N5A
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N53 | C52 | sing | 1.47Å | 1.47Å | |
| N53 | H531 | sing | 1.01Å | 1.00Å | |
| N53 | H532 | sing | 1.01Å | 1.00Å | |
| C52 | C51 | sing | 1.53Å | 1.53Å | |
| C52 | H521 | sing | 1.09Å | 1.10Å | |
| C52 | H522 | sing | 1.09Å | 1.10Å | |
| C51 | N5' | sing | 1.47Å | 1.47Å | |
| C51 | H511 | sing | 1.09Å | 1.10Å | |
| C51 | H512 | sing | 1.09Å | 1.10Å | |
| N5' | C5' | sing | 1.35Å | 1.33Å | |
| N5' | HN5' | sing | 0.97Å | 1.00Å | |
| C5' | O5' | doub | 1.21Å | 1.23Å | |
| C5' | C4' | sing | 1.51Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N9 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.33Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.33Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.33Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.35Å | 1.33Å | Aromatic |
| C5 | C4 | doub | 1.41Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.40Å | 1.39Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.34Å | Aromatic |
| N3 | C2 | doub | 1.32Å | 1.32Å | Aromatic |
| C2 | N1 | sing | 1.32Å | 1.32Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N1 | C6 | doub | 1.33Å | 1.34Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.33Å | |
| N6 | HN61 | sing | 0.97Å | 1.00Å | |
| N6 | HN62 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C52 | N53 | H531 | 109.4° | 106.8° |
| C52 | N53 | H532 | 109.5° | 106.7° |
| N53 | C52 | C51 | 109.2° | 109.4° |
| N53 | C52 | H521 | 109.6° | 109.5° |
| N53 | C52 | H522 | 109.6° | 109.5° |
| H531 | N53 | H532 | 109.5° | 106.7° |
| C51 | C52 | H521 | 109.6° | 109.4° |
| C51 | C52 | H522 | 109.6° | 109.4° |
| C52 | C51 | N5' | 109.0° | 109.5° |
| C52 | C51 | H511 | 109.7° | 109.5° |
| C52 | C51 | H512 | 109.6° | 109.5° |
| H521 | C52 | H522 | 109.2° | 109.5° |
| N5' | C51 | H511 | 109.7° | 109.4° |
| N5' | C51 | H512 | 109.7° | 109.5° |
| C51 | N5' | C5' | 122.0° | 120.0° |
| C51 | N5' | HN5' | 119.0° | 120.0° |
| H511 | C51 | H512 | 109.1° | 109.5° |
| C5' | N5' | HN5' | 119.0° | 120.0° |
| N5' | C5' | O5' | 123.2° | 120.1° |
| N5' | C5' | C4' | 118.3° | 120.0° |
| O5' | C5' | C4' | 118.5° | 120.0° |
| C5' | C4' | O4' | 111.3° | 110.6° |
| C5' | C4' | C3' | 111.9° | 110.7° |
| C5' | C4' | H4' | 105.4° | 110.5° |
| O4' | C4' | C3' | 105.4° | 103.7° |
| O4' | C4' | H4' | 111.8° | 110.6° |
| C4' | O4' | C1' | 107.9° | 107.0° |
| C3' | C4' | H4' | 111.3° | 110.6° |
| C4' | C3' | O3' | 109.3° | 111.2° |
| C4' | C3' | C2' | 98.1° | 102.0° |
