N5M
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4 | N5 | doub | 1.22Å | 1.22Å | |
| N5 | O3 | sing | 1.22Å | 1.22Å | |
| N5 | C5 | sing | 1.48Å | 1.45Å | |
| C5 | C4 | sing | 1.41Å | 1.39Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| C4 | N4 | sing | 1.38Å | 1.36Å | |
| C4 | N3 | doub | 1.33Å | 1.35Å | |
| N3 | C2 | sing | 1.33Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| C2 | N1 | sing | 1.34Å | 1.36Å | |
| C6 | N1 | sing | 1.36Å | 1.34Å | |
| N1 | C1' | sing | 1.46Å | 1.47Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| C1' | C2' | sing | 1.55Å | 1.52Å | |
| O4' | C4' | sing | 1.44Å | 1.43Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| O5' | P | sing | 1.61Å | 1.62Å | |
| P | OP2 | doub | 1.48Å | 1.51Å | |
| P | OP1 | sing | 1.61Å | 1.51Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| N4 | HN4 | sing | 0.97Å | 1.00Å | |
| N4 | HN4A | sing | 0.97Å | 1.00Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O4 | N5 | O3 | 119.2° | 119.9° |
| O4 | N5 | C5 | 119.3° | 120.1° |
| O3 | N5 | C5 | 121.5° | 120.0° |
| N5 | C5 | C4 | 123.2° | 120.5° |
| N5 | C5 | C6 | 118.4° | 120.5° |
| C4 | C5 | C6 | 118.4° | 119.0° |
| C5 | C4 | N4 | 121.8° | 120.2° |
| C5 | C4 | N3 | 119.1° | 119.6° |
| C5 | C6 | N1 | 121.0° | 119.3° |
| C5 | C6 | H6 | 119.5° | 120.4° |
| N4 | C4 | N3 | 119.0° | 120.2° |
| C4 | N4 | HN4 | 109.8° | 120.0° |
| C4 | N4 | HN4A | 125.1° | 120.0° |
| C4 | N3 | C2 | 121.2° | 120.7° |
| N3 | C2 | O2 | 118.3° | 119.4° |
| N3 | C2 | N1 | 120.6° | 121.1° |
| O2 | C2 | N1 | 121.2° | 119.5° |
| C2 | N1 | C6 | 119.8° | 120.4° |
| C2 | N1 | C1' | 121.6° | 119.8° |
| C6 | N1 | C1' | 118.6° | 119.8° |
| N1 | C6 | H6 | 119.5° | 120.4° |
| N1 | C1' | O4' | 111.4° | 110.4° |
| N1 | C1' | C2' | 109.9° | 110.4° |
| N1 | C1' | H1' | 107.1° | 110.4° |
| O4' | C1' | C2' | 106.9° | 104.8° |
| C1' | O4' | C4' | 110.0° | 105.3° |
| O4' | C1' | H1' | 110.0° | 110.3° |
| C1' | C2' | O2' | 108.8° | 110.6° |
| C1' | C2' | C3' | 105.4° | 104.1° |
| C2' | C1' | H1' | 111.6° | 110.4° |
| C1' | C2' | H2' | 113.2° | 110.5° |
| O4' | C4' | C3' | 105.8° | 104.8° |
| O4' | C4' | C5' | 112.7° | 110.4° |
| O4' | C4' | H4' | 111.1° | 110.3° |
| O2' | C2' | C3' | 111.2° | 110.6° |
| O2' | C2' | H2' | 107.5° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C2' | C3' | O3' | 111.7° | 110.5° |
| C2' | C3' | C4' | 103.8° | 104.1° |
| C3' | C2' | H2' | 110.9° | 110.6° |
| C2' | C3' | H3' | 112.2° | 110.5° |
| O3' | C3' | C4' | 110.9° | 110.5° |
| O3' | C3' | H3' | 105.3° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C4' | C5' | 112.9° | 110.4° |
| C4' | C3' | H3' | 113.0° | 110.7° |
| C3' | C4' | H4' | 110.9° | 110.4° |
| C4' | C5' | O5' | 112.2° | 109.4° |
| C5' | C4' | H4' | 103.6° | 110.4° |
| C4' | C5' | H5' | 108.6° | 109.5° |
| C4' | C5' | H5'A | 108.0° | 109.5° |
| C5' | O5' | P | 115.9° | 123.0° |
