N5O
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O53 | C52 | sing | 1.43Å | 1.43Å | |
O53 | HO53 | sing | 0.97Å | 0.95Å | |
C52 | C51 | sing | 1.53Å | 1.53Å | |
C52 | H521 | sing | 1.09Å | 1.10Å | |
C52 | H522 | sing | 1.09Å | 1.10Å | |
C51 | N5' | sing | 1.47Å | 1.47Å | |
C51 | H511 | sing | 1.09Å | 1.10Å | |
C51 | H512 | sing | 1.09Å | 1.10Å | |
N5' | C5' | sing | 1.35Å | 1.33Å | |
N5' | HN5' | sing | 0.97Å | 1.00Å | |
C5' | O5' | doub | 1.21Å | 1.36Å | |
C5' | C4' | sing | 1.51Å | 1.53Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | C1' | sing | 1.44Å | 1.44Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | C1' | sing | 1.55Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.48Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
N9 | C8 | sing | 1.36Å | 1.33Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.33Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.33Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
N7 | C5 | sing | 1.35Å | 1.33Å | Aromatic |
C5 | C4 | doub | 1.41Å | 1.39Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.50Å | Aromatic |
C4 | N3 | sing | 1.33Å | 1.34Å | Aromatic |
N3 | C2 | doub | 1.32Å | 1.32Å | Aromatic |
C2 | N1 | sing | 1.32Å | 1.32Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.08Å | |
N1 | C6 | doub | 1.33Å | 1.34Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.33Å | |
N6 | HN61 | sing | 0.97Å | 1.00Å | |
N6 | HN62 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C52 | O53 | HO53 | 109.5° | 106.8° |
O53 | C52 | C51 | 109.8° | 109.5° |
O53 | C52 | H521 | 109.3° | 109.4° |
O53 | C52 | H522 | 109.4° | 109.5° |
C51 | C52 | H521 | 109.3° | 109.5° |
C51 | C52 | H522 | 109.3° | 109.5° |
C52 | C51 | N5' | 109.9° | 109.5° |
C52 | C51 | H511 | 109.2° | 109.5° |
C52 | C51 | H512 | 109.3° | 109.5° |
H521 | C52 | H522 | 109.7° | 109.5° |
N5' | C51 | H511 | 109.3° | 109.5° |
N5' | C51 | H512 | 109.3° | 109.4° |
C51 | N5' | C5' | 111.8° | 120.0° |
C51 | N5' | HN5' | 124.1° | 120.0° |
H511 | C51 | H512 | 109.8° | 109.5° |
C5' | N5' | HN5' | 124.1° | 120.0° |
N5' | C5' | O5' | 121.1° | 120.1° |
N5' | C5' | C4' | 119.5° | 120.0° |
O5' | C5' | C4' | 119.5° | 120.0° |
C5' | C4' | O4' | 109.4° | 110.4° |
C5' | C4' | C3' | 109.5° | 110.4° |
C5' | C4' | H4' | 108.7° | 110.4° |
O4' | C4' | C3' | 106.9° | 104.8° |
O4' | C4' | H4' | 111.3° | 110.4° |
C4' | O4' | C1' | 109.5° | 105.3° |
