N
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 1.48Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.47Å | |
| P | OP2 | sing | 1.61Å | 1.46Å | |
| P | O5' | sing | 1.61Å | 1.56Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.48Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.49Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.50Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.55Å | 1.54Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C1' | H1'2 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| OP3 | P | OP1 | 111.1° | 109.5° |
| OP3 | P | OP2 | 114.6° | 109.5° |
| OP3 | P | O5' | 100.9° | 109.5° |
| OP1 | P | OP2 | 112.9° | 109.5° |
| OP1 | P | O5' | 104.2° | 109.4° |
| OP2 | P | O5' | 112.0° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | O5' | C5' | 126.9° | 123.0° |
| O5' | C5' | C4' | 107.2° | 109.5° |
| O5' | C5' | H5' | 110.2° | 109.5° |
| O5' | C5' | H5'' | 110.7° | 109.5° |
| C4' | C5' | H5' | 110.2° | 109.5° |
| C4' | C5' | H5'' | 110.7° | 109.5° |
| C5' | C4' | O4' | 112.3° | 109.9° |
| C5' | C4' | C3' | 110.6° | 109.9° |
| C5' | C4' | H4' | 106.2° | 109.9° |
| H5' | C5' | H5'' | 107.8° | 109.4° |
| O4' | C4' | C3' | 107.5° | 107.3° |
| O4' | C4' | H4' | 109.3° | 109.9° |
| C4' | O4' | C1' | 113.1° | 107.0° |
| C3' | C4' | H4' | 111.1° | 110.0° |
| C4' | C3' | O3' | 109.0° | 110.5° |
| C4' | C3' | C2' | 104.9° | 104.2° |
| C4' | C3' | H3' | 113.5° | 110.5° |
| O4' | C1' | C2' | 103.8° | 103.5° |
| O4' | C1' | H1' | 111.4° | 110.6° |
| O4' | C1' | H1'2 | 112.6° | 110.6° |
| O3' | C3' | C2' | 111.5° | 110.5° |
| O3' | C3' | H3' | 107.1° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 111.0° | 110.6° |
| C3' | C2' | O2' | 111.1° | 111.0° |
| C3' | C2' | C1' | 108.3° | 102.1° |
| C3' | C2' | H2' | 109.6° | 110.9° |
| O2' | C2' | C1' | 110.7° | 110.9° |
| O2' | C2' | H2' | 107.1° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C1' | C2' | H2' | 110.0° | 110.9° |
| C2' | C1' | H1' | 111.4° | 110.7° |
| C2' | C1' | H1'2 | 112.6° | 110.7° |
| H1' | C1' | H1'2 | 105.2° | 110.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 130.3° | 120.1° |
| OP3 | P | OP1 | O5' | 107.9° | 120.0° |
| OP3 | P | OP2 | O5' | 114.1° | 120.0° |
| OP3 | P | OP2 | HOP2 | 177.9° | 59.9° |
| OP3 | P | O5' | C5' | 127.3° | 175.0° |
| HOP3 | OP3 | P | OP1 | 135.6° | 60.0° |
| HOP3 | OP3 | P | OP2 | 6.2° | 60.0° |
| HOP3 | OP3 | P | O5' | 114.3° | 180.0° |
| OP1 | P | OP2 | O5' | 117.3° | 120.0° |
| OP1 | P | OP2 | HOP2 | 53.5° | 180.0° |
| OP1 | P | O5' | C5' | 117.4° | 55.0° |
| OP2 | P | O5' | C5' | 5.0° | 65.0° |
| O5' | P | OP2 | HOP2 | 63.8° | 60.0° |
| P | O5' | C5' | C4' | 132.4° | 180.0° |
| P | O5' | C5' | H5' | 107.6° | 60.0° |
| P | O5' | C5' | H5'' | 11.5° | 59.9° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.9° | 120.0° |
