N5C
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4 | N5 | doub | 1.22Å | 1.22Å | |
| N5 | O3 | sing | 1.22Å | 1.22Å | |
| N5 | C5 | sing | 1.48Å | 1.45Å | |
| C5 | C4 | sing | 1.41Å | 1.43Å | |
| C5 | C6 | doub | 1.35Å | 1.35Å | |
| C4 | N4 | sing | 1.38Å | 1.33Å | |
| C4 | N3 | doub | 1.33Å | 1.34Å | |
| N3 | C2 | sing | 1.33Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| C2 | N1 | sing | 1.35Å | 1.41Å | |
| C6 | N1 | sing | 1.36Å | 1.38Å | |
| N1 | C1' | sing | 1.46Å | 1.48Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C4' | C5' | sing | 1.53Å | 1.50Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| O5' | PA | sing | 1.61Å | 1.59Å | |
| PA | O1A | sing | 1.61Å | 1.52Å | |
| PA | O2A | doub | 1.48Å | 1.51Å | |
| PA | O3A | sing | 1.61Å | 1.62Å | |
| O3A | PB | sing | 1.61Å | 1.62Å | |
| PB | O1B | doub | 1.48Å | 1.51Å | |
| PB | O2B | sing | 1.61Å | 1.51Å | |
| PB | O3B | sing | 1.61Å | 1.61Å | |
| O3B | PG | sing | 1.61Å | 1.61Å | |
| PG | O1G | doub | 1.48Å | 1.51Å | |
| PG | O2G | sing | 1.61Å | 1.52Å | |
| PG | O3G | sing | 1.61Å | 1.52Å | |
| N4 | HN4 | sing | 0.97Å | 1.00Å | |
| N4 | HN4A | sing | 0.97Å | 1.00Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| O1A | HO1A | sing | 0.97Å | 0.95Å | |
| O2B | HO2B | sing | 0.97Å | 0.95Å | |
| O2G | HO2G | sing | 0.97Å | 0.95Å | |
| O3G | HO3G | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O4 | N5 | O3 | 118.4° | 120.0° |
| O4 | N5 | C5 | 120.5° | 120.0° |
| O3 | N5 | C5 | 121.1° | 120.0° |
| N5 | C5 | C4 | 121.6° | 120.5° |
| N5 | C5 | C6 | 121.5° | 120.5° |
| C4 | C5 | C6 | 116.9° | 118.9° |
| C5 | C4 | N4 | 121.5° | 120.1° |
| C5 | C4 | N3 | 121.5° | 119.6° |
| C5 | C6 | N1 | 122.2° | 119.3° |
| C5 | C6 | H6 | 118.9° | 120.3° |
| N4 | C4 | N3 | 117.0° | 120.2° |
| C4 | N4 | HN4 | 109.5° | 120.0° |
| C4 | N4 | HN4A | 125.3° | 120.0° |
| C4 | N3 | C2 | 121.0° | 120.7° |
| N3 | C2 | O2 | 120.7° | 119.4° |
| N3 | C2 | N1 | 119.2° | 121.1° |
| O2 | C2 | N1 | 120.1° | 119.5° |
| C2 | N1 | C6 | 119.2° | 120.3° |
| C2 | N1 | C1' | 118.7° | 119.8° |
| C6 | N1 | C1' | 122.1° | 119.9° |
| N1 | C6 | H6 | 118.9° | 120.4° |
| N1 | C1' | O4' | 110.6° | 110.4° |
| N1 | C1' | C2' | 113.0° | 110.4° |
| N1 | C1' | H1' | 105.6° | 110.3° |
| O4' | C1' | C2' | 107.2° | 104.8° |
| C1' | O4' | C4' | 110.4° | 105.3° |
| O4' | C1' | H1' | 111.6° | 110.3° |
| C1' | C2' | O2' | 109.0° | 110.5° |
| C1' | C2' | C3' | 101.3° | 104.1° |
| C2' | C1' | H1' | 109.1° | 110.5° |
| C1' | C2' | H2' | 116.1° | 110.5° |
| O4' | C4' | C3' | 104.2° | 104.8° |
| O4' | C4' | C5' | 108.9° | 110.4° |
| O4' | C4' | H4' | 115.6° | 110.4° |
| O2' | C2' | C3' | 112.6° | 110.5° |
