Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

MRC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C6'C5'sing1.53Å1.52Å
C6'C7'sing1.53Å1.50Å
C8'C7'sing1.53Å1.52Å
C8'C9'sing1.53Å1.53Å
C5'C4'sing1.53Å1.53Å
C16C8sing1.53Å1.54Å
C16O5sing1.43Å1.46Å
C9'O1Asing1.45Å1.44Å
C3'C4'sing1.53Å1.53Å
C3'C2'sing1.53Å1.54Å
C8C9sing1.53Å1.54Å
C8C7sing1.53Å1.54Å
O5C5sing1.43Å1.44Å
O1AC1sing1.35Å1.44Å
C10C9sing1.53Å1.53Å
C10O10sing1.43Å1.45Å
C10C11sing1.53Å1.54Å
O1BC1doub1.22Å1.25Å
C1C2sing1.47Å1.39Å
O7C7sing1.43Å1.44Å
C2C3doub1.33Å1.37Å
O1QC1'doub1.21Å1.25Å
C5C4sing1.53Å1.54Å
C5C6sing1.53Å1.57Å
C7C6sing1.53Å1.54Å
C2'C1'sing1.51Å1.53Å
O10C11sing1.43Å1.48Å
C15C3sing1.51Å1.52Å
C3C4sing1.51Å1.52Å
C11C12sing1.53Å1.57Å
C1'O1Psing1.34Å1.24Å
C12C17sing1.53Å1.49Å
C12C13sing1.53Å1.53Å
C6O6sing1.43Å1.43Å
C14C13sing1.53Å1.55Å
C13O13sing1.43Å1.45Å
C2H171sing1.08Å1.08Å
C4H1sing1.09Å1.10Å
C4H172sing1.09Å1.10Å
C5H91sing1.09Å1.10Å
C6H2sing1.09Å1.10Å
C7H3sing1.09Å1.10Å
C8H4sing1.09Å1.10Å
C9H5sing1.09Å1.10Å
C9H92sing1.09Å1.10Å
C10H10sing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C12H12sing1.09Å1.10Å
C13H13sing1.09Å1.10Å
C14H141sing1.09Å1.10Å
C14H142sing1.09Å1.10Å
C14H143sing1.09Å1.10Å
C15H151sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
C15H153sing1.09Å1.10Å
C16H161sing1.09Å1.10Å
C16H162sing1.09Å1.10Å
O1PHOP1sing0.97Å0.95Å
C2'H2'1sing1.09Å1.10Å
C2'H2'2sing1.09Å1.10Å
C3'H3'1sing1.09Å1.10Å
C3'H3'2sing1.09Å1.10Å
C4'H4'1sing1.09Å1.10Å
C4'H4'2sing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C6'H6'1sing1.09Å1.10Å
C6'H6'2sing1.09Å1.10Å
C7'H7'1sing1.09Å1.10Å
C7'H7'2sing1.09Å1.10Å
C8'H8'1sing1.09Å1.10Å
C8'H8'2sing1.09Å1.10Å
C9'H9'1sing1.09Å1.10Å
C9'H9'2sing1.09Å1.10Å
O7HO7sing0.97Å0.95Å
O6HO6sing0.97Å0.95Å
C17H6sing1.09Å1.10Å
C17H7sing1.09Å1.10Å
C17H173sing1.09Å1.10Å
O13HO13sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5'C6'C7'105.8°109.5°
C6'C5'C4'119.7°109.5°
C6'C5'H5'1106.9°109.5°
C6'C5'H5'2106.8°109.5°
C5'C6'H6'1110.4°109.5°
C5'C6'H6'2110.4°109.5°
C6'C7'C8'109.7°109.5°
C7'C6'H6'1110.4°109.4°
C7'C6'H6'2110.4°109.4°
