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Summary Geometry Related PDB entries

MSF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5	C1	doub	0.00Å	1.22Å
O6	C1	sing	0.00Å	1.23Å
C1	C2	sing	0.00Å	1.48Å
C2	SE3	sing	0.00Å	1.87Å
C2	H21	sing	0.00Å	1.11Å
C2	H22	sing	0.00Å	1.12Å
SE3	C4	sing	0.00Å	1.93Å
C4	H41	sing	0.00Å	1.11Å
C4	H42	sing	0.00Å	1.11Å
C4	H43	sing	0.00Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O5	C1	O6	121.8°	90.0°
O5	C1	C2	119.0°	90.0°
O6	C1	C2	119.2°	90.0°
C1	C2	SE3	122.7°	90.0°
C1	C2	H21	107.5°	90.0°
C1	C2	H22	107.4°	90.0°
SE3	C2	H21	107.6°	90.0°
SE3	C2	H22	107.5°	90.0°
C2	SE3	C4	78.8°	90.0°
H21	C2	H22	102.3°	90.0°
SE3	C4	H41	78.8°	90.0°
SE3	C4	H42	125.1°	90.0°
SE3	C4	H43	125.0°	90.0°
H41	C4	H42	125.2°	90.0°
H41	C4	H43	125.2°	90.0°
H42	C4	H43	83.8°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5	C1	O6	C2	178.5°	90.0°
O5	C1	C2	SE3	155.3°	90.0°
O5	C1	C2	H21	29.9°	90.0°
O5	C1	C2	H22	79.5°	90.0°
O6	C1	C2	SE3	23.3°	90.0°
O6	C1	C2	H21	148.6°	90.0°
O6	C1	C2	H22	101.9°	90.0°
C1	C2	SE3	H21	125.3°	90.0°
C1	C2	SE3	H22	125.2°	90.0°
C1	C2	H21	H22	113.0°	90.0°
C1	C2	SE3	C4	176.3°	90.0°
SE3	C2	H21	H22	113.1°	90.0°
C2	SE3	C4	H41	180.0°	90.0°
C2	SE3	C4	H42	54.7°	90.0°
C2	SE3	C4	H43	54.7°	90.0°
H21	C2	SE3	C4	51.0°	90.0°
H22	C2	SE3	C4	58.5°	90.0°
SE3	C4	H41	H42	125.2°	90.0°
SE3	C4	H41	H43	125.2°	90.0°
SE3	C4	H42	H43	129.0°	90.0°
H41	C4	H42	H43	129.2°	90.0°

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PDB entries from 2026-02-04

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