| O2' | C2' | H2' | 105.4° | 110.4° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C2' | C3' | O3' | 115.9° | 110.5° |
| C2' | C3' | C4' | 102.5° | 104.0° |
| C3' | C2' | H2' | 112.7° | 110.7° |
| C2' | C3' | H3' | 111.4° | 110.5° |
| O3' | C3' | C4' | 113.3° | 110.5° |
| O3' | C3' | H3' | 100.2° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C4' | C5' | 115.8° | 110.4° |
| C4' | C3' | H3' | 114.1° | 110.7° |
| C3' | C4' | H4' | 108.7° | 110.4° |
| C4' | C5' | O5' | 111.9° | 109.5° |
| C5' | C4' | H4' | 104.0° | 110.4° |
| C4' | C5' | H5' | 108.6° | 109.5° |
| C4' | C5' | H5'A | 108.1° | 109.5° |
| C5' | O5' | PA | 122.6° | 123.0° |
| O5' | C5' | H5' | 108.7° | 109.5° |
| O5' | C5' | H5'A | 108.1° | 109.4° |
| O5' | PA | O1A | 109.7° | 109.5° |
| O5' | PA | O2A | 107.6° | 109.5° |
| O5' | PA | O3A | 100.1° | 109.5° |
| O1A | PA | O2A | 116.0° | 109.5° |
| O1A | PA | O3A | 114.3° | 109.5° |
| PA | O1A | HO1A | 109.5° | 114.0° |
| O2A | PA | O3A | 107.8° | 109.5° |
| PA | O3A | PB | 131.2° | 134.0° |
| O3A | PB | O1B | 108.6° | 109.5° |
| O3A | PB | O2B | 109.6° | 109.5° |
| O3A | PB | O3B | 105.8° | 109.5° |
| O1B | PB | O2B | 116.8° | 109.4° |
| O1B | PB | O3B | 108.1° | 109.5° |
| O2B | PB | O3B | 107.2° | 109.5° |
| PB | O2B | HO2B | 109.5° | 114.0° |
| PB | O3B | PG | 124.3° | 134.0° |
| O3B | PG | O1G | 109.3° | 109.5° |
| O3B | PG | O2G | 109.0° | 109.5° |
| O3B | PG | O3G | 110.0° | 109.5° |
| O1G | PG | O2G | 109.3° | 109.5° |
| O1G | PG | O3G | 109.7° | 109.5° |
| O2G | PG | O3G | 109.6° | 109.5° |
| PG | O2G | HO2G | 109.5° | 114.0° |
| PG | O3G | HO3G | 109.5° | 114.0° |
| HN4 | N4 | HN4A | 125.3° | 120.0° |
| H5' | C5' | H5'A | 111.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4 | N5 | O3 | C5 | 179.2° | 179.7° |
| O4 | N5 | C5 | C4 | 166.2° | 174.6° |
| O4 | N5 | C5 | C6 | 13.4° | 5.7° |
| O3 | N5 | C5 | C4 | 13.0° | 5.7° |
| O3 | N5 | C5 | C6 | 167.4° | 174.0° |
| N5 | C5 | C4 | C6 | 179.6° | 179.8° |
| N5 | C5 | C4 | N4 | 0.4° | 0.0° |
| N5 | C5 | C4 | N3 | 179.7° | 180.0° |
| N5 | C5 | C6 | N1 | 179.9° | 179.7° |
| N5 | C5 | C6 | H6 | 0.1° | 0.0° |
| C5 | C4 | N4 | N3 | 179.9° | 180.0° |
| C5 | C4 | N3 | C2 | 0.0° | 0.0° |
| C4 | C5 | C6 | N1 | 0.3° | 0.5° |
| C5 | C4 | N4 | HN4 | 180.0° | 5.4° |
| C5 | C4 | N4 | HN4A | 0.0° | 174.6° |
| C4 | C5 | C6 | H6 | 179.7° | 179.8° |
| C6 | C5 | C4 | N4 | 180.0° | 179.7° |
| C6 | C5 | C4 | N3 | 0.1° | 0.3° |
| C5 | C6 | N1 | C2 | 0.4° | 0.6° |
| C5 | C6 | N1 | H6 | 180.0° | 179.7° |
| C5 | C6 | N1 | C1' | 179.9° | 179.7° |
| N4 | C4 | N3 | C2 | 179.9° | 180.0° |
| C4 | N4 | HN4 | HN4A | 180.0° | 179.9° |
| C4 | N3 | C2 | O2 | 179.8° | 179.9° |
