MZP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.57Å | 1.48Å | |
| P | O2P | sing | 1.57Å | 1.47Å | |
| P | O3P | sing | 1.57Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.53Å | |
| O5' | C5' | sing | 1.43Å | 1.46Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| C4' | H4'C | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.46Å | |
| C3' | O3' | sing | 1.43Å | 1.40Å | |
| C3' | C2' | sing | 1.55Å | 1.54Å | |
| C3' | H3'C | sing | 1.09Å | 1.11Å | |
| O3' | H3'O | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.44Å | |
| C2' | C1' | sing | 1.55Å | 1.51Å | |
| C2' | H2'C | sing | 1.09Å | 1.12Å | |
| O2' | H2'O | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.46Å | 1.49Å | |
| C1' | H1'C | sing | 1.09Å | 1.12Å | |
| N1 | C2 | sing | 1.36Å | 1.34Å | Aromatic |
| N1 | C5 | sing | 1.36Å | 1.35Å | Aromatic |
| C2 | N3 | doub | 1.30Å | 1.28Å | Aromatic |
| C2 | HC2 | sing | 1.08Å | 1.10Å | |
| N3 | C4 | sing | 1.36Å | 1.35Å | Aromatic |
| N3 | HN3 | sing | 0.97Å | 1.02Å | |
| C4 | C6 | sing | 1.47Å | 1.49Å | |
| C4 | C5 | doub | 1.38Å | 1.36Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.22Å | |
| C6 | N6 | sing | 1.35Å | 1.39Å | |
| C5 | O5 | sing | 1.35Å | 1.37Å | |
| N6 | HN61 | sing | 0.97Å | 1.02Å | |
| N6 | HN62 | sing | 0.97Å | 1.02Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 111.8° | 109.5° |
| O1P | P | O3P | 109.3° | 109.4° |
| O1P | P | O5' | 108.1° | 109.5° |
| O2P | P | O3P | 113.0° | 109.5° |
| O2P | P | O5' | 108.6° | 109.5° |
| O3P | P | O5' | 105.9° | 109.5° |
| P | O5' | C5' | 119.8° | 106.8° |
| O5' | C5' | C4' | 103.3° | 109.5° |
| O5' | C5' | H5'1 | 114.6° | 109.5° |
| O5' | C5' | H5'2 | 114.5° | 109.5° |
| C4' | C5' | H5'1 | 114.5° | 109.5° |
| C4' | C5' | H5'2 | 114.6° | 109.5° |
| C5' | C4' | O4' | 111.9° | 110.4° |
| C5' | C4' | C3' | 113.5° | 110.5° |
| C5' | C4' | H4'C | 103.3° | 110.3° |
| H5'1 | C5' | H5'2 | 95.9° | 109.5° |
| O4' | C4' | C3' | 103.6° | 104.8° |
| O4' | C4' | H4'C | 113.2° | 110.4° |
| C4' | O4' | C1' | 109.5° | 105.3° |
| C3' | C4' | H4'C | 111.7° | 110.3° |
| C4' | C3' | O3' | 111.3° | 110.5° |
| C4' | C3' | C2' | 103.0° | 104.1° |
| C4' | C3' | H3'C | 113.7° | 110.5° |
| O4' | C1' | C2' | 108.0° | 104.9° |
| O4' | C1' | N1 | 110.1° | 110.4° |
| O4' | C1' | H1'C | 112.5° | 110.4° |
| O3' | C3' | C2' | 112.6° | 110.5° |
| O3' | C3' | H3'C | 104.3° | 110.5° |
| C3' | O3' | H3'O | 111.3° | 106.8° |
| C2' | C3' | H3'C | 112.4° | 110.6° |
| C3' | C2' | O2' | 111.7° | 110.5° |
| C3' | C2' | C1' | 101.2° | 104.0° |
| C3' | C2' | H2'C | 114.0° | 110.5° |
| O2' | C2' | C1' | 111.1° | 110.8° |
| O2' | C2' | H2'C | 104.5° | 110.4° |
| C2' | O2' | H2'O | 111.7° | 106.8° |
| C1' | C2' | H2'C | 114.6° | 110.4° |
| C2' | C1' | N1 | 115.9° | 110.4° |
| C2' | C1' | H1'C | 106.3° | 110.4° |
| N1 | C1' | H1'C | 104.0° | 110.3° |
| C1' | N1 | C2 | 137.1° | 126.1° |
