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Summary Geometry Related PDB entries

MZY

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
S2	C2	doub	1.71Å	1.78Å
C2	N3	sing	1.35Å	1.34Å
C2	N1	sing	1.35Å	1.33Å
N3	C3A	sing	1.39Å	1.39Å
N1	C1A	sing	1.39Å	1.37Å
C3A	C1A	doub	1.33Å	1.38Å
C3A	H1	sing	1.08Å	1.08Å
C1A	H2	sing	1.08Å	1.08Å
N3	H3	sing	0.97Å	1.00Å
N1	H4	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S2	C2	N3	125.6°	125.9°
S2	C2	N1	120.5°	125.9°
N3	C2	N1	113.9°	108.1°
C2	N3	C3A	103.4°	108.0°
C2	N3	H3	128.3°	126.0°
C2	N1	C1A	106.3°	108.0°
C2	N1	H4	126.9°	126.0°
N3	C3A	C1A	109.4°	107.9°
N3	C3A	H1	125.3°	126.0°
C3A	N3	H3	128.4°	126.0°
N1	C1A	C3A	107.1°	107.9°
N1	C1A	H2	126.5°	126.0°
C1A	N1	H4	126.8°	126.0°
C1A	C3A	H1	125.3°	126.1°
C3A	C1A	H2	126.5°	126.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S2	C2	N3	N1	179.0°	179.7°
S2	C2	N3	C3A	178.5°	180.0°
S2	C2	N1	C1A	177.8°	179.8°
S2	C2	N3	H3	1.6°	0.0°
S2	C2	N1	H4	2.1°	0.0°
C2	N3	C3A	H3	180.0°	180.0°
N3	C2	N1	C1A	1.2°	0.5°
C2	N3	C3A	C1A	0.4°	0.0°
C2	N3	C3A	H1	179.6°	180.0°
N3	C2	N1	H4	178.8°	179.8°
N1	C2	N3	C3A	0.5°	0.3°
C2	N1	C1A	H4	180.0°	179.8°
C2	N1	C1A	C3A	1.3°	0.5°
C2	N1	C1A	H2	178.7°	179.9°
N1	C2	N3	H3	179.5°	179.7°
N3	C3A	C1A	N1	1.1°	0.3°
N3	C3A	C1A	H1	180.0°	180.0°
N3	C3A	C1A	H2	178.9°	180.0°
N1	C1A	C3A	H2	180.0°	179.7°
N1	C1A	C3A	H1	178.9°	179.7°
C1A	C3A	N3	H3	179.6°	180.0°
C3A	C1A	N1	H4	178.7°	179.7°
H1	C3A	C1A	H2	1.1°	0.1°
H1	C3A	N3	H3	0.4°	0.0°
H2	C1A	N1	H4	1.3°	0.1°

248335

PDB entries from 2026-01-28

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