| O5' | C5' | H5' | 108.6° | 109.5° |
| O5' | C5' | H5'A | 107.9° | 109.5° |
| O5' | P | OP2 | 85.2° | 109.5° |
| O5' | P | OP1 | 115.9° | 109.5° |
| O5' | P | OP3 | 105.7° | 109.4° |
| OP2 | P | OP1 | 129.4° | 109.5° |
| OP2 | P | OP3 | 110.0° | 109.5° |
| OP1 | P | OP3 | 107.4° | 109.5° |
| P | OP1 | HOP1 | 109.5° | 114.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| HN4 | N4 | HN4A | 125.1° | 120.0° |
| H5' | C5' | H5'A | 111.7° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4 | N5 | O3 | C5 | 179.7° | 179.7° |
| O4 | N5 | C5 | C4 | 159.3° | 174.6° |
| O4 | N5 | C5 | C6 | 20.6° | 5.7° |
| O3 | N5 | C5 | C4 | 21.0° | 5.7° |
| O3 | N5 | C5 | C6 | 159.2° | 174.0° |
| N5 | C5 | C4 | C6 | 179.8° | 179.7° |
| N5 | C5 | C4 | N4 | 0.1° | 0.0° |
| N5 | C5 | C4 | N3 | 179.9° | 180.0° |
| N5 | C5 | C6 | N1 | 179.8° | 179.8° |
| N5 | C5 | C6 | H6 | 0.2° | 0.1° |
| C5 | C4 | N4 | N3 | 180.0° | 179.9° |
| C5 | C4 | N3 | C2 | 0.1° | 0.1° |
| C4 | C5 | C6 | N1 | 0.0° | 0.5° |
| C5 | C4 | N4 | HN4 | 180.0° | 5.5° |
| C5 | C4 | N4 | HN4A | 0.0° | 174.6° |
| C4 | C5 | C6 | H6 | 180.0° | 179.7° |
| C6 | C5 | C4 | N4 | 179.9° | 179.7° |
| C6 | C5 | C4 | N3 | 0.1° | 0.2° |
| C5 | C6 | N1 | C2 | 0.1° | 0.5° |
| C5 | C6 | N1 | H6 | 180.0° | 179.8° |
| C5 | C6 | N1 | C1' | 179.8° | 179.8° |
| N4 | C4 | N3 | C2 | 179.9° | 180.0° |
| C4 | N4 | HN4 | HN4A | 180.0° | 179.9° |
| C4 | N3 | C2 | O2 | 179.9° | 180.0° |
| C4 | N3 | C2 | N1 | 0.1° | 0.1° |
| N3 | C4 | N4 | HN4 | 0.0° | 174.5° |
| N3 | C4 | N4 | HN4A | 180.0° | 5.5° |
| N3 | C2 | O2 | N1 | 180.0° | 179.9° |
| N3 | C2 | N1 | C6 | 0.0° | 0.2° |
| N3 | C2 | N1 | C1' | 179.8° | 179.9° |
| O2 | C2 | N1 | C6 | 180.0° | 179.8° |
| O2 | C2 | N1 | C1' | 0.2° | 0.0° |
| C2 | N1 | C6 | C1' | 179.8° | 179.8° |
| C2 | N1 | C1' | O4' | 159.7° | 53.6° |
| C2 | N1 | C1' | C2' | 82.0° | 61.8° |
| C2 | N1 | C6 | H6 | 179.9° | 179.7° |
| C2 | N1 | C1' | H1' | 39.4° | 175.8° |
| C6 | N1 | C1' | O4' | 20.5° | 126.2° |
| C6 | N1 | C1' | C2' | 97.8° | 118.4° |
| C6 | N1 | C1' | H1' | 140.9° | 4.0° |
| N1 | C1' | O4' | C2' | 120.0° | 118.9° |
| N1 | C1' | O4' | H1' | 118.6° | 122.3° |
| N1 | C1' | C2' | H1' | 118.6° | 122.3° |
| N1 | C1' | O4' | C4' | 131.3° | 159.3° |
| N1 | C1' | C2' | O2' | 127.1° | 98.5° |
| N1 | C1' | C2' | C3' | 113.6° | 142.8° |
| C1' | N1 | C6 | H6 | 0.2° | 0.1° |
| N1 | C1' | C2' | H2' | 7.6° | 24.0° |
| O4' | C1' | C2' | H1' | 120.3° | 118.8° |
| O4' | C1' | C2' | O2' | 111.9° | 142.6° |
| O4' | C1' | C2' | C3' | 7.4° | 23.9° |
| C1' | O4' | C4' | C3' | 25.5° | 40.5° |
| C1' | O4' | C4' | C5' | 149.4° | 159.3° |
| O4' | C1' | C2' | H2' | 128.7° | 94.8° |
| C1' | O4' | C4' | H4' | 94.9° | 78.3° |
| C2' | C1' | O4' | C4' | 11.3° | 40.4° |
| C1' | C2' | O2' | C3' | 115.6° | 114.7° |
| C1' | C2' | O2' | H2' | 122.9° | 122.6° |
