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SummaryGeometryRelated PDB entries

MYD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C53O51sing1.43Å1.45Å
C53H531sing1.09Å1.11Å
C53H532sing1.09Å1.12Å
C53H533sing1.09Å1.12Å
O51C46sing1.36Å1.42Å
C46C47doub1.39Å1.41ÅAromatic
C46C39sing1.39Å1.42ÅAromatic
C47C52sing1.51Å1.54Å
C47C48sing1.36Å1.42ÅAromatic
C52H521sing1.09Å1.12Å
C52H522sing1.09Å1.11Å
C52H523sing1.09Å1.11Å
C48C49sing1.51Å1.55Å
C48C41doub1.40Å1.42ÅAromatic
C49O50sing1.45Å1.45Å
C49H491sing1.09Å1.11Å
C49H492sing1.09Å1.12Å
O50C42sing1.34Å1.42Å
C42O43doub1.22Å1.25Å
C42C41sing1.47Å1.41Å
C41C40sing1.40Å1.42ÅAromatic
C40O31sing1.36Å1.37Å
C40C39doub1.39Å1.43ÅAromatic
O31H31sing0.97Å0.95Å
C39C38sing1.51Å1.55Å
C38C37sing1.53Å1.54Å
C38H381sing1.09Å1.11Å
C38H382sing1.09Å1.11Å
C37O36sing1.43Å1.45Å
C37H371sing1.09Å1.12Å
C37H372sing1.09Å1.12Å
O36P35sing1.61Å1.62Å
P35O45sing1.61Å1.64Å
P35O30doub1.48Å1.49Å
P35C34sing1.82Å1.33Å
O45H45sing0.97Å0.95Å
C34P33sing1.82Å1.34Å
C34H341sing1.09Å1.12Å
C34H342sing1.09Å1.12Å
P33O44sing1.61Å1.68Å
P33O29doub1.48Å1.50Å
P33O32sing1.61Å1.69Å
O44H44sing0.97Å0.95Å
O32C28sing1.43Å1.43Å
C28C27sing1.53Å1.50Å
C28H281sing1.09Å1.12Å
C28H282sing1.09Å1.12Å
C27O24sing1.44Å1.49Å
C27C26sing1.54Å1.61Å
C27H27sing1.09Å1.11Å
O24C23sing1.44Å1.47Å
C26O25sing1.43Å1.42Å
C26C22sing1.55Å1.56Å
C26H26sing1.09Å1.12Å
O25H25sing0.97Å0.95Å
C22O21sing1.43Å1.48Å
C22C23sing1.55Å1.58Å
C22H22sing1.09Å1.11Å
O21H21sing0.97Å0.95Å
C23N20sing1.46Å1.47Å
C23H23sing1.09Å1.11Å
N20C16sing1.36Å1.31ÅAromatic
N20C19sing1.37Å1.38ÅAromatic
C16N15doub1.30Å1.36ÅAromatic
C16H16sing1.08Å1.10Å
N15C14sing1.35Å1.37ÅAromatic
C14C19doub1.40Å1.39ÅAromatic
C14C13sing1.41Å1.40ÅAromatic
C19N18sing1.33Å1.38ÅAromatic
N18C17doub1.32Å1.35ÅAromatic
C17N12sing1.32Å1.34ÅAromatic
C17H17sing1.08Å1.10Å
N12C13doub1.33Å1.35ÅAromatic
C13N11sing1.38Å1.33Å
N11H111sing0.97Å1.02Å
N11H112sing0.97Å1.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O51C53H531123.2°109.4°
O51C53H532107.3°109.5°
O51C53H533107.3°109.5°
C53O51C46123.3°106.8°
H531C53H532107.4°109.5°
H531C53H533107.4°109.4°
H532C53H533102.4°109.5°
O51C46C47118.5°119.9°
O51C46C39120.0°119.8°
C47C46C39121.5°120.3°
C46C47C52119.4°119.9°
C46C47C48120.4°120.2°
C46C39C40117.6°120.0°
C46C39C38121.3°120.0°
