N5I

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3P	P	sing	1.62Å	1.61Å
O3P	HOP3	sing	0.98Å	0.95Å
OR2	NRO	doub	1.25Å	1.22Å
NRO	OR1	sing	1.25Å	1.22Å
NRO	CZ3	sing	1.42Å	1.46Å
CZ3	CH2	doub	1.39Å	1.40Å	Aromatic
CZ3	CE3	sing	1.40Å	1.39Å	Aromatic
CE3	CD2	doub	1.41Å	1.40Å	Aromatic
CE3	HE3	sing	1.09Å	1.08Å
CD2	CE2	sing	1.40Å	1.42Å	Aromatic
CD2	CG	sing	1.42Å	1.43Å	Aromatic
CH2	CZ2	sing	1.40Å	1.37Å	Aromatic
CH2	HH2	sing	1.09Å	1.08Å
CZ2	CE2	doub	1.40Å	1.41Å	Aromatic
CZ2	HZ2	sing	1.09Å	1.08Å
CE2	NE1	sing	1.38Å	1.37Å	Aromatic
NE1	C1'	sing	1.46Å	1.49Å
NE1	CD1	sing	1.37Å	1.37Å	Aromatic
CD1	CG	doub	1.38Å	1.36Å	Aromatic
CD1	HD1	sing	1.08Å	1.08Å
CG	HG	sing	1.08Å	1.08Å
C1'	C2'	sing	1.52Å	1.52Å
C1'	O4'	sing	1.44Å	1.43Å
C1'	H1'	sing	1.10Å	1.10Å
O4'	C4'	sing	1.44Å	1.43Å
C4'	C3'	sing	1.52Å	1.52Å
C4'	C5'	sing	1.52Å	1.53Å
C4'	H4'	sing	1.10Å	1.10Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C2'	sing	1.51Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	H3T	sing	0.97Å	0.95Å
C2'	H2'1	sing	1.10Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
C5'	O5'	sing	1.42Å	1.42Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
O5'	P	sing	1.62Å	1.61Å
P	O1P	doub	1.50Å	1.52Å
P	O2P	sing	1.62Å	1.52Å
O2P	HOP2	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O3P	HOP3	109.5°	118.9°
O3P	P	O5'	101.3°	103.7°
O3P	P	O1P	110.2°	115.3°
O3P	P	O2P	107.3°	103.3°
OR2	NRO	OR1	119.0°	122.1°
OR2	NRO	CZ3	120.5°	118.9°
OR1	NRO	CZ3	120.5°	119.0°
NRO	CZ3	CH2	118.8°	119.7°
NRO	CZ3	CE3	118.6°	119.5°
CH2	CZ3	CE3	122.5°	120.8°
CZ3	CH2	CZ2	120.7°	121.0°
CZ3	CH2	HH2	119.7°	120.3°
CZ3	CE3	CD2	118.0°	119.2°
CZ3	CE3	HE3	121.0°	120.8°
CD2	CE3	HE3	121.0°	120.0°
CE3	CD2	CE2	118.8°	118.8°
CE3	CD2	CG	133.9°	134.1°
CE2	CD2	CG	107.3°	107.1°
CD2	CE2	CZ2	122.6°	122.7°
CD2	CE2	NE1	106.8°	107.4°
CD2	CG	CD1	106.4°	107.7°
CD2	CG	HG	126.8°	126.9°
