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Summary Geometry Related PDB entries

N6Y

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	C1	doub	1.38Å	1.38Å	Aromatic
C	C4	sing	1.38Å	1.38Å	Aromatic
N	C1	sing	1.32Å	1.34Å	Aromatic
N	C2	doub	1.32Å	1.34Å	Aromatic
N1	C7	sing	1.40Å	1.38Å
C2	C3	sing	1.39Å	1.39Å	Aromatic
C3	C4	doub	1.40Å	1.39Å	Aromatic
C3	C5	sing	1.48Å	1.48Å
C5	C6	doub	1.39Å	1.40Å	Aromatic
C5	C10	sing	1.39Å	1.39Å	Aromatic
C6	C7	sing	1.39Å	1.40Å	Aromatic
C7	C8	doub	1.39Å	1.39Å	Aromatic
C8	C9	sing	1.38Å	1.38Å	Aromatic
C9	C10	doub	1.38Å	1.38Å	Aromatic
C	H	sing	1.08Å	1.08Å
C1	H1	sing	1.08Å	1.08Å
N1	HN1	sing	0.97Å	1.00Å
N1	HN1A	sing	0.97Å	1.00Å
C2	H2	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å
C10	H10	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	C	C4	118.4°	119.3°
C	C1	N	123.4°	121.0°
C1	C	H	120.8°	120.3°
C	C1	H1	118.3°	119.5°
C	C4	C3	120.1°	118.3°
C4	C	H	120.8°	120.4°
C	C4	H4	120.0°	120.9°
C1	N	C2	117.2°	121.9°
N	C1	H1	118.3°	119.5°
N	C2	C3	124.4°	120.6°
N	C2	H2	117.8°	119.7°
N1	C7	C6	120.2°	120.0°
N1	C7	C8	120.8°	120.0°
C7	N1	HN1	109.5°	120.0°
C7	N1	HN1A	109.5°	120.0°
C2	C3	C4	116.6°	118.9°
C2	C3	C5	122.0°	120.5°
C3	C2	H2	117.8°	119.7°
C4	C3	C5	121.4°	120.6°
C3	C4	H4	120.0°	120.8°
C3	C5	C6	119.9°	120.1°
C3	C5	C10	121.3°	120.0°
C6	C5	C10	118.7°	119.9°
C5	C6	C7	120.9°	119.8°
C5	C6	H6	119.6°	120.1°
C5	C10	C9	120.9°	120.0°
C5	C10	H10	119.5°	120.0°
C6	C7	C8	119.0°	119.9°
C7	C6	H6	119.5°	120.1°
C7	C8	C9	120.5°	120.2°
C7	C8	H8	119.7°	119.9°
C8	C9	C10	120.0°	120.2°
C9	C8	H8	119.8°	119.9°
C8	C9	H9	120.0°	119.9°
C10	C9	H9	120.0°	119.9°
C9	C10	H10	119.6°	120.1°
HN1	N1	HN1A	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	C	C4	H	180.0°	179.6°
C	C1	N	H1	180.0°	180.0°
C	C1	N	C2	0.4°	0.0°
C1	C	C4	C3	0.1°	0.1°
C1	C	C4	H4	179.9°	180.0°
C4	C	C1	N	0.5°	0.1°
C	C4	C3	C2	0.4°	0.0°
C	C4	C3	H4	180.0°	179.9°
C	C4	C3	C5	178.0°	180.0°
C4	C	C1	H1	179.5°	180.0°
C1	N	C2	C3	0.2°	0.0°
N	C1	C	H	179.5°	179.7°
C1	N	C2	H2	179.8°	179.9°
N	C2	C3	H2	180.0°	180.0°
N	C2	C3	C4	0.6°	0.0°
N	C2	C3	C5	177.8°	180.0°
C2	N	C1	H1	179.6°	180.0°
N1	C7	C6	C5	178.9°	180.0°
N1	C7	C6	C8	179.2°	180.0°
N1	C7	C8	C9	178.4°	180.0°
C7	N1	HN1	HN1A	120.0°	179.9°
N1	C7	C6	H6	1.1°	0.0°
N1	C7	C8	H8	1.6°	0.0°
C2	C3	C4	C5	178.4°	180.0°
C2	C3	C5	C6	1.3°	0.0°
C2	C3	C5	C10	177.6°	179.7°
C2	C3	C4	H4	179.6°	180.0°
C4	C3	C5	C6	179.6°	180.0°
C4	C3	C5	C10	0.7°	0.3°
C3	C4	C	H	179.9°	179.7°
C4	C3	C2	H2	179.4°	180.0°
C3	C5	C6	C10	178.9°	179.8°
C3	C5	C6	C7	179.1°	180.0°
C3	C5	C10	C9	179.1°	179.7°
C5	C3	C2	H2	2.2°	0.0°
C5	C3	C4	H4	2.0°	0.0°
C3	C5	C6	H6	0.9°	0.0°
C3	C5	C10	H10	0.9°	0.0°
C5	C6	C7	H6	180.0°	180.0°
C5	C6	C7	C8	0.3°	0.0°
C6	C5	C10	C9	0.2°	0.6°
C6	C5	C10	H10	179.8°	179.8°
C10	C5	C6	C7	0.2°	0.2°
C5	C10	C9	C8	0.3°	0.6°
C5	C10	C9	H10	180.0°	179.7°
C10	C5	C6	H6	179.8°	179.8°
C5	C10	C9	H9	179.7°	179.7°
C6	C7	C8	C9	0.8°	0.0°
C6	C7	N1	HN1	180.0°	0.0°
C6	C7	N1	HN1A	60.0°	179.9°
C6	C7	C8	H8	179.2°	179.9°
C7	C8	C9	H8	180.0°	179.9°
C7	C8	C9	C10	0.8°	0.3°
C8	C7	N1	HN1	0.8°	180.0°
C8	C7	N1	HN1A	120.8°	0.0°
C8	C7	C6	H6	179.7°	180.0°
C7	C8	C9	H9	179.2°	180.0°
C8	C9	C10	H9	180.0°	179.7°
C8	C9	C10	H10	179.7°	179.7°
C10	C9	C8	H8	179.2°	179.7°
H	C	C1	H1	0.5°	0.3°
H	C	C4	H4	0.1°	0.4°
H8	C8	C9	H9	0.8°	0.0°
H9	C9	C10	H10	0.3°	0.0°

225946

PDB entries from 2024-10-09

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