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Summary Geometry Related PDB entries

MTD

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5	C1	doub	0.00Å	1.23Å
O6	C1	sing	0.00Å	1.24Å
C1	C2	sing	0.00Å	1.53Å
C2	TE3	sing	0.00Å	2.08Å
C2	H21	sing	0.00Å	1.12Å
C2	H22	sing	0.00Å	1.12Å
TE3	C4	sing	0.00Å	2.05Å
C4	H41	sing	0.00Å	1.11Å
C4	H42	sing	0.00Å	1.12Å
C4	H43	sing	0.00Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O5	C1	O6	120.6°	90.0°
O5	C1	C2	118.7°	90.0°
O6	C1	C2	120.7°	90.0°
C1	C2	TE3	102.4°	90.0°
C1	C2	H21	114.9°	90.0°
C1	C2	H22	114.9°	90.0°
TE3	C2	H21	114.9°	90.0°
TE3	C2	H22	114.9°	90.0°
C2	TE3	C4	89.8°	90.0°
H21	C2	H22	95.5°	90.0°
TE3	C4	H41	89.8°	90.0°
TE3	C4	H42	120.0°	90.0°
TE3	C4	H43	120.0°	90.0°
H41	C4	H42	120.1°	90.0°
H41	C4	H43	120.1°	90.0°
H42	C4	H43	89.9°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5	C1	O6	C2	179.7°	90.0°
O5	C1	C2	TE3	155.8°	90.0°
O5	C1	C2	H21	30.5°	90.0°
O5	C1	C2	H22	78.9°	90.0°
O6	C1	C2	TE3	24.5°	90.0°
O6	C1	C2	H21	149.9°	90.0°
O6	C1	C2	H22	100.7°	90.0°
C1	C2	TE3	H21	125.3°	90.0°
C1	C2	TE3	H22	125.2°	90.0°
C1	C2	H21	H22	120.7°	90.0°
C1	C2	TE3	C4	170.0°	90.0°
TE3	C2	H21	H22	120.8°	90.0°
C2	TE3	C4	H41	180.0°	90.0°
C2	TE3	C4	H42	54.7°	90.0°
C2	TE3	C4	H43	54.7°	90.0°
H21	C2	TE3	C4	44.7°	90.0°
H22	C2	TE3	C4	64.8°	90.0°
TE3	C4	H41	H42	125.2°	90.0°
TE3	C4	H41	H43	125.2°	90.0°
TE3	C4	H42	H43	125.3°	90.0°
H41	C4	H42	H43	125.4°	90.0°

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PDB entries from 2026-02-04

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