C6'C7'H7'1109.4°109.5°
C6'C7'H7'2109.4°109.5°
C7'C8'C9'108.2°109.5°
C8'C7'H7'1109.4°109.5°
C8'C7'H7'2109.4°109.4°
C7'C8'H8'1109.8°109.5°
C7'C8'H8'2109.8°109.5°
C8'C9'O1A108.8°109.5°
C9'C8'H8'1109.8°109.4°
C9'C8'H8'2109.8°109.4°
C8'C9'H9'1109.6°109.4°
C8'C9'H9'2109.6°109.5°
C5'C4'C3'109.7°109.5°
C5'C4'H4'1109.4°109.4°
C5'C4'H4'2109.4°109.5°
C4'C5'H5'1106.8°109.4°
C4'C5'H5'2106.9°109.5°
C8C16O5112.6°109.4°
C16C8C9112.2°109.5°
C16C8C7108.9°109.2°
C16C8H4108.3°109.6°
C8C16H161108.7°109.4°
C8C16H162108.7°109.5°
C16O5C5116.4°114.1°
O5C16H161108.7°109.5°
O5C16H162108.7°109.5°
C9'O1AC1124.2°117.0°
O1AC9'H9'1109.6°109.5°
O1AC9'H9'2109.6°109.5°
C4'C3'C2'110.4°109.5°
C4'C3'H3'1109.3°109.5°
C4'C3'H3'2109.3°109.5°
C3'C4'H4'1109.4°109.5°
C3'C4'H4'2109.4°109.5°
C3'C2'C1'119.2°109.5°
C3'C2'H2'1107.0°109.4°
C3'C2'H2'2107.0°109.4°
C2'C3'H3'1109.2°109.4°
C2'C3'H3'2109.2°109.5°
C9C8C7110.7°109.5°
C8C9C10114.0°109.4°
C9C8H4108.3°109.5°
C8C9H5108.3°109.5°
C8C9H92108.3°109.5°
C8C7O7108.8°109.6°
C8C7C6111.2°109.1°
C8C7H3108.8°109.6°
C7C8H4108.3°109.5°
O5C5C4110.7°109.4°
O5C5C6104.5°109.4°
O5C5H91111.6°109.5°
O1AC1O1B119.3°119.9°
O1AC1C2113.8°120.0°
C9C10O10117.8°117.8°
C9C10C11111.2°117.8°
C10C9H5108.3°109.5°
C10C9H92108.3°109.5°
C9C10H10117.8°115.8°
O10C10C1159.1°57.6°
C10O10C1163.5°64.7°
O10C10H10119.4°117.7°
C10C11O1057.4°57.7°
C10C11C12139.6°117.8°
C11C10H10117.5°117.8°
C10C11H11110.3°117.7°
O1BC1C2127.0°120.1°
C1C2C3131.2°120.0°
C1C2H171114.4°120.0°
O7C7C6108.9°109.5°
O7C7H3110.2°109.5°
C7O7HO7109.5°114.0°
C2C3C15125.2°120.0°
C2C3C4117.6°120.0°
C3C2H171114.4°120.0°
O1QC1'C2'116.5°120.0°
O1QC1'O1P123.3°120.0°
C4C5C6109.8°109.5°
C5C4C3116.1°109.5°
C5C4H1107.8°109.5°
C5C4H172107.8°109.5°
C4C5H91110.2°109.5°
C5C6C7110.2°109.2°
C5C6O6110.6°109.5°
C6C5H91109.8°109.5°
C5C6H2108.4°109.5°
C7C6O6108.7°109.5°
C7C6H2108.7°109.5°
C6C7H3108.8°109.6°
C2'C1'O1P120.2°120.0°
C1'C2'H2'1107.0°109.5°
C1'C2'H2'2107.0°109.5°
O10C11C12110.0°117.8°
O10C11H11111.2°117.8°
C15C3C4117.1°120.0°
C3C15H151109.5°109.5°
C3C15H152109.5°109.5°
C3C15H153109.5°109.5°
C3C4H1107.8°109.5°