CZ2	CH2	HH2	119.6°	118.6°
CH2	CZ2	CE2	117.3°	117.5°
CH2	CZ2	HZ2	121.3°	120.7°
CE2	CZ2	HZ2	121.3°	121.7°
CZ2	CE2	NE1	130.6°	129.9°
CE2	NE1	C1'	127.4°	125.8°
CE2	NE1	CD1	109.4°	109.6°
C1'	NE1	CD1	123.1°	124.6°
NE1	C1'	C2'	114.6°	114.3°
NE1	C1'	O4'	109.8°	110.0°
NE1	C1'	H1'	104.6°	105.9°
NE1	CD1	CG	110.1°	108.2°
NE1	CD1	HD1	124.9°	120.8°
CG	CD1	HD1	124.9°	131.0°
CD1	CG	HG	126.8°	125.4°
C2'	C1'	O4'	105.7°	106.7°
C2'	C1'	H1'	108.7°	111.7°
C1'	C2'	C3'	101.7°	101.6°
C1'	C2'	H2'1	112.1°	110.5°
C1'	C2'	H2'2	113.8°	111.7°
O4'	C1'	H1'	113.6°	108.1°
C1'	O4'	C4'	110.4°	108.7°
O4'	C4'	C3'	106.0°	106.8°
O4'	C4'	C5'	109.5°	108.0°
O4'	C4'	H4'	113.5°	107.7°
C3'	C4'	C5'	114.3°	112.7°
C3'	C4'	H4'	108.6°	112.0°
C4'	C3'	O3'	110.2°	109.6°
C4'	C3'	C2'	102.2°	103.2°
C4'	C3'	H3'	114.4°	114.0°
C5'	C4'	H4'	105.1°	109.4°
C4'	C5'	O5'	110.4°	108.7°
C4'	C5'	H5'1	109.2°	110.1°
C4'	C5'	H5'2	108.9°	110.1°
O3'	C3'	C2'	111.5°	108.4°
O3'	C3'	H3'	105.6°	107.8°
C3'	O3'	H3T	109.5°	106.6°
C2'	C3'	H3'	113.2°	113.7°
C3'	C2'	H2'1	112.2°	110.0°
C3'	C2'	H2'2	113.8°	114.2°
H2'1	C2'	H2'2	103.7°	108.7°
O5'	C5'	H5'1	109.1°	109.2°
O5'	C5'	H5'2	109.0°	109.2°
C5'	O5'	P	122.0°	118.5°
H5'1	C5'	H5'2	110.2°	109.6°
O5'	P	O1P	109.3°	115.0°
O5'	P	O2P	108.6°	102.9°
O1P	P	O2P	118.7°	115.0°
P	O2P	HOP2	109.5°	118.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3P	P	O5'	C5'	139.7°	53.2°
O3P	P	O5'	O1P	116.3°	126.8°
O3P	P	O5'	O2P	112.8°	107.4°
O3P	P	O1P	O2P	124.2°	120.1°
O3P	P	O2P	HOP2	169.7°	78.5°
HOP3	O3P	P	O5'	149.9°	175.4°
HOP3	O3P	P	O1P	94.5°	48.8°
HOP3	O3P	P	O2P	36.1°	77.5°
OR2	NRO	OR1	CZ3	179.9°	180.0°
OR2	NRO	CZ3	CH2	0.0°	0.0°
OR2	NRO	CZ3	CE3	179.8°	180.0°
OR1	NRO	CZ3	CH2	180.0°	180.0°
OR1	NRO	CZ3	CE3	0.1°	0.0°
NRO	CZ3	CH2	CE3	179.9°	180.0°
NRO	CZ3	CE3	CD2	179.8°	180.0°
NRO	CZ3	CE3	HE3	0.2°	0.1°
NRO	CZ3	CH2	CZ2	179.8°	180.0°
NRO	CZ3	CH2	HH2	0.2°	0.0°