| C1' | N1 | C5 | 116.5° | 126.2° |
| C2 | N1 | C5 | 106.4° | 107.7° |
| N1 | C2 | N3 | 112.7° | 109.4° |
| N1 | C2 | HC2 | 125.5° | 125.3° |
| N1 | C5 | C4 | 105.4° | 106.5° |
| N1 | C5 | O5 | 128.5° | 126.8° |
| N3 | C2 | HC2 | 121.7° | 125.3° |
| C2 | N3 | C4 | 105.3° | 109.2° |
| C2 | N3 | HN3 | 125.4° | 125.5° |
| C4 | N3 | HN3 | 129.3° | 125.4° |
| N3 | C4 | C6 | 125.9° | 126.4° |
| N3 | C4 | C5 | 110.2° | 107.2° |
| C6 | C4 | C5 | 124.0° | 126.4° |
| C4 | C6 | O6 | 120.9° | 120.0° |
| C4 | C6 | N6 | 121.8° | 120.0° |
| C4 | C5 | O5 | 126.1° | 126.7° |
| O6 | C6 | N6 | 117.3° | 120.0° |
| C6 | N6 | HN61 | 121.8° | 120.0° |
| C6 | N6 | HN62 | 117.3° | 120.0° |
| HN61 | N6 | HN62 | 120.9° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 123.7° | 119.9° |
| O1P | P | O2P | O5' | 119.1° | 120.1° |
| O1P | P | O3P | O5' | 116.2° | 120.0° |
| O1P | P | O5' | C5' | 179.7° | 55.0° |
| O2P | P | O3P | O5' | 118.7° | 120.0° |
| O2P | P | O5' | C5' | 58.9° | 65.0° |
| O3P | P | O5' | C5' | 62.7° | 175.0° |
| P | O5' | C5' | C4' | 173.4° | 180.0° |
| P | O5' | C5' | H5'1 | 48.2° | 60.0° |
| P | O5' | C5' | H5'2 | 61.3° | 60.0° |
| O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
| O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 120.4° | 120.0° |
| O5' | C5' | C4' | O4' | 66.9° | 66.4° |
| O5' | C5' | C4' | C3' | 176.3° | 178.1° |
| O5' | C5' | C4' | H4'C | 55.2° | 55.8° |
| C4' | C5' | H5'1 | H5'2 | 120.4° | 120.0° |
| C5' | C4' | O4' | C3' | 122.6° | 119.0° |
| C5' | C4' | O4' | H4'C | 116.3° | 122.2° |
| C5' | C4' | C3' | H4'C | 116.3° | 122.3° |
| C5' | C4' | O4' | C1' | 145.6° | 159.5° |
| C5' | C4' | C3' | O3' | 80.7° | 98.4° |
| C5' | C4' | C3' | C2' | 158.5° | 142.9° |
| C5' | C4' | C3' | H3'C | 36.7° | 24.2° |
| H5'1 | C5' | C4' | O4' | 167.8° | 173.6° |
| H5'1 | C5' | C4' | C3' | 51.0° | 58.1° |
| H5'1 | C5' | C4' | H4'C | 70.1° | 64.2° |
| H5'2 | C5' | C4' | O4' | 58.4° | 53.6° |
| H5'2 | C5' | C4' | C3' | 58.4° | 61.9° |
| H5'2 | C5' | C4' | H4'C | 179.5° | 175.8° |
| O4' | C4' | C3' | H4'C | 122.2° | 118.8° |
| O4' | C4' | C3' | O3' | 157.7° | 142.7° |
| O4' | C4' | C3' | C2' | 36.9° | 24.0° |
| O4' | C4' | C3' | H3'C | 84.9° | 94.7° |
| C4' | O4' | C1' | C2' | 0.1° | 40.4° |
| C4' | O4' | C1' | N1 | 127.5° | 159.3° |
| C4' | O4' | C1' | H1'C | 117.0° | 78.4° |
| C3' | C4' | O4' | C1' | 23.0° | 40.5° |
| C4' | C3' | O3' | C2' | 115.0° | 114.7° |
| C4' | C3' | O3' | H3'C | 122.9° | 122.6° |
| C4' | C3' | C2' | H3'C | 122.7° | 118.7° |
| C4' | C3' | O3' | H3'O | 180.0° | 180.0° |
| C4' | C3' | C2' | O2' | 82.4° | 118.8° |
| C4' | C3' | C2' | C1' | 35.9° | 0.1° |
| C4' | C3' | C2' | H2'C | 159.4° | 118.6° |
| H4'C | C4' | O4' | C1' | 98.1° | 78.3° |
| H4'C | C4' | C3' | O3' | 35.6° | 23.9° |
| H4'C | C4' | C3' | C2' | 85.2° | 94.8° |
| H4'C | C4' | C3' | H3'C | 152.9° | 146.5° |