C3C4H172107.8°109.5°
C11C12C17100.9°109.5°
C11C12C13122.6°109.5°
C12C11H11109.9°115.7°
C11C12H12111.2°109.5°
C1'O1PHOP1109.5°117.1°
C17C12C1396.2°109.5°
C17C12H12112.3°109.4°
C12C17H6109.5°109.4°
C12C17H7109.5°109.5°
C12C17H173109.5°109.4°
C12C13C14111.8°109.5°
C12C13O13107.7°109.5°
C13C12H12111.8°109.4°
C12C13H13108.9°109.4°
O6C6H2110.2°109.6°
C6O6HO6109.5°114.0°
C14C13O13109.9°109.5°
C14C13H13108.6°109.5°
C13C14H141109.5°109.5°
C13C14H142109.5°109.5°
C13C14H143109.5°109.4°
O13C13H13110.0°109.4°
C13O13HO13109.5°114.0°
H1C4H172109.5°109.4°
H5C9H92109.5°109.5°
H141C14H142109.5°109.5°
H141C14H143109.5°109.4°
H142C14H143109.5°109.5°
H151C15H152109.4°109.5°
H151C15H153109.5°109.4°
H152C15H153109.5°109.5°
H161C16H162109.5°109.5°
H2'1C2'H2'2109.5°109.5°
H3'1C3'H3'2109.5°109.4°
H4'1C4'H4'2109.5°109.4°
H5'1C5'H5'2109.5°109.4°
H6'1C6'H6'2109.5°109.4°
H7'1C7'H7'2109.4°109.4°
H8'1C8'H8'2109.5°109.5°
H9'1C9'H9'2109.5°109.5°
H6C17H7109.5°109.5°
H6C17H173109.5°109.5°
H7C17H173109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C5'C6'C7'H6'1119.4°120.0°
C5'C6'C7'H6'2119.4°120.1°
C5'C6'C7'C8'131.8°180.0°
C6'C5'C4'H5'1121.5°120.0°
C6'C5'C4'H5'2121.4°120.1°
C6'C5'C4'C3'158.7°180.0°
C6'C5'C4'H4'181.3°60.0°
C6'C5'C4'H4'238.7°59.9°
C6'C5'H5'1H5'2115.3°120.0°
C5'C6'H6'1H6'2121.7°120.1°
C5'C6'C7'H7'1108.1°60.0°
C5'C6'C7'H7'211.8°60.0°
C6'C7'C8'H7'1120.0°120.1°
C6'C7'C8'H7'2120.0°120.0°
C6'C7'C8'C9'180.0°180.0°
C7'C6'C5'C4'83.7°180.0°
C7'C6'C5'H5'1154.8°60.0°
C7'C6'C5'H5'237.7°60.0°
C7'C6'H6'1H6'2121.7°119.9°
C6'C7'H7'1H7'2119.9°120.0°
C6'C7'C8'H8'160.2°60.0°
C6'C7'C8'H8'260.1°60.0°
C7'C8'C9'H8'1119.8°120.0°
C7'C8'C9'H8'2119.8°120.0°
C7'C8'C9'O1A76.7°180.0°
C8'C7'C6'H6'112.4°60.0°
C8'C7'C6'H6'2108.7°60.0°
C8'C7'H7'1H7'2119.9°119.9°
C7'C8'H8'1H8'2120.5°120.0°
C7'C8'C9'H9'1163.4°60.0°
C7'C8'C9'H9'243.2°60.0°
C8'C9'O1AH9'1119.9°120.0°
C8'C9'O1AH9'2119.9°120.0°
C8'C9'O1AC1140.0°180.0°
C9'C8'C7'H7'159.9°59.9°
C9'C8'C7'H7'260.0°60.0°
C9'C8'H8'1H8'2120.6°119.9°
C8'C9'H9'1H9'2120.3°120.0°
C5'C4'C3'H4'1120.0°119.9°
C5'C4'C3'H4'2120.0°120.1°
C5'C4'C3'C2'139.2°180.0°
