0.2° |
| C8 | N7 | C5 | C6 | 178.7° | 180.0° |
| N7 | C5 | C4 | C6 | 178.7° | 179.8° |
| N7 | C5 | C4 | N3 | 178.7° | 179.8° |
| N7 | C5 | C6 | N6 | 3.1° | 0.0° |
| N7 | C5 | C6 | N1 | 178.9° | 180.0° |
| C5 | N7 | C8 | H8 | 179.8° | 179.9° |
| C4 | C5 | C6 | N6 | 178.7° | 179.7° |
| C4 | C5 | C6 | N1 | 0.7° | 0.3° |
| C5 | C4 | N3 | C2 | 0.7° | 0.7° |
| C6 | C5 | C4 | N3 | 0.1° | 0.1° |
| C5 | C6 | N6 | N1 | 178.0° | 180.0° |
| C5 | C6 | N1 | C2 | 0.6° | 0.0° |
| C5 | C6 | N6 | H61N | 178.0° | 0.0° |
| C5 | C6 | N6 | H62N | 57.9° | 180.0° |
| C4 | N3 | C2 | N1 | 0.9° | 1.0° |
| C4 | N3 | C2 | HC2 | 179.1° | 179.7° |
| N6 | C6 | N1 | C2 | 178.7° | 180.0° |
| C6 | N6 | H61N | H62N | 120.0° | 179.9° |
| C6 | N1 | C2 | N3 | 0.2° | 0.7° |
| C6 | N1 | C2 | HC2 | 179.8° | 180.0° |
| N1 | C6 | N6 | H61N | 0.0° | 180.0° |
| N1 | C6 | N6 | H62N | 120.0° | 0.0° |
| N1 | C2 | N3 | HC2 | 180.0° | 179.3° |
| H5'1 | C5' | C4' | H4' | 166.3° | 172.9° |
| H5'2 | C5' | C4' | H4' | 45.8° | 67.1° |
| H4' | C4' | C3' | H3' | 129.7° | 140.9° |
| H3' | C3' | C2' | H2' | 27.9° | 0.4° |
| H2' | C2' | C1' | H1' | 92.5° | 141.5° |
| H16 | C16 | C15 | H15 | 0.6° | 0.0° |
| H15 | C15 | C14 | H14 | 1.3° | 0.1° |
| H14 | C14 | C13 | H13 | 1.6° | 0.0° |
