Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

MOD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N2CAsing1.47Å1.48Å
N2HN21sing1.01Å1.02Å
N2HN22sing1.01Å1.02Å
CACBsing1.53Å1.54Å
CAC9sing1.53Å1.54Å
CAHAsing1.09Å1.11Å
CBCGsing1.53Å1.53Å
CBHB1sing1.09Å1.12Å
CBHB2sing1.09Å1.12Å
CGSDsing1.81Å1.79Å
CGHG1sing1.09Å1.12Å
CGHG2sing1.09Å1.11Å
SDCEsing1.81Å1.81Å
CEHE1sing1.09Å1.11Å
CEHE2sing1.09Å1.11Å
CEHE3sing1.09Å1.12Å
C9O1sing1.43Å1.37Å
C9H91sing1.09Å1.11Å
C9H92sing1.09Å1.11Å
O1P1sing1.61Å1.61Å
P1O1Ssing1.61Å1.44Å
P1O2Sdoub1.48Å1.45Å
P1O5'sing1.61Å1.58Å
O1SHOS1sing0.97Å0.95Å
O5'C5'sing1.43Å1.45Å
C5'C4'sing1.53Å1.54Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.44Å1.42Å
C4'C3'sing1.54Å1.54Å
C4'H4'sing1.09Å1.12Å
O4'C1'sing1.44Å1.42Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.55Å1.52Å
C3'H3'sing1.09Å1.11Å
O3'H2sing0.97Å0.95Å
C2'O2'sing1.43Å1.41Å
C2'C1'sing1.55Å1.53Å
C2'H1sing1.09Å1.11Å
O2'H2'sing0.97Å0.95Å
C1'N9sing1.46Å1.47Å
C1'H1'sing1.09Å1.12Å
N9C8sing1.38Å1.37Å
N9C4sing1.46Å1.37Å
C8N7doub1.30Å1.34Å
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.38Å
C5C6doub1.35Å1.39Å
C5C4sing1.53Å1.44Å
C6N6sing1.39Å1.34Å
C6N1sing1.42Å1.38Å
N6HN61sing0.97Å1.02Å
N6HN62sing0.97Å1.02Å
N1C2sing1.38Å1.38Å
N1HN1sing0.97Å1.02Å
C2N3doub1.31Å1.37Å
C2H3sing1.08Å1.10Å
N3C4sing1.46Å1.39Å
C4H4sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAN2HN21110.3°106.7°
CAN2HN22114.7°106.7°
N2CACB114.7°109.4°
N2CAC9110.0°109.5°
N2CAHA104.8°109.4°
HN21N2HN22110.3°106.7°
CBCAC9107.5°109.5°
CBCAHA107.4°109.5°
CACBCG116.3°109.4°
CACBHB1109.7°109.5°
CACBHB2109.7°109.5°
C9CAHA112.4°109.5°
CAC9O1112.6°109.4°
CAC9H91111.0°109.4°
CAC9H92111.0°109.5°
CGCBHB1109.7°109.4°
CGCBHB2109.7°109.5°
CBCGSD107.4°109.4°
CBCGHG1113.0°109.4°
CBCGHG2113.0°109.5°
HB1CBHB2100.5°109.5°
SDCGHG1112.9°109.5°
SDCGHG2113.0°109.5°
CGSDCE100.5°100.0°
HG1CGHG297.5°109.5°
SDCEHE1115.6°109.5°
SDCEHE2100.5°109.4°
SDCEHE3115.6°109.5°
HE1CEHE2115.6°109.5°
HE1CEHE394.8°109.5°
HE2CEHE3115.6°109.5°
O1C9H91111.0°109.5°
O1C9H92111.1°109.5°
C9O1P1118.2°106.8°
H91C9H9299.3°109.5°
O1P1O1S100.4°109.5°
O1P1O2S109.9°109.4°
O1P1O5'109.4°109.5°
O1SP1O2S115.8°109.4°
O1SP1O5'110.1°109.5°
P1O1SHOS1100.4°106.8°
O2SP1O5'110.7°109.5°
P1O5'C5'121.9°106.8°
O5'C5'C4'108.0°109.5°
O5'C5'H5'1112.7°109.5°
O5'C5'H5'2112.8°109.5°
C4'C5'H5'1112.7°109.5°
C4'C5'H5'2112.7°109.4°