C5'C4'C3'H3'1100.7°60.1°
C5'C4'C3'H3'219.1°59.9°
C5'C4'H4'1H4'2119.9°119.9°
C4'C5'H5'1H5'2115.4°120.0°
C4'C5'C6'H6'1156.9°60.1°
C4'C5'C6'H6'235.7°59.9°
C8C16O5H161120.4°120.0°
C8C16O5H162120.5°120.0°
C16C8C9C7121.9°119.7°
C16C8C9H4119.5°120.2°
C16C8C7H4117.6°120.0°
C8C16O5C559.0°61.2°
C16C8C9C10136.3°65.3°
C16C8C7O769.0°62.9°
C16C8C7C651.0°56.9°
C16C8C7H3170.9°176.9°
C16C8C9H5103.1°174.7°
C16C8C9H9215.7°54.7°
C8C16H161H162118.6°120.0°
O5C16C8C973.7°62.3°
O5C16C8C749.2°57.6°
C16O5C5C4179.9°178.8°
C16O5C5C661.9°61.2°
C16O5C5H9156.7°58.8°
O5C16C8H4166.8°177.6°
O5C16H161H162118.6°120.1°
C9'O1AC1O1B0.3°0.2°
C9'O1AC1C2179.3°180.0°
O1AC9'C8'H8'143.1°60.0°
O1AC9'C8'H8'2163.5°60.0°
O1AC9'H9'1H9'2120.3°120.0°
C4'C3'C2'H3'1120.1°120.0°
C4'C3'C2'H3'2120.2°120.0°
C4'C3'C2'C1'110.4°179.9°
C4'C3'C2'H2'111.0°60.0°
C4'C3'C2'H2'2128.2°60.0°
C4'C3'H3'1H3'2119.6°120.0°
C3'C4'H4'1H4'2119.9°120.0°
C3'C4'C5'H5'137.2°60.0°
C3'C4'C5'H5'279.9°59.9°
C3'C2'C1'O1Q72.4°0.0°
C3'C2'C1'H2'1121.4°120.0°
C3'C2'C1'H2'2121.4°120.0°
C3'C2'C1'O1P107.7°180.0°
C3'C2'H2'1H2'2115.6°119.9°
C2'C3'H3'1H3'2119.5°120.0°
C2'C3'C4'H4'119.2°60.0°
C2'C3'C4'H4'2100.8°59.9°
C9C8C7H4118.6°120.1°
C8C9C10H5120.7°120.0°
C8C9C10H92120.7°120.0°
C8C9C10O10155.4°116.4°
C8C9C10C1190.1°177.6°
C9C8C7O7167.2°177.2°
C9C8C7C672.8°63.0°
C9C8C7H347.1°57.0°
C8C9H5H92118.0°120.0°
C8C9C10H1049.8°30.5°
C9C8C16H161165.8°177.7°
C9C8C16H16246.8°57.7°
C7C8C9C10101.8°175.0°
C8C7O7C6121.4°119.6°
C8C7O7H3119.3°120.2°
C8C7C6C558.8°56.9°
C8C7C6H3119.9°119.9°
C8C7C6O6179.8°176.8°
C8C7C6H259.8°63.0°
C7C8C9H518.9°55.0°
C7C8C9H92137.6°65.0°
C7C8C16H16171.3°62.4°
C7C8C16H162169.7°177.6°
C8C7O7HO7180.0°179.6°
O5C5C4C6114.9°119.9°
O5C5C4H91124.0°120.0°
O5C5C6H91119.8°120.0°
O5C5C6C760.4°57.6°
O5C5C4C378.2°65.1°
O5C5C6O6179.4°177.5°
O5C5C4H142.7°174.9°
O5C5C4H172160.8°55.0°
O5C5C6H258.4°62.3°
C5O5C16H16161.4°58.8°
C5O5C16H162179.5°178.9°
O1AC1O1BC2179.6°179.8°
O1AC1C2C3178.9°174.3°
O1AC1C2H1711.1°5.7°
C1O1AC9'H9'120.1°60.0°
C1O1AC9'H9'2100.1°60.0°
C9C10O10C1199.3°106.8°
C9C10O10H10154.5°146.3°
C9C10C11H10140.0°146.4°