| C4 | N3 | C2 | N1 | 0.0° | 0.0° |
| N3 | C4 | N4 | HN4 | 0.1° | 174.5° |
| N3 | C4 | N4 | HN4A | 179.9° | 5.4° |
| N3 | C2 | O2 | N1 | 179.8° | 179.9° |
| N3 | C2 | N1 | C6 | 0.3° | 0.3° |
| N3 | C2 | N1 | C1' | 180.0° | 180.0° |
| O2 | C2 | N1 | C6 | 179.6° | 179.7° |
| O2 | C2 | N1 | C1' | 0.1° | 0.0° |
| C2 | N1 | C6 | C1' | 179.7° | 179.7° |
| C2 | N1 | C1' | O4' | 163.5° | 53.6° |
| C2 | N1 | C1' | C2' | 76.4° | 61.8° |
| C2 | N1 | C6 | H6 | 179.6° | 179.8° |
| C2 | N1 | C1' | H1' | 42.7° | 175.8° |
| C6 | N1 | C1' | O4' | 16.2° | 126.1° |
| C6 | N1 | C1' | C2' | 103.9° | 118.5° |
| C6 | N1 | C1' | H1' | 137.0° | 3.9° |
| N1 | C1' | O4' | C2' | 123.5° | 118.9° |
| N1 | C1' | O4' | H1' | 117.2° | 122.2° |
| N1 | C1' | C2' | H1' | 117.1° | 122.3° |
| N1 | C1' | O4' | C4' | 117.8° | 159.4° |
| N1 | C1' | C2' | O2' | 145.9° | 98.5° |
| N1 | C1' | C2' | C3' | 95.1° | 142.8° |
| C1' | N1 | C6 | H6 | 0.1° | 0.1° |
| N1 | C1' | C2' | H2' | 27.2° | 24.0° |
| O4' | C1' | C2' | H1' | 120.9° | 118.8° |
| O4' | C1' | C2' | O2' | 92.0° | 142.6° |
| O4' | C1' | C2' | C3' | 26.9° | 24.0° |
| C1' | O4' | C4' | C3' | 18.2° | 40.5° |
| C1' | O4' | C4' | C5' | 142.3° | 159.3° |
| O4' | C1' | C2' | H2' | 149.2° | 94.9° |
| C1' | O4' | C4' | H4' | 101.0° | 78.4° |
| C2' | C1' | O4' | C4' | 5.7° | 40.5° |
| C1' | C2' | O2' | C3' | 111.6° | 114.7° |
| C1' | C2' | O2' | H2' | 125.2° | 122.6° |
| C1' | C2' | C3' | H2' | 124.6° | 118.7° |
| C1' | C2' | C3' | O3' | 160.6° | 118.7° |
| C1' | C2' | C3' | C4' | 36.7° | 0.0° |
| C1' | C2' | O2' | HO2' | 174.8° | 180.0° |
| C1' | C2' | C3' | H3' | 85.7° | 118.8° |
| O4' | C4' | C3' | C2' | 34.4° | 24.0° |
| O4' | C4' | C3' | O3' | 160.0° | 142.6° |
| O4' | C4' | C3' | C5' | 119.6° | 118.8° |
| O4' | C4' | C3' | H4' | 123.9° | 118.9° |
| O4' | C4' | C5' | H4' | 123.8° | 122.3° |
| O4' | C4' | C5' | O5' | 62.8° | 66.4° |
| C4' | O4' | C1' | H1' | 125.0° | 78.4° |
| O4' | C4' | C3' | H3' | 86.2° | 94.7° |
| O4' | C4' | C5' | H5' | 57.2° | 173.5° |
| O4' | C4' | C5' | H5'A | 178.3° | 53.5° |
| O2' | C2' | C3' | H2' | 119.0° | 122.6° |
| O2' | C2' | C3' | O3' | 44.3° | 0.0° |
| O2' | C2' | C3' | C4' | 79.6° | 118.7° |
| O2' | C2' | C1' | H1' | 28.9° | 23.8° |
| O2' | C2' | C3' | H3' | 157.9° | 122.6° |
| C2' | C3' | O3' | C4' | 118.0° | 114.6° |
| C2' | C3' | O3' | H3' | 120.0° | 122.6° |
| C2' | C3' | C4' | H3' | 120.6° | 118.6° |
| C2' | C3' | C4' | C5' | 154.0° | 142.8° |
| C3' | C2' | C1' | H1' | 147.8° | 94.8° |
| C3' | C2' | O2' | HO2' | 73.6° | 65.4° |
| C2' | C3' | O3' | HO3' | 87.0° | 61.4° |
| C2' | C3' | C4' | H4' | 89.4° | 94.9° |
| O3' | C3' | C4' | H3' | 113.8° | 122.7° |
| O3' | C3' | C4' | C5' | 80.4° | 98.5° |