CH2	CZ3	CE3	CD2	0.3°	0.1°
CH2	CZ3	CE3	HE3	179.7°	179.9°
CZ3	CH2	CZ2	HH2	180.0°	179.9°
CZ3	CH2	CZ2	CE2	0.2°	0.0°
CZ3	CH2	CZ2	HZ2	179.8°	180.0°
CZ3	CE3	CD2	HE3	180.0°	179.9°
CZ3	CE3	CD2	CE2	0.2°	0.0°
CZ3	CE3	CD2	CG	179.5°	180.0°
CE3	CZ3	CH2	CZ2	0.3°	0.1°
CE3	CZ3	CH2	HH2	179.7°	180.0°
CE3	CD2	CE2	CG	179.5°	180.0°
CE3	CD2	CE2	CZ2	0.1°	0.0°
CE3	CD2	CE2	NE1	179.8°	180.0°
CE3	CD2	CG	CD1	180.0°	180.0°
CE3	CD2	CG	HG	0.0°	0.0°
HE3	CE3	CD2	CE2	179.8°	179.9°
HE3	CE3	CD2	CG	0.5°	0.1°
CD2	CE2	CZ2	CH2	0.1°	0.0°
CD2	CE2	CZ2	NE1	179.9°	180.0°
CD2	CE2	CZ2	HZ2	179.9°	179.9°
CD2	CE2	NE1	C1'	179.8°	180.0°
CD2	CE2	NE1	CD1	0.1°	0.0°
CE2	CD2	CG	CD1	0.6°	0.0°
CE2	CD2	CG	HG	179.3°	180.0°
CG	CD2	CE2	CZ2	179.6°	180.0°
CG	CD2	CE2	NE1	0.3°	0.0°
CD2	CG	CD1	NE1	0.7°	0.0°
CD2	CG	CD1	HG	180.0°	180.0°
CD2	CG	CD1	HD1	179.3°	180.0°
CH2	CZ2	CE2	HZ2	180.0°	180.0°
CH2	CZ2	CE2	NE1	179.8°	180.0°
HH2	CH2	CZ2	CE2	179.8°	180.0°
HH2	CH2	CZ2	HZ2	0.2°	0.1°
CZ2	CE2	NE1	C1'	0.1°	0.0°
CZ2	CE2	NE1	CD1	180.0°	180.0°
HZ2	CZ2	CE2	NE1	0.2°	0.0°
CE2	NE1	C1'	CD1	179.9°	180.0°
CE2	NE1	CD1	CG	0.5°	0.0°
CE2	NE1	CD1	HD1	179.5°	180.0°
CE2	NE1	C1'	C2'	70.7°	93.4°
CE2	NE1	C1'	O4'	170.5°	146.5°
CE2	NE1	C1'	H1'	48.2°	30.0°
C1'	NE1	CD1	CG	179.4°	180.0°
C1'	NE1	CD1	HD1	0.6°	0.0°
NE1	C1'	C2'	O4'	121.0°	121.8°
NE1	C1'	C2'	H1'	116.6°	120.3°
NE1	C1'	O4'	H1'	116.7°	115.2°
NE1	C1'	O4'	C4'	109.8°	141.8°
NE1	C1'	C2'	C3'	89.0°	154.5°
NE1	C1'	C2'	H2'1	151.0°	37.8°
NE1	C1'	C2'	H2'2	33.8°	83.3°
NE1	CD1	CG	HD1	180.0°	180.0°
NE1	CD1	CG	HG	179.3°	180.0°
CD1	NE1	C1'	C2'	109.4°	86.6°
CD1	NE1	C1'	O4'	9.4°	33.5°
CD1	NE1	C1'	H1'	131.6°	150.0°
HD1	CD1	CG	HG	0.7°	0.0°
C2'	C1'	O4'	H1'	119.1°	120.3°
C2'	C1'	O4'	C4'	14.3°	17.3°
C1'	C2'	C3'	C4'	36.7°	34.8°
C1'	C2'	C3'	O3'	154.4°	81.3°
C1'	C2'	C3'	H2'1	120.0°	117.0°
C1'	C2'	C3'	H2'2	122.8°	120.4°
C1'	C2'	C3'	H3'	86.8°	158.8°
C1'	C2'	H2'1	H2'2	123.1°	122.9°
C1'	O4'	C4'	C3'	9.7°	5.5°
C1'	O4'	C4'	C5'	133.5°	116.0°
C1'	O4'	C4'	H4'	109.5°	126.0°
O4'	C1'	C2'	C3'	32.0°	32.7°
O4'	C1'	C2'	H2'1	88.0°	84.0°
O4'	C1'	C2'	H2'2	154.8°	154.9°
H1'	C1'	O4'	C4'	133.4°	103.1°
H1'	C1'	C2'	C3'	154.4°	85.2°
H1'	C1'	C2'	H2'1	34.4°	158.1°
H1'	C1'	C2'	H2'2	82.8°	37.0°
O4'	C4'	C3'	C5'	120.7°	118.5°
O4'	C4'	C3'	H4'	122.3°	117.7°
O4'	C4'	C5'	H4'	122.3°	117.0°
O4'	C4'	C3'	O3'	148.0°	89.4°
O4'	C4'	C3'	C2'	29.4°	25.9°
O4'	C4'	C3'	H3'	93.2°	149.7°
O4'	C4'	C5'	O5'	46.1°	61.8°
O4'	C4'	C5'	H5'1	166.1°	57.8°
O4'	C4'	C5'	H5'2	73.5°	178.7°
C3'	C4'	C5'	H4'	119.0°	125.3°
C4'	C3'	O3'	C2'	112.7°	111.9°
C4'	C3'	O3'	H3'	124.0°	124.6°
C4'	C3'	C2'	H3'	123.5°	123.9°
C4'	C3'	O3'	H3T	12.8°	46.6°
C4'	C3'	C2'	H2'1	83.3°	82.2°
C4'	C3'	C2'	H2'2	159.4°	155.2°
C3'	C4'	C5'	O5'	164.9°	179.5°
C3'	C4'	C5'	H5'1	75.1°	60.0°
C3'	C4'	C5'	H5'2	45.2°	60.9°
C5'	C4'	C3'	O3'	91.2°	152.1°
C5'	C4'	C3'	C2'	150.2°	92.6°
C5'	C4'	C3'	H3'	27.5°	31.2°
C4'	C5'	O5'	H5'1	120.0°	120.1°
C4'	C5'	O5'	H5'2	119.6°	120.1°
C4'	C5'	H5'1	H5'2	119.6°	121.2°
C4'	C5'	O5'	P	118.9°	180.0°
H4'	C4'	C3'	O3'	25.8°	28.3°
H4'	C4'	C3'	C2'	92.9°	143.6°
H4'	C4'	C3'	H3'	144.5°	92.6°
H4'	C4'	C5'	O5'	76.1°	55.2°
H4'	C4'	C5'	H5'1	43.8°	174.7°
H4'	C4'	C5'	H5'2	164.2°	64.3°
O3'	C3'	C2'	H3'	118.8°	119.9°
O3'	C3'	C2'	H2'1	34.4°	161.6°
O3'	C3'	C2'	H2'2	82.9°	39.1°
C2'	C3'	O3'	H3T	99.9°	65.3°
C3'	C2'	H2'1	H2'2	123.2°	125.7°
H3'	C3'	O3'	H3T	136.8°	171.2°
H3'	C3'	C2'	H2'1	153.2°	41.7°
H3'	C3'	C2'	H2'2	36.0°	80.8°
O5'	C5'	H5'1	H5'2	119.6°	119.6°
C5'	O5'	P	O1P	23.4°	180.0°
C5'	O5'	P	O2P	107.5°	54.2°
H5'1	C5'	O5'	P	121.1°	59.9°
H5'2	C5'	O5'	P	0.7°	59.9°
O5'	P	O1P	O2P	125.2°	119.3°
O5'	P	O2P	HOP2	60.9°	173.9°
O1P	P	O2P	HOP2	64.7°	48.0°

Definition date:	2007-03-21
Last modified:	2021-03-01
Release status:	REL
Processing site:	PDBJ