C3' | C4' | H4' | 111.1° | 110.4° |
C4' | C3' | O3' | 109.3° | 110.5° |
C4' | C3' | C2' | 102.6° | 104.1° |
C4' | C3' | H3' | 113.9° | 110.5° |
O4' | C1' | C2' | 107.6° | 104.9° |
O4' | C1' | N9 | 109.9° | 110.4° |
O4' | C1' | H1' | 110.9° | 110.4° |
O3' | C3' | C2' | 109.4° | 110.5° |
O3' | C3' | H3' | 107.7° | 110.5° |
C3' | O3' | HO3' | 109.5° | 106.8° |
C2' | C3' | H3' | 113.8° | 110.6° |
C3' | C2' | O2' | 109.8° | 110.5° |
C3' | C2' | C1' | 102.9° | 104.0° |
C3' | C2' | H2' | 113.5° | 110.4° |
O2' | C2' | C1' | 109.6° | 110.8° |
O2' | C2' | H2' | 107.3° | 110.5° |
C2' | O2' | HO2' | 109.5° | 106.8° |
C1' | C2' | H2' | 113.7° | 110.4° |
C2' | C1' | N9 | 110.7° | 110.4° |
C2' | C1' | H1' | 110.1° | 110.4° |
N9 | C1' | H1' | 107.8° | 110.4° |
C1' | N9 | C8 | 126.2° | 126.3° |
C1' | N9 | C4 | 125.6° | 126.3° |
C8 | N9 | C4 | 108.1° | 107.5° |
N9 | C8 | N7 | 109.7° | 110.0° |
N9 | C8 | H8 | 125.1° | 125.0° |
N9 | C4 | C5 | 106.8° | 106.0° |
N9 | C4 | N3 | 133.7° | 135.0° |
N7 | C8 | H8 | 125.2° | 125.0° |
C8 | N7 | C5 | 107.5° | 109.4° |
N7 | C5 | C4 | 107.8° | 107.2° |
N7 | C5 | C6 | 135.5° | 134.7° |
C4 | C5 | C6 | 116.7° | 118.1° |
C5 | C4 | N3 | 119.5° | 119.1° |
C5 | C6 | N1 | 117.8° | 118.5° |
C5 | C6 | N6 | 121.0° | 120.7° |
C4 | N3 | C2 | 122.3° | 120.7° |
N3 | C2 | N1 | 122.5° | 122.4° |
N3 | C2 | H2 | 118.7° | 118.8° |
N1 | C2 | H2 | 118.8° | 118.8° |
C2 | N1 | C6 | 121.2° | 121.2° |
N1 | C6 | N6 | 121.3° | 120.8° |
C6 | N6 | HN61 | 126.0° | 120.0° |
C6 | N6 | HN62 | 107.9° | 120.0° |
HN61 | N6 | HN62 | 126.0° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O53 | C52 | C51 | H521 | 119.8° | 120.0° |
O53 | C52 | C51 | H522 | 120.0° | 120.0° |
O53 | C52 | H521 | H522 | 119.9° | 120.0° |
O53 | C52 | C51 | N5' | 39.4° | 65.0° |
O53 | C52 | C51 | H511 | 159.2° | 55.0° |
O53 | C52 | C51 | H512 | 80.6° | 175.0° |
HO53 | O53 | C52 | C51 | 40.1° | 180.0° |
HO53 | O53 | C52 | H521 | 79.8° | 60.0° |
HO53 | O53 | C52 | H522 | 160.0° | 60.0° |
C51 | C52 | H521 | H522 | 119.9° | 120.0° |
C52 | C51 | N5' | H511 | 119.8° | 120.0° |
C52 | C51 | N5' | H512 | 120.0° | 120.0° |
C52 | C51 | H511 | H512 | 119.9° | 120.0° |
C52 | C51 | N5' | C5' | 109.4° | 180.0° |
C52 | C51 | N5' | HN5' | 70.6° | 0.1° |
H521 | C52 | C51 | N5' | 80.4° | 175.0° |
H521 | C52 | C51 | H511 | 39.4° | 64.9° |
H521 | C52 | C51 | H512 | 159.6° | 55.0° |