| O3' | C3' | C2' | H2' | 74.8° | 122.6° |
| O3' | C3' | C4' | H4' | 36.2° | 23.8° |
| C3' | C4' | C5' | H4' | 119.2° | 122.3° |
| C3' | C4' | C5' | O5' | 54.2° | 178.2° |
| C4' | C3' | C2' | H2' | 161.4° | 118.7° |
| C4' | C3' | O3' | HO3' | 154.9° | 176.0° |
| C3' | C4' | C5' | H5' | 174.2° | 58.1° |
| C3' | C4' | C5' | H5'A | 64.7° | 61.9° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 118.9° | 120.0° |
| C4' | C5' | O5' | PA | 153.9° | 180.0° |
| C5' | C4' | C3' | H3' | 33.4° | 24.2° |
| C4' | C5' | H5' | H5'A | 119.0° | 120.1° |
| C5' | O5' | PA | O1A | 31.0° | 65.0° |
| C5' | O5' | PA | O2A | 158.0° | 55.0° |
| C5' | O5' | PA | O3A | 89.5° | 175.0° |
| O5' | C5' | C4' | H4' | 173.4° | 55.9° |
| O5' | C5' | H5' | H5'A | 119.0° | 119.9° |
| O5' | PA | O1A | O2A | 122.2° | 120.0° |
| O5' | PA | O1A | O3A | 111.4° | 120.0° |
| O5' | PA | O2A | O3A | 107.1° | 120.0° |
| O5' | PA | O3A | PB | 75.7° | 165.0° |
| PA | O5' | C5' | H5' | 86.1° | 60.0° |
| PA | O5' | C5' | H5'A | 35.0° | 60.0° |
| O5' | PA | O1A | HO1A | 102.2° | 60.0° |
| O1A | PA | O2A | O3A | 129.6° | 120.0° |
| O1A | PA | O3A | PB | 41.3° | 75.0° |
| O2A | PA | O3A | PB | 171.9° | 45.0° |
| O2A | PA | O1A | HO1A | 135.6° | 180.0° |
| PA | O3A | PB | O1B | 114.6° | 45.0° |
| PA | O3A | PB | O2B | 14.1° | 75.0° |
| PA | O3A | PB | O3B | 129.5° | 165.0° |
| O3A | PA | O1A | HO1A | 9.2° | 59.9° |
| O3A | PB | O1B | O2B | 124.6° | 120.0° |
| O3A | PB | O1B | O3B | 114.4° | 120.0° |
| O3A | PB | O2B | O3B | 114.5° | 120.0° |
| O3A | PB | O3B | PG | 51.7° | 160.0° |
| O3A | PB | O2B | HO2B | 166.4° | 60.0° |
| O1B | PB | O2B | O3B | 121.5° | 120.0° |
| O1B | PB | O3B | PG | 167.9° | 40.0° |
| O1B | PB | O2B | HO2B | 69.6° | 180.0° |
| O2B | PB | O3B | PG | 65.3° | 80.0° |
| PB | O3B | PG | O1G | 146.3° | 40.0° |
| PB | O3B | PG | O2G | 94.3° | 80.0° |
| PB | O3B | PG | O3G | 25.8° | 160.0° |
| O3B | PB | O2B | HO2B | 51.9° | 60.0° |
| O3B | PG | O1G | O2G | 119.2° | 120.0° |
| O3B | PG | O1G | O3G | 120.6° | 120.0° |
| O3B | PG | O2G | O3G | 120.4° | 120.0° |
| O3B | PG | O2G | HO2G | 98.5° | 60.0° |
| O3B | PG | O3G | HO3G | 77.8° | 179.9° |
| O1G | PG | O2G | O3G | 120.2° | 120.0° |
| O1G | PG | O2G | HO2G | 142.1° | 180.0° |
| O1G | PG | O3G | HO3G | 42.4° | 59.9° |
| O2G | PG | O3G | HO3G | 162.4° | 60.1° |
| O3G | PG | O2G | HO2G | 21.9° | 60.0° |
| H1' | C1' | C2' | H2' | 89.9° | 146.3° |
| H2' | C2' | O2' | HO2' | 49.6° | 57.4° |
| H2' | C2' | C3' | H3' | 38.9° | 0.0° |
| H3' | C3' | O3' | HO3' | 33.0° | 61.1° |
| H3' | C3' | C4' | H4' | 150.0° | 146.5° |
| H4' | C4' | C5' | H5' | 66.6° | 64.2° |
| H4' | C4' | C5' | H5'A | 54.5° | 175.8° |