| O4' | C1' | C2' | C3' | 22.9° | 23.8° |
| O4' | C1' | C2' | O2' | 95.8° | 142.6° |
| O4' | C1' | C2' | N1 | 124.1° | 118.9° |
| O4' | C1' | C2' | H1'C | 120.9° | 118.9° |
| O4' | C1' | C2' | H2'C | 146.0° | 94.7° |
| O4' | C1' | N1 | H1'C | 120.8° | 122.3° |
| O4' | C1' | N1 | C2 | 86.4° | 22.0° |
| O4' | C1' | N1 | C5 | 92.9° | 157.7° |
| O3' | C3' | C2' | H3'C | 117.4° | 122.6° |
| O3' | C3' | C2' | O2' | 37.5° | 0.1° |
| O3' | C3' | C2' | C1' | 155.8° | 118.8° |
| O3' | C3' | C2' | H2'C | 80.7° | 122.7° |
| C2' | C3' | O3' | H3'O | 65.0° | 65.4° |
| C3' | C2' | O2' | C1' | 112.2° | 114.7° |
| C3' | C2' | O2' | H2'C | 123.7° | 122.6° |
| C3' | C2' | C1' | H2'C | 123.1° | 118.6° |
| C3' | C2' | O2' | H2'O | 180.0° | 61.4° |
| C3' | C2' | C1' | N1 | 101.2° | 142.8° |
| C3' | C2' | C1' | H1'C | 143.9° | 95.1° |
| H3'C | C3' | O3' | H3'O | 57.1° | 57.4° |
| H3'C | C3' | C2' | O2' | 154.9° | 122.5° |
| H3'C | C3' | C2' | C1' | 86.8° | 118.5° |
| H3'C | C3' | C2' | H2'C | 36.7° | 0.0° |
| O2' | C2' | C1' | H2'C | 118.2° | 122.7° |
| O2' | C2' | C1' | N1 | 140.1° | 98.5° |
| O2' | C2' | C1' | H1'C | 25.2° | 23.7° |
| C1' | C2' | O2' | H2'O | 67.8° | 176.2° |
| C2' | C1' | N1 | H1'C | 116.2° | 122.2° |
| C2' | C1' | N1 | C2 | 36.6° | 93.5° |
| C2' | C1' | N1 | C5 | 144.1° | 86.8° |
| H2'C | C2' | O2' | H2'O | 56.3° | 61.2° |
| H2'C | C2' | C1' | N1 | 21.9° | 24.2° |
| H2'C | C2' | C1' | H1'C | 93.0° | 146.4° |
| C1' | N1 | C2 | C5 | 179.3° | 179.8° |
| C1' | N1 | C2 | N3 | 178.9° | 180.0° |
| C1' | N1 | C2 | HC2 | 1.1° | 0.0° |
| C1' | N1 | C5 | C4 | 178.8° | 179.9° |
| C1' | N1 | C5 | O5 | 0.6° | 0.2° |
| H1'C | C1' | N1 | C2 | 152.8° | 144.3° |
| H1'C | C1' | N1 | C5 | 27.9° | 35.4° |
| N1 | C2 | N3 | HC2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| N1 | C2 | N3 | HN3 | 179.9° | 180.0° |
| C2 | N1 | C5 | C4 | 0.6° | 0.3° |
| C2 | N1 | C5 | O5 | 179.9° | 180.0° |
| C5 | N1 | C2 | N3 | 0.4° | 0.2° |
| C5 | N1 | C2 | HC2 | 179.6° | 179.8° |
| N1 | C5 | C4 | N3 | 0.6° | 0.4° |
| N1 | C5 | C4 | C6 | 179.1° | 179.9° |
| N1 | C5 | C4 | O5 | 179.5° | 179.7° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | C6 | 179.4° | 179.9° |
| C2 | N3 | C4 | C5 | 0.4° | 0.3° |
| HC2 | C2 | N3 | C4 | 179.9° | 179.9° |
| HC2 | C2 | N3 | HN3 | 0.1° | 0.0° |
| N3 | C4 | C6 | C5 | 179.7° | 179.6° |
| N3 | C4 | C6 | O6 | 0.3° | 180.0° |
| N3 | C4 | C6 | N6 | 179.9° | 0.1° |
| N3 | C4 | C5 | O5 | 179.9° | 180.0° |
| HN3 | N3 | C4 | C6 | 0.6° | 0.1° |
| HN3 | N3 | C4 | C5 | 179.6° | 179.8° |
| C4 | C6 | O6 | N6 | 179.6° | 179.9° |
| C6 | C4 | C5 | O5 | 0.4° | 0.3° |
| C4 | C6 | N6 | HN61 | 180.0° | 179.9° |
| C4 | C6 | N6 | HN62 | 0.4° | 0.3° |
| C5 | C4 | C6 | O6 | 179.4° | 0.4° |
| C5 | C4 | C6 | N6 | 0.3° | 179.7° |
| O6 | C6 | N6 | HN61 | 0.4° | 0.0° |
| O6 | C6 | N6 | HN62 | 180.0° | 179.8° |
| C6 | N6 | HN61 | HN62 | 179.6° | 179.8° |