| O5' | C5' | H5' | H5'' | 120.9° | 120.0° |
| O5' | C5' | C4' | O4' | 59.9° | 66.5° |
| O5' | C5' | C4' | C3' | 179.9° | 175.7° |
| O5' | C5' | C4' | H4' | 59.5° | 54.6° |
| C4' | C5' | H5' | H5'' | 120.9° | 120.0° |
| C5' | C4' | O4' | C3' | 121.8° | 119.4° |
| C5' | C4' | O4' | H4' | 117.5° | 121.1° |
| C5' | C4' | C3' | H4' | 117.6° | 121.1° |
| C5' | C4' | O4' | C1' | 112.4° | 145.9° |
| C5' | C4' | C3' | O3' | 132.5° | 119.8° |
| C5' | C4' | C3' | C2' | 108.0° | 121.5° |
| C5' | C4' | C3' | H3' | 13.3° | 2.6° |
| H5' | C5' | C4' | O4' | 60.1° | 53.5° |
| H5' | C5' | C4' | C3' | 60.0° | 64.3° |
| H5' | C5' | C4' | H4' | 179.5° | 174.6° |
| H5'' | C5' | C4' | O4' | 179.2° | 173.5° |
| H5'' | C5' | C4' | C3' | 59.2° | 55.7° |
| H5'' | C5' | C4' | H4' | 61.4° | 65.4° |
| O4' | C4' | C3' | H4' | 119.5° | 119.5° |
| O4' | C4' | C3' | O3' | 104.7° | 120.8° |
| O4' | C4' | C3' | C2' | 14.9° | 2.1° |
| O4' | C4' | C3' | H3' | 136.1° | 116.8° |
| C4' | O4' | C1' | C2' | 0.2° | 40.1° |
| C4' | O4' | C1' | H1' | 119.8° | 78.5° |
| C4' | O4' | C1' | H1'2 | 122.2° | 158.6° |
| C3' | C4' | O4' | C1' | 9.4° | 26.5° |
| C4' | C3' | O3' | C2' | 115.3° | 114.8° |
| C4' | C3' | O3' | H3' | 123.1° | 122.5° |
| C4' | C3' | C2' | H3' | 122.9° | 118.8° |
| C4' | C3' | O3' | HO3' | 32.2° | 180.0° |
| C4' | C3' | C2' | O2' | 137.0° | 139.1° |
| C4' | C3' | C2' | C1' | 15.1° | 20.9° |
| C4' | C3' | C2' | H2' | 104.8° | 97.3° |
| H4' | C4' | O4' | C1' | 130.1° | 93.0° |
| H4' | C4' | C3' | O3' | 14.9° | 1.2° |
| H4' | C4' | C3' | C2' | 134.4° | 117.5° |
| H4' | C4' | C3' | H3' | 104.3° | 123.7° |
| O4' | C1' | C2' | C3' | 9.7° | 37.0° |
| O4' | C1' | C2' | O2' | 131.8° | 155.2° |
| O4' | C1' | C2' | H1' | 120.0° | 118.5° |
| O4' | C1' | C2' | H1'2 | 122.0° | 118.5° |
| O4' | C1' | C2' | H2' | 110.0° | 81.2° |
| O4' | C1' | H1' | H1'2 | 122.3° | 122.9° |
| O3' | C3' | C2' | H3' | 119.3° | 122.5° |
| O3' | C3' | C2' | O2' | 19.2° | 20.4° |
| O3' | C3' | C2' | C1' | 102.7° | 97.8° |
| O3' | C3' | C2' | H2' | 137.4° | 144.0° |
| C2' | C3' | O3' | HO3' | 147.5° | 65.2° |
| C3' | C2' | O2' | C1' | 120.4° | 112.7° |
| C3' | C2' | O2' | H2' | 119.7° | 123.7° |
| C3' | C2' | C1' | H2' | 119.8° | 118.2° |
| C3' | C2' | O2' | HO2' | 45.4° | 180.0° |
| C3' | C2' | C1' | H1' | 110.3° | 81.5° |
| C3' | C2' | C1' | H1'2 | 131.8° | 155.5° |
| H3' | C3' | O3' | HO3' | 90.9° | 57.5° |
| H3' | C3' | C2' | O2' | 100.1° | 102.2° |
| H3' | C3' | C2' | C1' | 138.1° | 139.6° |
| H3' | C3' | C2' | H2' | 18.1° | 21.5° |
| O2' | C2' | C1' | H2' | 118.2° | 123.6° |
| O2' | C2' | C1' | H1' | 11.8° | 36.7° |
| O2' | C2' | C1' | H1'2 | 106.2° | 86.3° |
| C1' | C2' | O2' | HO2' | 75.0° | 67.3° |
| C2' | C1' | H1' | H1'2 | 122.3° | 123.0° |
| H2' | C2' | O2' | HO2' | 165.0° | 56.3° |
| H2' | C2' | C1' | H1' | 130.0° | 160.3° |
| H2' | C2' | C1' | H1'2 | 12.0° | 37.3° |