C9C10C11C12166.7°146.3°
C10C9C8H416.8°54.9°
C10C9H5H92117.9°120.0°
C9C10C11H117.7°0.1°
O10C10C11H10109.5°106.8°
O10C10C11C1282.8°106.9°
O10C10C9H534.7°123.6°
O10C10C9H9284.0°3.6°
O10C10C11H11102.8°106.9°
C10C11C12H11174.4°146.9°
C10C11C12C17118.6°60.0°
C10C11C12C13136.7°180.0°
C11C10C9H530.5°57.6°
C11C10C9H92149.2°62.4°
C10C11C12H120.7°60.0°
O1BC1C2C30.7°6.0°
O1BC1C2H171179.3°174.1°
C1C2C3H171180.0°179.9°
C1C2C3C151.7°7.1°
C1C2C3C4173.6°172.9°
O7C7C6C561.1°63.0°
O7C7C6H3120.2°120.2°
O7C7C6O660.2°56.9°
O7C7C6H2179.8°177.1°
O7C7C8H448.7°57.1°
C2C3C4C5108.8°95.0°
C2C3C15C4175.4°180.0°
C2C3C4H112.2°145.0°
C2C3C4H172130.2°25.0°
C2C3C15H151180.0°84.4°
C2C3C15H15260.0°155.6°
C2C3C15H15360.0°35.6°
O1QC1'C2'O1P179.9°180.0°
O1QC1'O1PHOP10.0°0.0°
O1QC1'C2'H2'1166.2°120.0°
O1QC1'C2'H2'248.9°120.0°
C4C5C6H91121.4°120.0°
C4C5C6C7179.2°177.6°
C5C4C3C1575.5°85.0°
C5C4C3H1121.0°120.0°
C5C4C3H172121.0°120.1°
C4C5C6O660.6°62.5°
C5C4H1H172117.0°120.0°
C4C5C6H260.4°57.6°
C5C6C7O6121.3°119.9°
C5C6C7H2118.7°119.9°
C6C5C4C3166.9°175.0°
C5C6O6H2119.8°120.1°
C6C5C4H172.2°55.0°
C6C5C4H17245.9°64.9°
C5C6C7H3178.7°176.8°
C5C6O6HO6180.0°60.1°
C7C6O6H2119.0°120.2°
C7C6C5H9159.4°62.4°
C6C7C8H4168.6°176.9°
C6C7O7HO758.6°60.0°
C7C6O6HO658.9°179.8°
C2'C1'O1PHOP1179.8°180.0°
C1'C2'H2'1H2'2115.6°120.1°
C1'C2'C3'H3'1129.5°60.0°
C1'C2'C3'H3'29.7°60.0°
O10C11C12H11122.8°147.0°
O10C11C12C17178.6°126.0°
O10C11C12C1373.9°113.9°
O10C11C12H1262.1°6.1°
C15C3C2H171178.3°172.8°
C15C3C4H1163.6°35.0°
C15C3C4H17245.5°154.9°
C3C15H151H152120.0°120.1°
C3C15H151H153120.0°120.0°
C3C15H152H153120.0°120.0°
C4C3C2H1716.4°7.2°
C3C4H1H172117.0°120.0°
C3C4C5H9145.7°54.9°
C4C3C15H1514.6°95.6°
C4C3C15H152124.6°24.4°
C4C3C15H153115.4°144.4°
C11C12C17C13124.9°120.1°
C11C12C17H12118.5°120.0°
C11C12C13H12135.7°120.0°
C11C12C13C14162.6°180.0°
C11C12C13O1341.8°60.0°
C12C11C10H1026.7°0.1°
C11C12C13H1377.4°60.0°
C11C12C17H6180.0°60.0°
C11C12C17H760.0°180.0°
C11C12C17H17360.0°60.0°
O1PC1'C2'H2'113.7°60.0°
O1PC1'C2'H2'2130.9°60.1°
C17C12C13H12117.1°119.9°
C17C12C13C1490.2°60.0°
C17C12C13O13149.0°180.0°