H522 | C52 | C51 | N5' | 159.4° | 55.0° |
H522 | C52 | C51 | H511 | 80.8° | 175.0° |
H522 | C52 | C51 | H512 | 39.4° | 65.0° |
N5' | C51 | H511 | H512 | 119.9° | 120.0° |
C51 | N5' | C5' | HN5' | 180.0° | 179.9° |
C51 | N5' | C5' | O5' | 5.1° | 0.1° |
C51 | N5' | C5' | C4' | 175.1° | 180.0° |
H511 | C51 | N5' | C5' | 10.4° | 59.9° |
H511 | C51 | N5' | HN5' | 169.6° | 120.0° |
H512 | C51 | N5' | C5' | 130.6° | 60.1° |
H512 | C51 | N5' | HN5' | 49.4° | 120.0° |
N5' | C5' | O5' | C4' | 179.8° | 179.9° |
N5' | C5' | C4' | O4' | 105.4° | 176.4° |
N5' | C5' | C4' | C3' | 137.8° | 68.2° |
N5' | C5' | C4' | H4' | 16.3° | 54.2° |
HN5' | N5' | C5' | O5' | 174.9° | 180.0° |
HN5' | N5' | C5' | C4' | 4.9° | 0.1° |
O5' | C5' | C4' | O4' | 74.4° | 3.5° |
O5' | C5' | C4' | C3' | 42.4° | 111.9° |
O5' | C5' | C4' | H4' | 163.9° | 125.8° |
C5' | C4' | O4' | C3' | 118.5° | 118.9° |
C5' | C4' | O4' | H4' | 120.1° | 122.3° |
C5' | C4' | C3' | H4' | 120.0° | 122.3° |
C5' | C4' | O4' | C1' | 133.4° | 159.5° |
C5' | C4' | C3' | O3' | 96.3° | 98.4° |
C5' | C4' | C3' | C2' | 147.6° | 143.0° |
C5' | C4' | C3' | H3' | 24.1° | 24.2° |
O4' | C4' | C3' | H4' | 121.6° | 118.8° |
O4' | C4' | C3' | O3' | 145.3° | 142.7° |
O4' | C4' | C3' | C2' | 29.2° | 24.1° |
O4' | C4' | C3' | H3' | 94.3° | 94.6° |
C4' | O4' | C1' | C2' | 5.8° | 40.5° |
C4' | O4' | C1' | N9 | 114.7° | 159.3° |
C4' | O4' | C1' | H1' | 126.3° | 78.4° |
C3' | C4' | O4' | C1' | 14.9° | 40.6° |
C4' | C3' | O3' | C2' | 111.6° | 114.6° |
C4' | C3' | O3' | H3' | 124.2° | 122.6° |
C4' | C3' | C2' | H3' | 123.6° | 118.7° |
C4' | C3' | O3' | HO3' | 162.1° | 61.5° |
C4' | C3' | C2' | O2' | 85.1° | 118.8° |
C4' | C3' | C2' | C1' | 31.5° | 0.2° |
C4' | C3' | C2' | H2' | 154.8° | 118.7° |
H4' | C4' | O4' | C1' | 106.6° | 78.3° |
H4' | C4' | C3' | O3' | 23.7° | 23.9° |
H4' | C4' | C3' | C2' | 92.3° | 94.7° |
H4' | C4' | C3' | H3' | 144.2° | 146.5° |
O4' | C1' | C2' | C3' | 23.9° | 23.8° |
O4' | C1' | C2' | O2' | 92.9° | 142.6° |
O4' | C1' | C2' | N9 | 120.0° | 118.9° |
O4' | C1' | C2' | H1' | 120.9° | 118.9° |
O4' | C1' | C2' | H2' | 147.1° | 94.6° |
O4' | C1' | N9 | H1' | 120.9° | 122.3° |
O4' | C1' | N9 | C8 | 22.9° | 22.0° |
O4' | C1' | N9 | C4 | 155.8° | 158.0° |
O3' | C3' | C2' | H3' | 120.5° | 122.7° |
O3' | C3' | C2' | O2' | 30.8° | 0.2° |
O3' | C3' | C2' | C1' | 147.4° | 118.8° |
O3' | C3' | C2' | H2' | 89.3° | 122.7° |