| C4' | C3' | H3' | 116.4° | 110.8° |
| O4' | C1' | C2' | 105.3° | 107.3° |
| O4' | C1' | N9 | 107.6° | 109.9° |
| O4' | C1' | H1' | 113.6° | 109.8° |
| O3' | C3' | C2' | 108.7° | 110.9° |
| O3' | C3' | H3' | 107.0° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 106.8° |
| C2' | C3' | H3' | 116.9° | 110.9° |
| C3' | C2' | O2' | 109.5° | 110.5° |
| C3' | C2' | C1' | 99.6° | 104.3° |
| C3' | C2' | H2' | 115.8° | 110.6° |
| O2' | C2' | C1' | 110.0° | 110.5° |
| O2' | C2' | H2' | 106.4° | 110.4° |
| C2' | O2' | HO2' | 109.5° | 106.8° |
| C1' | C2' | H2' | 115.4° | 110.5° |
| C2' | C1' | N9 | 110.4° | 110.0° |
| C2' | C1' | H1' | 110.9° | 109.9° |
| N9 | C1' | H1' | 108.9° | 109.9° |
| C1' | N9 | C8 | 126.6° | 126.3° |
| C1' | N9 | C4 | 125.2° | 126.3° |
| C8 | N9 | C4 | 108.2° | 107.4° |
| N9 | C8 | N7 | 109.4° | 110.0° |
| N9 | C8 | H8 | 125.3° | 125.0° |
| N9 | C4 | C5 | 107.1° | 106.0° |
| N9 | C4 | N3 | 133.3° | 134.9° |
| N7 | C8 | H8 | 125.3° | 125.0° |
| C8 | N7 | C5 | 108.1° | 109.4° |
| N7 | C5 | C4 | 107.2° | 107.1° |
| N7 | C5 | C6 | 134.5° | 134.7° |
| C4 | C5 | C6 | 118.2° | 118.1° |
| C5 | C4 | N3 | 119.6° | 119.1° |
| C5 | C6 | N1 | 118.8° | 118.5° |
| C5 | C6 | N6 | 120.9° | 120.8° |
| C4 | N3 | C2 | 120.5° | 120.6° |
| N3 | C2 | N1 | 121.5° | 122.5° |
| N3 | C2 | H2 | 119.3° | 118.8° |
| N1 | C2 | H2 | 119.3° | 118.8° |
| C2 | N1 | C6 | 121.3° | 121.2° |
| N1 | C6 | N6 | 120.3° | 120.8° |
| C6 | N6 | HN61 | 125.2° | 120.0° |
| C6 | N6 | HN62 | 109.5° | 120.0° |
| HN61 | N6 | HN62 | 125.3° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C52 | N53 | H531 | H532 | 120.0° | 113.8° |
| N53 | C52 | C51 | H521 | 120.1° | 120.0° |
| N53 | C52 | C51 | H522 | 120.0° | 120.0° |
| N53 | C52 | H521 | H522 | 120.1° | 120.1° |
| N53 | C52 | C51 | N5' | 57.6° | 180.0° |
| N53 | C52 | C51 | H511 | 177.8° | 60.0° |
| N53 | C52 | C51 | H512 | 62.4° | 60.0° |
| H531 | N53 | C52 | C51 | 14.4° | 66.2° |
| H531 | N53 | C52 | H521 | 134.5° | 173.8° |
| H531 | N53 | C52 | H522 | 105.6° | 53.7° |
| H532 | N53 | C52 | C51 | 134.4° | 179.9° |
| H532 | N53 | C52 | H521 | 105.5° | 60.0° |
| H532 | N53 | C52 | H522 | 14.4° | 60.1° |
| C51 | C52 | H521 | H522 | 120.1° | 120.0° |
| C52 | C51 | N5' | H511 | 120.2° | 120.0° |
| C52 | C51 | N5' | H512 | 120.0° | 120.0° |
| C52 | C51 | H511 | H512 | 120.1° | 120.1° |
| C52 | C51 | N5' | C5' | 97.0° | 180.0° |
| C52 | C51 | N5' | HN5' | 83.0° | 0.0° |
| H521 | C52 | C51 | N5' | 62.5° | 60.0° |
| H521 | C52 | C51 | H511 | 57.6° | 180.0° |
| H521 | C52 | C51 | H512 | 177.4° | 60.0° |
| H522 | C52 | C51 | N5' | 177.6° | 60.0° |
| H522 | C52 | C51 | H511 | 62.2° | 60.0° |
| H522 | C52 | C51 | H512 | 57.6° | 180.0° |
| N5' | C51 | H511 | H512 | 120.2° | 120.0° |
| C51 | N5' | C5' | HN5' | 180.0° | 180.0° |
| C51 | N5' | C5' | O5' | 0.7° | 0.0° |
| C51 | N5' | C5' | C4' | 180.0° | 179.9° |
| H511 | C51 | N5' | C5' | 23.2° | 60.0° |
| H511 | C51 | N5' | HN5' | 156.8° | 120.0° |
| H512 | C51 | N5' | C5' | 143.0° | 60.0° |
| H512 | C51 | N5' | HN5' | 37.0° | 120.0° |
| N5' | C5' | O5' | C4' | 179.3° | 179.9° |
| N5' | C5' | C4' | O4' | 101.6° | 178.6° |
| N5' | C5' | C4' | C3' | 140.9° | 67.2° |
| N5' | C5' | C4' | H4' | 19.8° | 55.8° |
| HN5' | N5' | C5' | O5' | 179.3° | 180.0° |
| HN5' | N5' | C5' | C4' | 0.0° | 0.0° |
| O5' | C5' | C4' | O4' | 77.8° | 1.5° |
| O5' | C5' | C4' | C3' | 39.8° | 112.8° |
| O5' | C5' | C4' | H4' | 160.8° | 124.3° |
| C5' | C4' | O4' | C3' | 121.4° | 118.6° |
| C5' | C4' | O4' | H4' | 117.5° | 122.8° |
| C5' | C4' | C3' | H4' | 117.6° | 122.9° |
| C5' | C4' | O4' | C1' | 140.4° | 158.6° |
| C5' | C4' | C3' | O3' | 84.3° | 86.3° |
| C5' | C4' | C3' | C2' | 162.5° | 155.4° |
| C5' | C4' | C3' | H3' | 37.0° | 37.3° |
| O4' | C4' | C3' | H4' | 121.4° | 118.5° |
| O4' | C4' | C3' | O3' | 154.7° | 155.1° |
| O4' | C4' | C3' | C2' | 41.5° | 36.8° |
| O4' | C4' | C3' | H3' | 84.0° | 81.3° |
| C4' | O4' | C1' | C2' | 11.9° | 26.5° |
| C4' | O4' | C1' | N9 | 105.8° | 146.1° |
| C4' | O4' | C1' | H1' | 133.6° | 92.9° |
| C3' | C4' | O4' | C1' | 18.9° | 39.9° |
| C4' | C3' | O3' | C2' | 106.1° | 112.8° |
| C4' | C3' | O3' | H3' | 126.8° | 123.6° |
| C4' | C3' | C2' | H3' | 125.1° | 118.0° |
| C4' | C3' | O3' | HO3' | 161.2° | 67.2° |
| C4' | C3' | C2' | O2' | 68.8° | 98.0° |
| C4' | C3' | C2' | C1' | 46.5° | 20.6° |
| C4' | C3' | C2' | H2' | 170.9° | 139.4° |
| H4' | C4' | O4' | C1' | 102.1° | 78.7° |
| H4' | C4' | C3' | O3' | 33.3° | 36.6° |
| H4' | C4' | C3' | C2' | 79.9° | 81.7° |
| H4' | C4' | C3' | H3' | 154.6° | 160.2° |
| O4' | C1' | C2' | C3' | 37.6° | 2.2° |
| O4' | C1' | C2' | O2' | 77.4° | 120.9° |
| O4' | C1' | C2' | N9 | 115.8° | 119.5° |
| O4' | C1' | C2' | H1' | 123.4° | 119.3° |
| O4' | C1' | C2' | H2' | 162.3° | 116.7° |
| O4' | C1' | N9 | H1' | 123.6° | 120.9° |
| O4' | C1' | N9 | C8 | 21.4° | 23.6° |
| O4' | C1' | N9 | C4 | 156.1° | 156.7° |
| O3' | C3' | C2' | H3' | 121.2° | 123.5° |
| O3' | C3' | C2' | O2' | 44.9° | 20.5° |
| O3' | C3' | C2' | C1' | 160.2° | 139.1° |