C17C12C11H1155.8°87.0°
C17C12C13H1329.8°60.1°
C12C17H6H7120.0°120.0°
C12C17H6H173120.0°119.9°
C12C17H7H173120.0°120.0°
C12C13C14O13119.6°120.0°
C12C13C14H13120.1°120.0°
C12C13O13H13118.5°119.9°
C13C12C11H1148.8°33.1°
C12C13C14H141180.0°60.0°
C12C13C14H14260.0°60.0°
C12C13C14H14360.0°180.0°
C13C12C17H655.1°60.1°
C13C12C17H7175.1°60.0°
C13C12C17H17364.9°180.0°
C12C13O13HO13180.0°180.0°
O6C6C5H9160.8°57.5°
O6C6C7H359.9°63.2°
C14C13O13H13119.5°120.0°
C14C13C12H1226.9°60.0°
C13C14H141H142120.0°120.0°
C13C14H141H143120.0°119.9°
C13C14H142H143120.0°120.0°
C14C13O13HO1358.0°60.0°
O13C13C12H1294.0°60.1°
O13C13C14H14160.5°60.0°
O13C13C14H14259.5°180.0°
O13C13C14H143179.6°60.0°
H1C4C5H91166.7°65.0°
H172C4C5H9175.2°175.0°
H91C5C6H2178.3°177.7°
H2C6C7H360.1°57.0°
H2C6O6HO660.2°60.1°
H3C7C8H471.5°63.1°
H3C7O7HO760.7°60.2°
H4C8C9H5137.4°65.1°
H4C8C9H92103.8°174.9°
H4C8C16H16146.3°57.5°
H4C8C16H16272.7°62.5°
H5C9C10H10170.4°89.5°
H92C9C10H1070.9°150.5°
H10C10C11H11147.7°146.4°
H11C11C12H12175.2°153.1°
H12C12C13H13146.8°180.0°
H12C12C17H661.5°180.0°
H12C12C17H758.5°60.0°
H12C12C17H173178.5°60.0°
H13C13C14H14159.8°180.0°
H13C13C14H142179.9°60.0°
H13C13C14H14360.1°60.0°
H13C13O13HO1361.5°60.1°
H141C14H142H143120.0°120.0°
H151C15H152H153120.0°119.9°
H2'1C2'C3'H3'1109.2°180.0°
H2'1C2'C3'H3'2131.1°60.0°
H2'2C2'C3'H3'18.1°60.0°
H2'2C2'C3'H3'2111.6°180.0°
H3'1C3'C4'H4'1139.3°180.0°
H3'1C3'C4'H4'219.4°60.0°
H3'2C3'C4'H4'1100.9°60.0°
H3'2C3'C4'H4'2139.1°180.0°
H4'1C4'C5'H5'1157.3°NaN°
H4'1C4'C5'H5'240.2°60.1°
H4'2C4'C5'H5'182.8°60.1°
H4'2C4'C5'H5'2160.1°179.9°
H5'1C5'C6'H6'135.4°NaN°
H5'1C5'C6'H6'285.7°60.0°
H5'2C5'C6'H6'181.7°60.0°
H5'2C5'C6'H6'2157.2°180.0°
H6'1C6'C7'H7'1132.5°180.0°
H6'1C6'C7'H7'2107.6°60.0°
H6'2C6'C7'H7'111.3°60.1°
H6'2C6'C7'H7'2131.2°179.9°
H7'1C7'C8'H8'1179.7°179.9°
H7'1C7'C8'H8'259.9°60.0°
H7'2C7'C8'H8'159.8°60.0°
H7'2C7'C8'H8'2179.8°179.9°
H8'1C8'C9'H9'176.8°180.0°
H8'1C8'C9'H9'2163.0°60.0°
H8'2C8'C9'H9'143.6°60.0°
H8'2C8'C9'H9'276.6°180.0°
H6C17H7H173120.0°120.0°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon