N5P
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OR2 | NRO | doub | 1.22Å | 1.22Å | |
| NRO | CZ3 | sing | 1.48Å | 1.46Å | |
| NRO | OR1 | sing | 1.22Å | 1.22Å | |
| CZ3 | CH2 | sing | 1.39Å | 1.40Å | Aromatic |
| CZ3 | CE3 | doub | 1.37Å | 1.39Å | Aromatic |
| CE3 | CD2 | sing | 1.40Å | 1.40Å | Aromatic |
| CE3 | HE3 | sing | 1.08Å | 1.08Å | |
| CD2 | CE2 | doub | 1.41Å | 1.42Å | Aromatic |
| CD2 | CG | sing | 1.46Å | 1.43Å | Aromatic |
| CH2 | CZ2 | doub | 1.38Å | 1.37Å | Aromatic |
| CH2 | HH2 | sing | 1.08Å | 1.08Å | |
| CZ2 | CE2 | sing | 1.39Å | 1.41Å | Aromatic |
| CZ2 | HZ2 | sing | 1.08Å | 1.08Å | |
| CE2 | NE1 | sing | 1.38Å | 1.37Å | Aromatic |
| NE1 | C1' | sing | 1.46Å | 1.49Å | |
| NE1 | CD1 | sing | 1.37Å | 1.37Å | Aromatic |
| CD1 | CG | doub | 1.34Å | 1.37Å | Aromatic |
| CD1 | HD1 | sing | 1.08Å | 1.08Å | |
| CG | HG | sing | 1.08Å | 1.08Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O4' | C4' | sing | 1.44Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| O5' | PA | sing | 1.61Å | 1.61Å | |
| PA | O3A | sing | 1.61Å | 1.61Å | |
| PA | O1A | doub | 1.48Å | 1.51Å | |
| PA | O2A | sing | 1.61Å | 1.51Å | |
| O2A | HO2A | sing | 0.97Å | 0.95Å | |
| O3A | PB | sing | 1.61Å | 1.61Å | |
| PB | O1B | doub | 1.48Å | 1.51Å | |
| PB | O3B | sing | 1.61Å | 1.61Å | |
| PB | O2B | sing | 1.61Å | 1.51Å | |
| O2B | HO2B | sing | 0.97Å | 0.95Å | |
| O3B | PG | sing | 1.61Å | 1.61Å | |
| PG | O1G | doub | 1.48Å | 1.51Å | |
| PG | O3G | sing | 1.61Å | 1.51Å | |
| PG | O2G | sing | 1.61Å | 1.52Å | |
| O3G | HOG3 | sing | 0.97Å | 0.95Å | |
| O2G | HOG2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OR2 | NRO | CZ3 | 120.6° | 120.0° |
| OR2 | NRO | OR1 | 119.0° | 120.0° |
| CZ3 | NRO | OR1 | 120.4° | 119.9° |
| NRO | CZ3 | CH2 | 118.6° | 119.7° |
| NRO | CZ3 | CE3 | 118.9° | 119.8° |
| CH2 | CZ3 | CE3 | 122.5° | 120.5° |
| CZ3 | CH2 | CZ2 | 120.8° | 120.7° |
| CZ3 | CH2 | HH2 | 119.6° | 119.7° |
| CZ3 | CE3 | CD2 | 118.0° | 119.7° |
| CZ3 | CE3 | HE3 | 121.0° | 120.1° |
| CD2 | CE3 | HE3 | 121.0° | 120.1° |
| CE3 | CD2 | CE2 | 118.8° | 120.0° |
| CE3 | CD2 | CG | 134.0° | 134.0° |
| CE2 | CD2 | CG | 107.2° | 106.1° |
| CD2 | CE2 | CZ2 | 122.5° | 119.3° |
| CD2 | CE2 | NE1 | 107.0° | 107.2° |
| CD2 | CG | CD1 | 106.4° | 107.0° |
| CD2 | CG | HG | 126.8° | 126.5° |
| CZ2 | CH2 | HH2 | 119.6° | 119.6° |
| CH2 | CZ2 | CE2 | 117.4° | 119.8° |
| CH2 | CZ2 | HZ2 | 121.3° | 120.2° |
| CE2 | CZ2 | HZ2 | 121.3° | 120.1° |
| CZ2 | CE2 | NE1 | 130.5° | 133.5° |
| CE2 | NE1 | C1' | 127.5° | 125.1° |
| CE2 | NE1 | CD1 | 109.5° | 109.9° |
| C1' | NE1 | CD1 | 123.0° | 125.0° |
| NE1 | C1' | C2' | 114.2° | 109.9° |
| NE1 | C1' | O4' | 109.5° | 109.9° |
| NE1 | C1' | H1' | 105.2° | 109.9° |
| NE1 | CD1 | CG | 109.9° | 109.9° |
| NE1 | CD1 | HD1 | 125.1° | 125.0° |
| CG | CD1 | HD1 | 125.0° | 125.0° |
| CD1 | CG | HG | 126.8° | 126.5° |
| C2' | C1' | O4' | 106.4° | 107.3° |
| C2' | C1' | H1' | 108.4° | 109.9° |
| C1' | C2' | C3' | 103.5° | 104.2° |
| C1' | C2' | H2'1 | 111.5° | 110.5° |
| C1' | C2' | H2'2 | 111.5° | 110.5° |
| O4' | C1' | H1' | 113.3° | 110.0° |
| C1' | O4' | C4' | 110.5° | 107.0° |
| O4' | C4' | C3' | 105.0° | 103.5° |
| O4' | C4' | C5' | 109.3° | 110.6° |
| O4' | C4' | H4' | 115.1° | 110.6° |
| C3' | C4' | C5' | 116.1° | 110.7° |
| C3' | C4' | H4' | 108.1° | 110.7° |
| C4' | C3' | C2' | 102.0° | 102.1° |
| C4' | C3' | O3' | 110.5° | 110.9° |
| C4' | C3' | H3' | 114.2° | 110.9° |
| C5' | C4' | H4' | 103.7° | 110.7° |
| C4' | C5' | O5' | 110.6° | 109.5° |
| C4' | C5' | H5'1 | 109.1° | 109.4° |
| C4' | C5' | H5'2 | 109.1° | 109.5° |
| C2' | C3' | O3' | 111.1° | 110.9° |
| C2' | C3' | H3' | 113.6° | 110.9° |
| C3' | C2' | H2'1 | 111.5° | 110.5° |
| C3' | C2' | H2'2 | 111.5° | 110.5° |
| O3' | C3' | H3' | 105.6° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| H2'1 | C2' | H2'2 | 107.4° | 110.5° |
| O5' | C5' | H5'1 | 109.1° | 109.5° |
| O5' | C5' | H5'2 | 109.1° | 109.5° |
| C5' | O5' | PA | 121.2° | 123.0° |
| H5'1 | C5' | H5'2 | 109.8° | 109.5° |
| O5' | PA | O3A | 107.5° | 109.5° |
| O5' | PA | O1A | 108.1° | 109.4° |
| O5' | PA | O2A | 107.4° | 109.5° |
| O3A | PA | O1A | 107.3° | 109.5° |
| O3A | PA | O2A | 107.2° | 109.5° |
| PA | O3A | PB | 122.1° | 134.0° |
| O1A | PA | O2A | 119.0° | 109.5° |
| PA | O2A | HO2A | 109.5° | 114.0° |
| O3A | PB | O1B | 107.9° | 109.5° |
| O3A | PB | O3B | 101.9° | 109.5° |
| O3A | PB | O2B | 110.2° | 109.5° |
| O1B | PB | O3B | 108.1° | 109.4° |
| O1B | PB | O2B | 119.1° | 109.4° |
| O3B | PB | O2B | 108.2° | 109.5° |
| PB | O3B | PG | 122.5° | 134.0° |
| PB | O2B | HO2B | 109.5° | 114.0° |
| O3B | PG | O1G | 103.7° | 109.5° |
| O3B | PG | O3G | 103.6° | 109.5° |
| O3B | PG | O2G | 106.2° | 109.5° |
| O1G | PG | O3G | 114.0° | 109.5° |
| O1G | PG | O2G | 114.4° | 109.4° |
| O3G | PG | O2G | 113.6° | 109.4° |
| PG | O3G | HOG3 | 109.5° | 114.0° |
| PG | O2G | HOG2 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OR2 | NRO | CZ3 | OR1 | 179.7° | 179.7° |
| OR2 | NRO | CZ3 | CH2 | 0.6° | 0.1° |
| OR2 | NRO | CZ3 | CE3 | 179.8° | 179.7° |
| NRO | CZ3 | CH2 | CE3 | 179.2° | 179.8° |
| NRO | CZ3 | CE3 | CD2 | 179.8° | 180.0° |
| NRO | CZ3 | CE3 | HE3 | 0.2° | 0.0° |
| NRO | CZ3 | CH2 | CZ2 | 179.7° | 180.0° |
| NRO | CZ3 | CH2 | HH2 | 0.3° | 0.1° |
| OR1 | NRO | CZ3 | CH2 | 179.7° | 179.7° |
| OR1 | NRO | CZ3 | CE3 | 0.5° | 0.0° |
| CH2 | CZ3 | CE3 | CD2 | 0.6° | 0.2° |
| CH2 | CZ3 | CE3 | HE3 | 179.4° | 179.8° |
| CZ3 | CH2 | CZ2 | HH2 | 180.0° | 179.9° |
| CZ3 | CH2 | CZ2 | CE2 | 0.2° | 0.1° |
| CZ3 | CH2 | CZ2 | HZ2 | 179.8° | 180.0° |
| CZ3 | CE3 | CD2 | HE3 | 180.0° | 180.0° |
| CZ3 | CE3 | CD2 | CE2 | 0.1° | 0.0° |
| CZ3 | CE3 | CD2 | CG | 179.9° | 180.0° |
| CE3 | CZ3 | CH2 | CZ2 | 0.5° | 0.2° |
| CE3 | CZ3 | CH2 | HH2 | 179.5° | 179.7° |
| CE3 | CD2 | CE2 | CG | 180.0° | 180.0° |
| CE3 | CD2 | CE2 | CZ2 | 0.6° | 0.3° |
| CE3 | CD2 | CE2 | NE1 | 179.9° | 180.0° |
| CE3 | CD2 | CG | CD1 | 179.9° | 180.0° |
| CE3 | CD2 | CG | HG | 0.1° | 0.0° |
| HE3 | CE3 | CD2 | CE2 | 179.9° | 180.0° |
| HE3 | CE3 | CD2 | CG | 0.1° | 0.0° |
| CD2 | CE2 | CZ2 | CH2 | 0.8° | 0.3° |
| CD2 | CE2 | CZ2 | NE1 | 179.0° | 179.6° |
| CD2 | CE2 | CZ2 | HZ2 | 179.2° | 179.7° |
| CD2 | CE2 | NE1 | C1' | 179.8° | 180.0° |
| CD2 | CE2 | NE1 | CD1 | 0.1° | 0.0° |
| CE2 | CD2 | CG | CD1 | 0.1° | 0.0° |
| CE2 | CD2 | CG | HG | 179.9° | 180.0° |
| CG | CD2 | CE2 | CZ2 | 179.4° | 179.7° |
| CG | CD2 | CE2 | NE1 | 0.2° | 0.0° |
| CD2 | CG | CD1 | NE1 | 0.1° | 0.0° |
| CD2 | CG | CD1 | HG | 180.0° | 180.0° |
| CD2 | CG | CD1 | HD1 | 180.0° | 180.0° |
| CH2 | CZ2 | CE2 | HZ2 | 180.0° | 180.0° |
| CH2 | CZ2 | CE2 | NE1 | 179.8° | 179.9° |
| HH2 | CH2 | CZ2 | CE2 | 179.8° | 180.0° |
| HH2 | CH2 | CZ2 | HZ2 | 0.2° | 0.0° |
| CZ2 | CE2 | NE1 | C1' | 0.7° | 0.4° |
| CZ2 | CE2 | NE1 | CD1 | 179.3° | 179.7° |
| HZ2 | CZ2 | CE2 | NE1 | 0.2° | 0.1° |
| CE2 | NE1 | C1' | CD1 | 180.0° | 180.0° |
| CE2 | NE1 | CD1 | CG | 0.1° | 0.0° |
| CE2 | NE1 | CD1 | HD1 | 179.9° | 180.0° |
| CE2 | NE1 | C1' | C2' | 57.5° | 85.0° |
| CE2 | NE1 | C1' | O4' | 176.7° | 157.2° |
| CE2 | NE1 | C1' | H1' | 61.3° | 36.0° |
| C1' | NE1 | CD1 | CG | 179.9° | 180.0° |
| C1' | NE1 | CD1 | HD1 | 0.1° | 0.0° |
| NE1 | C1' | C2' | O4' | 120.9° | 119.4° |
| NE1 | C1' | C2' | H1' | 117.0° | 121.0° |
| NE1 | C1' | O4' | H1' | 117.1° | 121.1° |
| NE1 | C1' | O4' | C4' | 121.5° | 145.9° |
| NE1 | C1' | C2' | C3' | 140.5° | 121.5° |
| NE1 | C1' | C2' | H2'1 | 99.5° | 119.8° |
| NE1 | C1' | C2' | H2'2 | 20.5° | 2.8° |
| NE1 | CD1 | CG | HD1 | 180.0° | 180.0° |
| NE1 | CD1 | CG | HG | 179.9° | 180.0° |
| CD1 | NE1 | C1' | C2' | 122.6° | 95.0° |
| CD1 | NE1 | C1' | O4' | 3.4° | 22.9° |
| CD1 | NE1 | C1' | H1' | 118.7° | 144.0° |
| HD1 | CD1 | CG | HG | 0.0° | 0.0° |
| C2' | C1' | O4' | H1' | 119.0° | 119.5° |
| C2' | C1' | O4' | C4' | 2.5° | 26.5° |
| C1' | C2' | C3' | C4' | 32.5° | 20.9° |
| C1' | C2' | C3' | H2'1 | 120.0° | 118.7° |
| C1' | C2' | C3' | H2'2 | 120.0° | 118.7° |
| C1' | C2' | C3' | O3' | 85.3° | 139.1° |
| C1' | C2' | C3' | H3' | 155.8° | 97.3° |
| C1' | C2' | H2'1 | H2'2 | 122.4° | 122.6° |
| C1' | O4' | C4' | C3' | 23.6° | 40.0° |
| C1' | O4' | C4' | C5' | 101.5° | 158.6° |
| C1' | O4' | C4' | H4' | 142.3° | 78.5° |
| O4' | C1' | C2' | C3' | 19.5° | 2.1° |
| O4' | C1' | C2' | H2'1 | 139.5° | 120.7° |
| O4' | C1' | C2' | H2'2 | 100.4° | 116.7° |
| H1' | C1' | O4' | C4' | 121.5° | 93.0° |
| H1' | C1' | C2' | C3' | 102.6° | 117.5° |
| H1' | C1' | C2' | H2'1 | 17.4° | 1.2° |
| H1' | C1' | C2' | H2'2 | 137.4° | 123.8° |
| O4' | C4' | C3' | C5' | 120.7° | 118.5° |
| O4' | C4' | C3' | H4' | 123.3° | 118.5° |
| O4' | C4' | C5' | H4' | 123.2° | 122.9° |
| O4' | C4' | C3' | C2' | 34.6° | 37.0° |
| O4' | C4' | C3' | O3' | 83.6° | 155.2° |
| O4' | C4' | C3' | H3' | 157.6° | 81.2° |
| O4' | C4' | C5' | O5' | 172.3° | 66.4° |
| O4' | C4' | C5' | H5'1 | 67.7° | 173.6° |
| O4' | C4' | C5' | H5'2 | 52.4° | 53.6° |
| C3' | C4' | C5' | H4' | 118.4° | 123.0° |
| C4' | C3' | C2' | O3' | 117.8° | 118.2° |
| C4' | C3' | C2' | H3' | 123.4° | 118.2° |
| C4' | C3' | O3' | H3' | 123.9° | 123.6° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | H2'1 | 152.5° | 97.8° |
| C4' | C3' | C2' | H2'2 | 87.5° | 139.6° |
| C3' | C4' | C5' | O5' | 69.3° | 179.5° |
| C3' | C4' | C5' | H5'1 | 50.7° | 59.5° |
| C3' | C4' | C5' | H5'2 | 170.7° | 60.5° |
| C5' | C4' | C3' | C2' | 86.1° | 155.5° |
| C5' | C4' | C3' | O3' | 155.7° | 86.3° |
| C5' | C4' | C3' | H3' | 36.9° | 37.3° |
| C4' | C5' | O5' | H5'1 | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'2 | 120.0° | 120.0° |
| C4' | C5' | H5'1 | H5'2 | 119.5° | 120.0° |
| C4' | C5' | O5' | PA | 170.0° | 180.0° |
| H4' | C4' | C3' | C2' | 157.9° | 81.5° |
| H4' | C4' | C3' | O3' | 39.7° | 36.7° |
| H4' | C4' | C3' | H3' | 79.1° | 160.3° |
| H4' | C4' | C5' | O5' | 49.1° | 56.4° |
| H4' | C4' | C5' | H5'1 | 169.1° | 63.5° |
| H4' | C4' | C5' | H5'2 | 70.9° | 176.5° |
| C2' | C3' | O3' | H3' | 123.6° | 123.6° |
| C2' | C3' | O3' | HO3' | 67.5° | 67.2° |
| C3' | C2' | H2'1 | H2'2 | 122.4° | 122.6° |
| O3' | C3' | C2' | H2'1 | 34.7° | 20.4° |
| O3' | C3' | C2' | H2'2 | 154.7° | 102.2° |
| H3' | C3' | O3' | HO3' | 56.1° | 56.4° |
| H3' | C3' | C2' | H2'1 | 84.2° | 144.0° |
| H3' | C3' | C2' | H2'2 | 35.8° | 21.4° |
| O5' | C5' | H5'1 | H5'2 | 119.5° | 120.0° |
| C5' | O5' | PA | O3A | 164.0° | 175.0° |
| C5' | O5' | PA | O1A | 48.6° | 55.0° |
| C5' | O5' | PA | O2A | 81.0° | 64.9° |
| H5'1 | C5' | O5' | PA | 69.9° | 60.1° |
| H5'2 | C5' | O5' | PA | 50.1° | 60.0° |
| O5' | PA | O3A | O1A | 116.0° | 120.0° |
| O5' | PA | O3A | O2A | 115.1° | 120.0° |
| O5' | PA | O1A | O2A | 122.7° | 120.0° |
| O5' | PA | O2A | HO2A | 123.1° | 60.1° |
| O5' | PA | O3A | PB | 10.6° | 165.0° |
| O3A | PA | O1A | O2A | 121.7° | 120.0° |
| O3A | PA | O2A | HO2A | 121.7° | 59.9° |
| PA | O3A | PB | O1B | 106.0° | 45.0° |
| PA | O3A | PB | O3B | 140.3° | 165.0° |
| PA | O3A | PB | O2B | 25.6° | 75.0° |
| O1A | PA | O2A | HO2A | 0.0° | 180.0° |
| O1A | PA | O3A | PB | 126.7° | 45.0° |
| O2A | PA | O3A | PB | 104.5° | 75.0° |
| O3A | PB | O1B | O3B | 109.5° | 120.0° |
| O3A | PB | O1B | O2B | 126.5° | 120.0° |
| O3A | PB | O3B | O2B | 116.1° | 120.0° |
| O3A | PB | O2B | HO2B | 125.4° | 60.0° |
| O3A | PB | O3B | PG | 89.6° | 160.0° |
| O1B | PB | O3B | O2B | 130.4° | 120.0° |
| O1B | PB | O2B | HO2B | 0.0° | 180.0° |
| O1B | PB | O3B | PG | 156.9° | 40.0° |
| O3B | PB | O2B | HO2B | 124.0° | 60.0° |
| PB | O3B | PG | O1G | 99.4° | 45.0° |
| PB | O3B | PG | O3G | 141.3° | 165.0° |
| PB | O3B | PG | O2G | 21.4° | 75.0° |
| O2B | PB | O3B | PG | 26.5° | 80.0° |
| O3B | PG | O1G | O3G | 111.9° | 120.0° |
| O3B | PG | O1G | O2G | 115.1° | 120.0° |
| O3B | PG | O3G | O2G | 114.7° | 120.0° |
| O3B | PG | O3G | HOG3 | 112.0° | 180.0° |
| O3B | PG | O2G | HOG2 | 113.7° | 60.0° |
| O1G | PG | O3G | O2G | 133.4° | 120.0° |
| O1G | PG | O3G | HOG3 | 0.0° | 60.0° |
| O1G | PG | O2G | HOG2 | 0.0° | 180.0° |
| O3G | PG | O2G | HOG2 | 133.2° | 60.0° |
| O2G | PG | O3G | HOG3 | 133.4° | 60.0° |
