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Summary Geometry Related PDB entries

MPJ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.46Å	1.49Å
N	H	sing	1.02Å	1.02Å
N	HN2	sing	1.02Å	1.02Å
CA	CB	sing	1.53Å	1.53Å
CA	P	sing	1.81Å	1.79Å
CA	HA	sing	1.10Å	1.11Å
CB	CG	sing	1.53Å	1.50Å
CB	HB1	sing	1.10Å	1.12Å
CB	HB2	sing	1.10Å	1.12Å
CG	SD	sing	1.82Å	1.80Å
CG	HG1	sing	1.09Å	1.11Å
CG	HG2	sing	1.09Å	1.11Å
SD	CE	sing	1.81Å	1.82Å
CE	HE1	sing	1.09Å	1.11Å
CE	HE2	sing	1.09Å	1.12Å
CE	HE3	sing	1.09Å	1.11Å
O1	P	doub	1.51Å	1.64Å
O2	P	sing	1.63Å	1.63Å
O2	HO2	sing	0.98Å	0.95Å
P	HP	sing	1.41Å	1.42Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H	113.5°	110.4°
CA	N	HN2	110.7°	109.6°
N	CA	CB	113.5°	113.5°
N	CA	P	114.7°	100.3°
N	CA	HA	102.3°	109.2°
H	N	HN2	110.8°	105.9°
CB	CA	P	108.5°	116.2°
CB	CA	HA	109.4°	108.9°
CA	CB	CG	113.4°	114.6°
CA	CB	HB1	110.7°	108.6°
CA	CB	HB2	110.7°	107.9°
P	CA	HA	108.0°	108.4°
CA	P	O1	108.8°	110.3°
CA	P	O2	109.1°	100.3°
CA	P	HP	110.8°	112.6°
CG	CB	HB1	110.8°	109.7°
CG	CB	HB2	110.8°	109.0°
CB	CG	SD	106.9°	110.5°
CB	CG	HG1	113.2°	111.0°
CB	CG	HG2	113.2°	111.4°
HB1	CB	HB2	99.5°	106.8°
SD	CG	HG1	113.2°	107.7°
SD	CG	HG2	113.2°	107.8°
CG	SD	CE	100.0°	98.3°
HG1	CG	HG2	97.3°	108.3°
SD	CE	HE1	100.0°	109.9°
SD	CE	HE2	115.8°	109.8°
SD	CE	HE3	115.8°	109.9°
HE1	CE	HE2	115.8°	109.0°
HE1	CE	HE3	115.9°	109.1°
HE2	CE	HE3	94.6°	109.1°
O1	P	O2	111.3°	109.7°
O1	P	HP	108.6°	119.8°
P	O2	HO2	109.1°	118.5°
O2	P	HP	108.2°	102.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H	HN2	125.2°	118.5°
N	CA	CB	P	128.8°	115.5°
N	CA	CB	HA	113.6°	121.8°
N	CA	P	HA	113.4°	114.3°
N	CA	CB	CG	67.9°	178.2°
N	CA	CB	HB1	57.4°	55.2°
N	CA	CB	HB2	166.8°	60.2°
N	CA	P	O1	47.2°	79.4°
N	CA	P	O2	74.4°	165.0°
N	CA	P	HP	166.5°	57.3°
H	N	CA	CB	180.0°	61.1°
H	N	CA	P	54.4°	63.6°
H	N	CA	HA	62.3°	177.2°
HN2	N	CA	CB	54.8°	55.1°
HN2	N	CA	P	179.7°	179.8°
HN2	N	CA	HA	63.0°	66.6°
CB	CA	P	HA	118.5°	123.0°
CA	CB	CG	HB1	125.3°	122.4°
CA	CB	CG	HB2	125.3°	121.0°
CA	CB	HB1	HB2	116.6°	116.1°
CA	CB	CG	SD	177.4°	179.5°
CA	CB	CG	HG1	52.1°	60.0°
CA	CB	CG	HG2	57.4°	60.8°
CB	CA	P	O1	175.4°	43.3°
CB	CA	P	O2	53.7°	72.3°
CB	CA	P	HP	65.4°	180.0°
P	CA	CB	CG	163.4°	62.7°
P	CA	CB	HB1	71.3°	60.3°
P	CA	CB	HB2	38.0°	175.7°
CA	P	O1	O2	120.3°	109.5°
CA	P	O1	HP	120.6°	133.2°
CA	P	O2	HP	120.6°	115.9°
CA	P	O2	HO2	180.0°	116.6°
HA	CA	CB	CG	45.7°	60.0°
HA	CA	CB	HB1	171.0°	177.0°
HA	CA	CB	HB2	79.6°	61.7°
HA	CA	P	O1	66.2°	166.3°
HA	CA	P	O2	172.2°	50.7°
HA	CA	P	HP	53.1°	57.0°
CG	CB	HB1	HB2	116.7°	118.0°
CB	CG	SD	HG1	125.3°	121.4°
CB	CG	SD	HG2	125.2°	121.9°
CB	CG	HG1	HG2	119.1°	122.6°
CB	CG	SD	CE	158.0°	178.6°
HB1	CB	CG	SD	57.4°	58.1°
HB1	CB	CG	HG1	177.4°	177.5°
HB1	CB	CG	HG2	67.9°	61.7°
HB2	CB	CG	SD	52.1°	58.5°
HB2	CB	CG	HG1	73.2°	61.0°
HB2	CB	CG	HG2	177.4°	178.2°
SD	CG	HG1	HG2	119.1°	116.3°
CG	SD	CE	HE1	180.0°	55.9°
CG	SD	CE	HE2	54.7°	64.1°
CG	SD	CE	HE3	54.7°	175.9°
HG1	CG	SD	CE	32.7°	60.0°
HG2	CG	SD	CE	76.8°	56.7°
SD	CE	HE1	HE2	125.2°	120.4°
SD	CE	HE1	HE3	125.3°	120.5°
SD	CE	HE2	HE3	121.6°	120.5°
HE1	CE	HE2	HE3	121.7°	119.1°
O1	P	O2	HP	119.3°	128.0°
O1	P	O2	HO2	59.9°	127.4°
HO2	O2	P	HP	59.4°	0.6°

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