C52C47C48120.2°119.9°
C47C52H521119.4°109.4°
C47C52H522108.7°109.5°
C47C52H523108.7°109.5°
C47C48C49130.4°133.3°
C47C48C41119.0°120.5°
H521C52H522108.6°109.5°
H521C52H523108.6°109.4°
H522C52H523101.4°109.5°
C49C48C41110.6°106.2°
C48C49O50101.0°106.3°
C48C49H491115.5°110.1°
C48C49H492115.5°110.1°
C48C41C42106.6°108.1°
C48C41C40120.3°119.4°
O50C49H491115.5°110.0°
O50C49H492115.4°110.1°
C49O50C42110.9°109.0°
H491C49H49294.9°110.1°
O50C42O43123.3°124.8°
O50C42C41110.9°110.3°
O43C42C41125.9°124.9°
C42C41C40133.1°132.5°
C41C40O31118.8°120.2°
C41C40C39121.3°119.6°
O31C40C39119.9°120.2°
C40O31H31118.8°106.8°
C40C39C38121.1°120.0°
C39C38C37109.5°109.5°
C39C38H381112.2°109.5°
C39C38H382112.2°109.5°
C37C38H381112.2°109.5°
C37C38H382112.3°109.4°
C38C37O36114.7°109.5°
C38C37H371110.3°109.5°
C38C37H372110.3°109.4°
H381C38H38298.2°109.4°
O36C37H371110.3°109.5°
O36C37H372110.3°109.5°
C37O36P35114.9°106.8°
H371C37H372100.0°109.4°
O36P35O4595.9°109.5°
O36P35O30105.5°109.5°
O36P35C34121.0°109.5°
O45P35O30104.6°109.5°
O45P35C34116.9°109.5°
P35O45H4595.8°106.9°
O30P35C34110.8°109.4°
P35C34P33115.2°109.5°
P35C34H341110.1°109.4°
P35C34H342110.1°109.5°
P33C34H341110.2°109.5°
P33C34H342110.2°109.5°
C34P33O44115.2°109.5°
C34P33O29117.1°109.5°
C34P33O32116.7°109.5°
H341C34H342100.1°109.5°
O44P33O29103.1°109.4°
O44P33O3297.9°109.5°
P33O44H44115.3°106.8°
O29P33O32104.1°109.5°
P33O32C28114.5°106.9°
O32C28C27121.9°109.5°
O32C28H281107.8°109.5°
O32C28H282107.8°109.4°
C27C28H281107.8°109.5°
C27C28H282107.8°109.4°
C28C27O24111.2°109.8°
C28C27C26112.4°109.9°
C28C27H27106.1°109.9°
H281C28H282102.0°109.5°
O24C27C26109.2°107.4°
O24C27H27109.6°109.9°
C27O24C23105.9°107.0°
C26C27H27108.3°109.9°
C27C26O25103.4°110.8°
C27C26C2293.7°104.0°
C27C26H26121.7°110.5°
O24C23C22105.3°103.5°
O24C23N20106.5°110.6°
O24C23H23114.6°110.6°
O25C26C22107.5°110.5°
O25C26H26110.3°110.5°
C26O25H25103.4°106.8°
C22C26H26118.2°110.5°
C26C22O21113.5°110.9°
C26C22C23103.5°102.1°
C26C22H22112.3°111.0°
O21C22C23113.5°110.9°
O21C22H22102.1°110.8°
C22O21H21113.5°106.8°
C23C22H22112.3°110.9°
C22C23N20111.3°110.8°
C22C23H23110.1°110.6°
N20C23H23109.0°110.5°
C23N20C16131.3°126.3°
C23N20C19119.9°126.3°
C16N20C19108.3°107.4°
N20C16N15109.9°110.0°
N20C16H16123.4°125.0°