| C1' | C2' | C3' | H2' | 122.8° | 118.6° |
| C1' | C2' | C3' | O3' | 141.4° | 118.7° |
| C1' | C2' | C3' | C4' | 21.9° | 0.0° |
| C1' | C2' | O2' | HO2' | 159.8° | 180.0° |
| C1' | C2' | C3' | H3' | 100.5° | 118.8° |
| O4' | C4' | C3' | C2' | 28.9° | 24.0° |
| O4' | C4' | C3' | O3' | 149.1° | 142.6° |
| O4' | C4' | C3' | C5' | 123.8° | 118.9° |
| O4' | C4' | C3' | H4' | 120.5° | 118.8° |
| O4' | C4' | C5' | H4' | 120.2° | 122.3° |
| O4' | C4' | C5' | O5' | 48.5° | 66.4° |
| C4' | O4' | C1' | H1' | 110.0° | 78.4° |
| O4' | C4' | C3' | H3' | 92.9° | 94.7° |
| O4' | C4' | C5' | H5' | 71.5° | 173.6° |
| O4' | C4' | C5' | H5'A | 167.3° | 53.5° |
| O2' | C2' | C3' | H2' | 119.5° | 122.7° |
| O2' | C2' | C3' | O3' | 23.7° | 0.0° |
| O2' | C2' | C3' | C4' | 95.8° | 118.7° |
| O2' | C2' | C1' | H1' | 8.5° | 23.8° |
| O2' | C2' | C3' | H3' | 141.8° | 122.5° |
| C2' | C3' | O3' | C4' | 115.3° | 114.6° |
| C2' | C3' | O3' | H3' | 122.1° | 122.5° |
| C2' | C3' | C4' | H3' | 121.9° | 118.7° |
| C2' | C3' | C4' | C5' | 152.7° | 142.9° |
| C3' | C2' | C1' | H1' | 127.7° | 94.9° |
| C3' | C2' | O2' | HO2' | 44.2° | 65.3° |
| C2' | C3' | O3' | HO3' | 147.4° | 61.5° |
| C2' | C3' | C4' | H4' | 91.6° | 94.8° |
| O3' | C3' | C4' | H3' | 118.0° | 122.7° |
| O3' | C3' | C4' | C5' | 87.2° | 98.5° |
| O3' | C3' | C2' | H2' | 95.8° | 122.7° |
| O3' | C3' | C4' | H4' | 28.5° | 23.8° |
| C3' | C4' | C5' | H4' | 120.0° | 122.3° |
| C3' | C4' | C5' | O5' | 71.3° | 178.2° |
| C4' | C3' | C2' | H2' | 144.6° | 118.7° |
| C4' | C3' | O3' | HO3' | 97.3° | 176.1° |
| C3' | C4' | C5' | H5' | 168.7° | 58.2° |
| C3' | C4' | C5' | H5'A | 47.5° | 61.9° |
| C4' | C5' | O5' | H5' | 120.0° | 120.1° |
| C4' | C5' | O5' | H5'A | 118.8° | 120.0° |
| C4' | C5' | O5' | P | 178.6° | 180.0° |
| C5' | C4' | C3' | H3' | 30.8° | 24.1° |
| C4' | C5' | H5' | H5'A | 118.9° | 120.0° |
| C5' | O5' | P | OP2 | 171.1° | 55.0° |
| C5' | O5' | P | OP1 | 39.3° | 175.0° |
| C5' | O5' | P | OP3 | 79.5° | 65.0° |
| O5' | C5' | C4' | H4' | 168.7° | 55.9° |
| O5' | C5' | H5' | H5'A | 118.9° | 120.0° |
| O5' | P | OP2 | OP1 | 119.8° | 120.0° |
| O5' | P | OP2 | OP3 | 105.0° | 120.0° |
| O5' | P | OP1 | OP3 | 117.8° | 119.9° |
| P | O5' | C5' | H5' | 58.6° | 60.0° |
| P | O5' | C5' | H5'A | 62.6° | 60.0° |
| O5' | P | OP1 | HOP1 | 166.3° | 180.0° |
| O5' | P | OP3 | HOP3 | 152.2° | 60.0° |
| OP2 | P | OP1 | OP3 | 136.1° | 120.0° |
| OP2 | P | OP1 | HOP1 | 60.3° | 60.0° |
| OP2 | P | OP3 | HOP3 | 117.3° | 180.0° |
| OP1 | P | OP3 | HOP3 | 28.0° | 59.9° |
| OP3 | P | OP1 | HOP1 | 75.8° | 60.1° |
| H1' | C1' | C2' | H2' | 111.0° | 146.4° |
| H2' | C2' | O2' | HO2' | 77.3° | 57.5° |
| H2' | C2' | C3' | H3' | 22.2° | 0.2° |
| H3' | C3' | O3' | HO3' | 25.3° | 61.1° |
| H3' | C3' | C4' | H4' | 146.6° | 146.5° |
| H4' | C4' | C5' | H5' | 48.7° | 64.1° |
| H4' | C4' | C5' | H5'A | 72.5° | 175.8° |
