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N5V

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5C4doub1.33Å1.35ÅAromatic
C5Ssing1.76Å1.72ÅAromatic
C4N2sing1.32Å1.43ÅAromatic
N2C3doub1.30Å1.36ÅAromatic
SC3sing1.71Å1.78ÅAromatic
C3N1sing1.39Å1.39Å
N1C2sing1.35Å1.45Å
OC2doub1.22Å1.24Å
C2Nsing1.35Å1.40Å
NC1sing1.46Å1.46Å
C1Csing1.53Å1.53Å
N1H1sing0.97Å1.00Å
C4H2sing1.08Å1.08Å
C5H3sing1.08Å1.08Å
NH4sing0.97Å1.00Å
CH5sing1.09Å1.10Å
CH6sing1.09Å1.10Å
CH7sing1.09Å1.10Å
C1H8sing1.09Å1.10Å
C1H9sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4C5S111.7°108.1°
C5C4N2116.2°114.6°
C5C4H2121.9°122.7°
C4C5H3124.2°126.0°
C5SC389.9°90.4°
SC5H3124.2°125.9°
C4N2C3109.0°116.9°
N2C4H2121.9°122.7°
N2C3S113.2°110.1°
N2C3N1126.9°124.9°
SC3N1119.7°125.0°
C3N1C2123.1°120.0°
C3N1H1118.4°120.0°
N1C2O124.3°120.0°
N1C2N113.5°120.0°
C2N1H1118.5°120.0°
OC2N122.2°120.0°
C2NC1118.4°120.0°
C2NH4120.8°120.0°
NC1C111.3°109.5°
C1NH4120.8°120.0°
NC1H8109.0°109.5°
NC1H9109.0°109.4°
C1CH5109.5°109.5°
C1CH6109.5°109.5°
C1CH7109.5°109.5°
CC1H8109.0°109.5°
CC1H9109.0°109.5°
H5CH6109.5°109.5°
H5CH7109.5°109.5°
H6CH7109.4°109.5°
H8C1H9109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C4C5SH3180.0°179.9°
C5C4N2H2180.0°179.7°
C5C4N2C30.1°0.3°
C4C5SC32.2°0.2°
SC5C4N21.7°0.0°
C5SC3N22.3°0.3°
C5SC3N1173.1°179.9°
SC5C4H2178.3°179.7°
C4N2C3S1.7°0.4°
C4N2C3N1173.2°180.0°
N2C4C5H3178.3°180.0°
N2C3SN1175.4°179.5°
N2C3N1C2164.5°180.0°
N2C3N1H115.5°0.3°
C3N2C4H2179.9°180.0°
SC3N1C210.2°0.5°
SC3N1H1169.8°179.8°
C3SC5H3177.8°179.8°
C3N1C2H1180.0°179.7°
C3N1C2O10.1°0.3°
C3N1C2N170.4°179.7°
N1C2ON179.5°180.0°
N1C2NC1117.8°180.0°
N1C2NH462.2°0.0°
OC2NC161.7°0.0°
OC2N1H1170.0°180.0°
OC2NH4118.2°179.9°
C2NC1H4180.0°179.9°
C2NC1C109.0°180.0°
NC2N1H19.5°0.0°
C2NC1H811.3°60.0°
C2NC1H9130.7°60.0°
NC1CH8120.3°120.0°
NC1CH9120.3°120.0°
NC1CH5180.0°60.0°
NC1CH660.0°180.0°
NC1CH760.0°60.0°
NC1H8H9119.2°120.0°
CC1NH470.9°0.1°
C1CH5H6120.0°120.0°
C1CH5H7120.0°120.0°
C1CH6H7120.0°120.0°
CC1H8H9119.2°120.0°
H2C4C5H31.7°0.3°
H4NC1H8168.8°120.0°
H4NC1H949.3°120.1°
H5CH6H7120.0°120.0°
H5CC1H859.7°60.0°
H5CC1H959.7°180.0°
H6CC1H8179.8°60.0°
H6CC1H960.3°60.0°
H7CC1H860.3°180.0°
H7CC1H9179.8°60.0°

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PDB entries from 2024-07-17

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