N20C19C14107.3°106.0°
N20C19N18133.5°134.9°
N15C16H16126.7°125.0°
C16N15C14108.0°109.4°
N15C14C19106.5°107.2°
N15C14C13135.2°134.7°
C19C14C13118.1°118.2°
C14C19N18119.2°119.1°
C14C13N12119.9°118.5°
C14C13N11120.2°120.8°
C19N18C17121.3°120.6°
N18C17N12119.7°122.5°
N18C17H17120.2°118.8°
N12C17H17120.1°118.8°
C17N12C13121.6°121.2°
N12C13N11119.8°120.7°
C13N11H111120.2°120.0°
C13N11H112108.4°120.0°
H111N11H112108.3°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O51C53H531H532125.2°120.0°
O51C53H531H533125.3°120.0°
O51C53H532H533112.8°120.0°
C53O51C46C47118.7°90.0°
C53O51C46C3961.1°90.3°
H531C53H532H533112.9°120.0°
H531C53O51C46180.0°180.0°
H532C53O51C4654.7°60.0°
H533C53O51C4654.7°60.0°
O51C46C47C39179.7°179.7°
O51C46C47C520.5°0.0°
O51C46C47C48179.9°180.0°
O51C46C39C40179.7°179.7°
O51C46C39C380.3°0.2°
C46C47C52C48179.6°179.9°
C46C47C52H521180.0°90.0°
C46C47C52H52254.8°150.0°
C46C47C52H52354.8°30.0°
C46C47C48C49180.0°179.9°
C46C47C48C410.5°0.0°
C47C46C39C400.0°0.5°
C47C46C39C38179.4°180.0°
C39C46C47C52179.7°179.8°
C39C46C47C480.1°0.3°
C46C39C40C410.2°0.5°
C46C39C40O31179.6°179.7°
C46C39C40C38179.4°179.5°
C46C39C38C37101.0°90.6°
C46C39C38H381133.7°29.5°
C46C39C38H38224.3°149.4°
C47C52H521H522125.2°120.0°
C47C52H521H523125.2°120.0°
C47C52H522H523114.4°120.0°
C52C47C48C490.4°0.1°
C52C47C48C41179.9°179.9°
C48C47C52H5210.4°90.1°
C48C47C52H522125.6°30.0°
C48C47C52H523124.8°150.0°
C47C48C49C41179.6°180.0°
C47C48C49O50179.7°180.0°
C47C48C49H49154.4°60.9°
C47C48C49H49255.1°60.7°
C47C48C41C42179.9°179.9°
C47C48C41C400.7°0.1°
H521C52H522H523114.3°120.0°
C48C49O50H491125.3°119.2°
C48C49O50H492125.3°119.3°
C48C49H491H492121.3°121.6°
C48C49O50C420.1°0.0°
C49C48C41C420.2°0.0°
C49C48C41C40179.6°179.9°
C41C48C49O500.1°0.0°
C41C48C49H491125.2°119.2°
C41C48C49H492125.3°119.3°
C48C41C42O500.3°0.0°
C48C41C42O43179.9°180.0°
C48C41C42C40179.3°179.8°
C48C41C40O31180.0°180.0°
C48C41C40C390.6°0.1°
O50C49H491H492121.2°121.5°
C49O50C42O43180.0°180.0°
C49O50C42C410.3°0.0°
H491C49O50C42125.4°119.2°
H492C49O50C42125.2°119.3°
O50C42O43C41179.7°180.0°
O50C42C41C40179.6°179.9°
O43C42C41C400.6°0.1°
C42C41C40O310.8°0.2°
C42C41C40C39179.8°179.7°
C41C40O31C39179.4°179.9°
C41C40O31H31180.0°90.1°
C41C40C39C38179.2°180.0°
O31C40C39C380.2°0.2°
C39C40O31H310.6°89.7°