C2' | C3' | O3' | HO3' | 50.4° | 176.1° |
C3' | C2' | O2' | C1' | 112.4° | 114.7° |
C3' | C2' | O2' | H2' | 123.8° | 122.5° |
C3' | C2' | C1' | H2' | 123.2° | 118.5° |
C3' | C2' | O2' | HO2' | 167.4° | 61.5° |
C3' | C2' | C1' | N9 | 96.1° | 142.7° |
C3' | C2' | C1' | H1' | 144.8° | 95.0° |
H3' | C3' | O3' | HO3' | 73.7° | 61.2° |
H3' | C3' | C2' | O2' | 151.3° | 122.5° |
H3' | C3' | C2' | C1' | 92.1° | 118.5° |
H3' | C3' | C2' | H2' | 31.2° | 0.1° |
O2' | C2' | C1' | H2' | 120.0° | 122.8° |
O2' | C2' | C1' | N9 | 147.1° | 98.6° |
O2' | C2' | C1' | H1' | 28.0° | 23.7° |
C1' | C2' | O2' | HO2' | 80.2° | 176.2° |
C2' | C1' | N9 | H1' | 120.5° | 122.3° |
C2' | C1' | N9 | C8 | 95.7° | 93.5° |
C2' | C1' | N9 | C4 | 85.6° | 86.6° |
H2' | C2' | O2' | HO2' | 43.6° | 61.1° |
H2' | C2' | C1' | N9 | 27.1° | 24.2° |
H2' | C2' | C1' | H1' | 92.0° | 146.5° |
C1' | N9 | C8 | C4 | 178.9° | 180.0° |
C1' | N9 | C8 | N7 | 178.8° | 180.0° |
C1' | N9 | C8 | H8 | 1.2° | 0.0° |
C1' | N9 | C4 | C5 | 178.8° | 179.7° |
C1' | N9 | C4 | N3 | 0.2° | 0.0° |
H1' | C1' | N9 | C8 | 143.8° | 144.3° |
H1' | C1' | N9 | C4 | 34.8° | 35.7° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.0° | 0.3° |
C8 | N9 | C4 | C5 | 0.1° | 0.3° |
C8 | N9 | C4 | N3 | 179.1° | 180.0° |
C4 | N9 | C8 | N7 | 0.0° | 0.0° |
C4 | N9 | C8 | H8 | 180.0° | 180.0° |
N9 | C4 | C5 | N7 | 0.1° | 0.5° |
N9 | C4 | C5 | N3 | 179.1° | 179.8° |
N9 | C4 | C5 | C6 | 179.2° | 179.6° |
N9 | C4 | N3 | C2 | 178.6° | 180.0° |
C8 | N7 | C5 | C4 | 0.1° | 0.5° |
C8 | N7 | C5 | C6 | 179.0° | 179.5° |
H8 | C8 | N7 | C5 | 180.0° | 179.7° |
N7 | C5 | C4 | C6 | 179.3° | 179.2° |
N7 | C5 | C4 | N3 | 179.3° | 179.8° |
N7 | C5 | C6 | N1 | 178.7° | 179.5° |
N7 | C5 | C6 | N6 | 2.4° | 0.8° |
C5 | C4 | N3 | C2 | 0.2° | 0.3° |
C4 | C5 | C6 | N1 | 0.3° | 0.6° |
C4 | C5 | C6 | N6 | 178.6° | 179.7° |
C6 | C5 | C4 | N3 | 0.0° | 0.6° |
C5 | C6 | N1 | C2 | 0.3° | 0.3° |
C5 | C6 | N1 | N6 | 178.9° | 179.7° |
C5 | C6 | N6 | HN61 | 179.4° | 179.7° |
C5 | C6 | N6 | HN62 | 0.6° | 0.5° |
C4 | N3 | C2 | N1 | 0.2° | 0.0° |
C4 | N3 | C2 | H2 | 179.7° | 180.0° |
N3 | C2 | N1 | H2 | 180.0° | 179.9° |
N3 | C2 | N1 | C6 | 0.0° | 0.0° |
C2 | N1 | C6 | N6 | 178.6° | 180.0° |
H2 | C2 | N1 | C6 | 180.0° | 180.0° |
N1 | C6 | N6 | HN61 | 0.6° | 0.0° |
N1 | C6 | N6 | HN62 | 179.4° | 179.7° |
C6 | N6 | HN61 | HN62 | 180.0° | 179.8° |