| O3' | C3' | C2' | H2' | 75.4° | 102.1° |
| C2' | C3' | O3' | HO3' | 55.1° | 180.0° |
| C3' | C2' | O2' | C1' | 108.4° | 114.8° |
| C3' | C2' | O2' | H2' | 125.9° | 122.7° |
| C3' | C2' | C1' | H2' | 124.7° | 118.8° |
| C3' | C2' | O2' | HO2' | 8.0° | 65.1° |
| C3' | C2' | C1' | N9 | 78.3° | 121.7° |
| C3' | C2' | C1' | H1' | 160.9° | 117.2° |
| H3' | C3' | O3' | HO3' | 72.0° | 56.4° |
| H3' | C3' | C2' | O2' | 166.1° | 144.0° |
| H3' | C3' | C2' | C1' | 78.6° | 97.4° |
| H3' | C3' | C2' | H2' | 45.8° | 21.4° |
| O2' | C2' | C1' | H2' | 120.4° | 122.5° |
| O2' | C2' | C1' | N9 | 166.8° | 119.7° |
| O2' | C2' | C1' | H1' | 46.0° | 1.5° |
| C1' | C2' | O2' | HO2' | 100.4° | 180.0° |
| C2' | C1' | N9 | H1' | 122.0° | 121.2° |
| C2' | C1' | N9 | C8 | 93.0° | 94.3° |
| C2' | C1' | N9 | C4 | 89.4° | 85.4° |
| H2' | C2' | O2' | HO2' | 133.9° | 57.5° |
| H2' | C2' | C1' | N9 | 46.4° | 2.8° |
| H2' | C2' | C1' | H1' | 74.4° | 124.0° |
| C1' | N9 | C8 | C4 | 177.9° | 179.7° |
| C1' | N9 | C8 | N7 | 177.7° | 180.0° |
| C1' | N9 | C8 | H8 | 2.2° | 0.0° |
| C1' | N9 | C4 | C5 | 177.8° | 179.9° |
| C1' | N9 | C4 | N3 | 0.6° | 0.8° |
| H1' | C1' | N9 | C8 | 145.0° | 144.5° |
| H1' | C1' | N9 | C4 | 32.6° | 35.8° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.1° | 0.0° |
| C8 | N9 | C4 | C5 | 0.1° | 0.4° |
| C8 | N9 | C4 | N3 | 178.5° | 179.5° |
| C4 | N9 | C8 | N7 | 0.2° | 0.3° |
| C4 | N9 | C8 | H8 | 179.9° | 179.7° |
| N9 | C4 | C5 | N7 | 0.1° | 0.4° |
| N9 | C4 | C5 | N3 | 178.7° | 179.2° |
| N9 | C4 | C5 | C6 | 178.9° | 179.8° |
| N9 | C4 | N3 | C2 | 178.1° | 179.5° |
| C8 | N7 | C5 | C4 | 0.0° | 0.2° |
| C8 | N7 | C5 | C6 | 178.7° | 180.0° |
| H8 | C8 | N7 | C5 | 179.9° | 180.0° |
| N7 | C5 | C4 | C6 | 178.9° | 179.8° |
| N7 | C5 | C4 | N3 | 178.7° | 179.6° |
| N7 | C5 | C6 | N1 | 178.2° | 180.0° |
| N7 | C5 | C6 | N6 | 2.4° | 0.1° |
| C5 | C4 | N3 | C2 | 0.1° | 0.6° |
| C4 | C5 | C6 | N1 | 0.4° | 0.2° |
| C4 | C5 | C6 | N6 | 179.0° | 179.7° |
| C6 | C5 | C4 | N3 | 0.2° | 0.6° |
| C5 | C6 | N1 | C2 | 0.2° | 0.1° |
| C5 | C6 | N1 | N6 | 179.4° | 179.9° |
| C5 | C6 | N6 | HN61 | 179.7° | 0.0° |
| C5 | C6 | N6 | HN62 | 0.3° | 180.0° |
| C4 | N3 | C2 | N1 | 0.3° | 0.3° |
| C4 | N3 | C2 | H2 | 179.7° | 179.7° |
| N3 | C2 | N1 | H2 | 180.0° | 180.0° |
| N3 | C2 | N1 | C6 | 0.1° | 0.1° |
| C2 | N1 | C6 | N6 | 179.2° | 180.0° |
| H2 | C2 | N1 | C6 | 179.9° | 179.9° |
| N1 | C6 | N6 | HN61 | 0.3° | 179.9° |
| N1 | C6 | N6 | HN62 | 179.7° | 0.0° |
| C6 | N6 | HN61 | HN62 | 180.0° | 180.0° |