C40C39C38C3778.4°89.9°
C40C39C38H38146.9°150.0°
C40C39C38H382156.4°30.1°
C39C38C37H381125.2°120.0°
C39C38C37H382125.2°120.0°
C39C38H381H382118.1°120.0°
C39C38C37O3660.7°180.0°
C39C38C37H37164.5°60.0°
C39C38C37H372174.0°60.0°
C37C38H381H382118.2°119.9°
C38C37O36H371125.2°120.1°
C38C37O36H372125.3°120.0°
C38C37H371H372116.1°119.9°
C38C37O36P35174.1°180.0°
H381C38C37O36174.1°59.9°
H381C38C37H37160.7°180.0°
H381C38C37H37248.8°60.1°
H382C38C37O3664.5°60.0°
H382C38C37H371170.2°60.1°
H382C38C37H37260.8°180.0°
O36C37H371H372116.2°120.0°
C37O36P35O4555.3°60.0°
C37O36P35O3051.7°60.0°
C37O36P35C34178.4°180.0°
H371C37O36P3548.9°60.0°
H372C37O36P3560.6°60.0°
O36P35O45O30107.8°120.0°
O36P35O45C34129.2°120.0°
O36P35O30C34132.6°120.0°
O36P35O45H45180.0°60.0°
O36P35C34P3390.4°180.0°
O36P35C34H34134.9°60.0°
O36P35C34H342144.3°60.0°
O45P35O30C34126.9°120.0°
O45P35C34P3325.6°60.0°
O45P35C34H341150.9°60.0°
O45P35C34H34299.7°180.0°
O30P35O45H4572.2°180.0°
O30P35C34P33145.4°60.0°
O30P35C34H34189.3°180.0°
O30P35C34H34220.0°60.0°
C34P35O45H4550.8°60.0°
P35C34P33H341125.3°120.0°
P35C34P33H342125.3°120.0°
P35C34H341H342115.9°120.0°
P35C34P33O44170.7°60.0°
P35C34P33O2949.2°60.0°
P35C34P33O3275.1°180.0°
P33C34H341H342116.0°120.0°
C34P33O44O29128.8°120.0°
C34P33O44O32124.6°120.0°
C34P33O29O32130.5°120.1°
C34P33O44H44180.0°60.0°
C34P33O32C2868.0°180.0°
H341C34P33O4445.5°60.0°
H341C34P33O2976.0°179.9°
H341C34P33O32159.6°60.0°
H342C34P33O4464.0°180.0°
H342C34P33O29174.5°60.1°
H342C34P33O3250.1°60.0°
O44P33O29O32101.8°120.0°
O44P33O32C2855.5°60.0°
O29P33O44H4451.1°180.0°
O29P33O32C28161.2°60.0°
O32P33O44H4455.4°60.0°
P33O32C28C27168.1°180.0°
P33O32C28H28142.8°60.0°
P33O32C28H28266.7°60.0°
O32C28C27H281125.3°120.0°
O32C28C27H282125.3°119.9°
O32C28H281H282113.4°119.9°
O32C28C27O2453.7°61.8°
O32C28C27C26176.4°179.7°
O32C28C27H2765.4°59.3°
C27C28H281H282113.3°120.0°
C28C27O24C26124.5°119.4°
C28C27O24H27117.0°121.1°
C28C27C26H27116.9°121.1°
C28C27O24C23143.9°145.9°
C28C27C26O2586.8°119.9°
C28C27C26C22164.2°121.4°
C28C27C26H2637.6°2.8°
H281C28C27O2471.6°58.2°
H281C28C27C2651.1°59.7°
H281C28C27H27169.2°179.3°
H282C28C27O24179.0°178.3°
H282C28C27C2658.3°60.4°
H282C28C27H2759.8°60.6°
O24C27C26H27119.3°119.6°
O24C27C26O25149.3°120.7°
O24C27C26C2240.3°2.0°
O24C27C26H2686.2°116.6°
C27O24C23C2210.9°40.1°
C27O24C23N20107.4°158.8°
C27O24C23H23132.0°78.4°
C26C27O24C2319.4°26.5°
C27C26O25C2298.3°114.7°
C27C26O25H26131.5°122.7°
C27C26C22H26129.1°118.6°
C27C26O25H25179.9°176.2°
C27C26C22O2178.8°139.2°
C27C26C22C2344.7°20.9°
C27C26C22H22166.0°97.2°
H27C27O24C2399.1°93.0°
H27C27C26O2530.1°1.1°
H27C27C26C2278.9°117.6°
H27C27C26H26154.5°123.9°
O24C23C22C2637.9°37.1°
O24C23C22O2185.5°155.3°
O24C23C22N20115.0°118.6°
O24C23C22H23124.0°118.5°
O24C23C22H22159.4°81.2°
O24C23N20H23124.2°122.9°
O24C23N20C1620.3°28.5°
O24C23N20C19150.6°151.7°
O25C26C22H26125.6°122.5°
O25C26C22O2126.5°20.3°
O25C26C22C23149.9°97.9°
O25C26C22H2288.7°143.9°
C22C26O25H2581.8°61.5°
C26C22O21C23117.8°112.7°
C26C22O21H22121.1°123.7°
C26C22C23H22121.4°118.3°
C26C22O21H21180.0°67.3°
C26C22C23N2077.1°155.7°
C26C22C23H23162.0°81.4°
H26C26O25H2548.4°61.1°
H26C26C22O21152.1°102.3°
H26C26C22C2384.5°139.5°
H26C26C22H2236.9°21.4°
O21C22C23H22115.2°123.5°
O21C22C23N20159.5°86.1°
O21C22C23H2338.5°36.8°
C23C22O21H2162.2°180.0°
C22C23N20H23121.6°123.0°
C22C23N20C1694.0°85.7°
C22C23N20C1995.2°94.1°
H22C22O21H2158.9°56.4°
H22C22C23N2044.3°37.4°
H22C22C23H2376.6°160.3°
C23N20C16C19171.6°179.8°
C23N20C16N15169.2°180.0°
C23N20C16H1610.8°0.1°
C23N20C19C14171.2°179.9°
C23N20C19N186.9°0.7°
H23C23N20C16144.4°151.4°
H23C23N20C1926.4°28.9°
N20C16N15H16180.0°179.9°
N20C16N15C142.4°0.1°
C16N20C19C141.5°0.3°
C16N20C19N18179.7°179.4°
C19N20C16N152.4°0.2°
C19N20C16H16177.5°179.7°
N20C19C14N150.1°0.3°
N20C19C14N18178.4°179.3°
N20C19C14C13176.0°179.8°
N20C19N18C17178.0°179.6°
C16N15C14C191.4°0.3°
C16N15C14C13173.5°180.0°
H16C16N15C14177.6°179.9°
N15C14C19C13175.9°179.8°
N15C14C19N18178.5°179.6°
N15C14C13N12178.7°180.0°
N15C14C13N111.8°0.1°
C14C19N18C174.1°0.6°
C19C14C13N124.3°0.3°
C19C14C13N11172.7°179.7°
C13C14C19N185.6°0.6°
C14C13N12C171.3°0.0°
C14C13N12N11177.0°179.9°
C14C13N11H111180.0°179.9°
C14C13N11H11254.7°0.1°
C19N18C17N121.0°0.3°
C19N18C17H17179.0°179.8°
N18C17N12H17180.0°179.9°
N18C17N12C130.4°0.0°
C17N12C13N11175.6°179.9°
H17C17N12C13179.6°179.9°
N12C13N11H1113.0°0.1°
N12C13N11H112122.2°180.0°
C13N11H111H112125.2°179.9°

222624

PDB entries from 2024-07-17

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