C5'C4'O4'104.4°109.9°
C5'C4'C3'111.9°109.9°
C5'C4'H4'110.4°109.9°
H5'1C5'H5'297.7°109.5°
O4'C4'C3'106.7°107.4°
O4'C4'H4'115.3°109.9°
C4'O4'C1'109.3°107.0°
C3'C4'H4'108.2°109.9°
C4'C3'O3'107.9°110.8°
C4'C3'C2'103.9°104.1°
C4'C3'H3'115.5°110.5°
O4'C1'C2'103.6°103.5°
O4'C1'N9110.7°110.6°
O4'C1'H1'112.4°110.6°
O3'C3'C2'113.5°110.5°
O3'C3'H3'106.3°110.4°
C3'O3'H2107.9°106.8°
C2'C3'H3'110.1°110.5°
C3'C2'O2'113.2°110.9°
C3'C2'C1'103.4°102.1°
C3'C2'H1114.1°111.0°
O2'C2'C1'117.0°110.9°
O2'C2'H199.6°110.8°
C2'O2'H2'113.2°106.8°
C1'C2'H1110.0°110.8°
C2'C1'N9109.1°110.8°
C2'C1'H1'113.9°110.6°
N9C1'H1'107.2°110.5°
C1'N9C8130.2°127.2°
C1'N9C4124.1°127.2°
C8N9C4105.7°105.6°
N9C8N7113.8°112.6°
N9C8H8123.9°123.7°
N9C4C5106.9°101.7°
N9C4N3129.6°113.6°
N9C4H4111.4°111.9°
N7C8H8122.3°123.7°
C8N7C5105.0°111.4°
N7C5C6135.9°134.2°
N7C5C4108.6°105.8°
C6C5C4115.5°120.0°
C5C6N6120.7°124.0°
C5C6N1121.4°112.1°
C5C4N3123.6°106.5°
C5C4H4141.7°111.2°
N6C6N1117.9°124.0°
C6N6HN61108.2°120.0°
C6N6HN62120.7°120.0°
C6N1C2120.4°115.7°
C6N1HN1108.3°122.2°
HN61N6HN62108.2°120.0°
C2N1HN1108.3°122.1°
N1C2N3122.2°119.1°
N1C2H3119.2°120.4°
N3C2H3118.6°120.5°
C2N3C4116.8°117.1°
N3C4H418.2°111.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAN2HN21HN22127.8°113.8°
N2CACBC9122.6°120.0°
N2CACBHA116.1°120.0°
N2CAC9HA116.4°120.0°
N2CACBCG57.0°65.0°
N2CACBHB1177.7°175.0°
N2CACBHB268.2°55.0°
N2CAC9O123.0°65.0°
N2CAC9H91148.3°175.0°
N2CAC9H92102.2°55.0°
HN21N2CACB54.7°60.0°
HN21N2CAC9176.0°60.0°
HN21N2CAHA62.9°180.0°
HN22N2CACB180.0°53.8°
HN22N2CAC958.7°173.8°
HN22N2CAHA62.4°66.2°
CBCAC9HA118.0°120.1°
CACBCGHB1125.3°119.9°
CACBCGHB2125.2°120.0°
CACBHB1HB2115.5°120.1°
CACBCGSD179.7°180.0°
CACBCGHG155.0°60.1°
CACBCGHG254.4°60.0°
CBCAC9O1102.5°175.0°
CBCAC9H9122.7°55.0°
CBCAC9H92132.2°65.0°
C9CACBCG179.6°175.0°
C9CACBHB155.1°55.1°
C9CACBHB254.4°65.0°
CAC9O1H91125.2°120.0°
CAC9O1H92125.3°120.0°
CAC9H91H92116.9°120.0°
CAC9O1P1179.2°180.0°
HACACBCG59.1°54.9°
HACACBHB166.1°65.0°
HACACBHB2175.6°174.9°
HACAC9O1139.4°55.0°
HACAC9H9195.3°65.0°
HACAC9H9214.2°175.0°
CGCBHB1HB2115.5°120.0°
CBCGSDHG1125.3°120.0°
CBCGSDHG2125.3°120.0°
CBCGHG1HG2118.9°120.0°
CBCGSDCE179.9°180.0°
HB1CBCGSD54.5°60.0°
HB1CBCGHG1179.7°180.0°
HB1CBCGHG270.8°60.0°
HB2CBCGSD55.0°60.0°
HB2CBCGHG170.2°60.0°
HB2CBCGHG2179.7°180.0°
SDCGHG1HG2118.9°120.0°
CGSDCEHE154.8°60.0°
CGSDCEHE2180.0°180.0°
CGSDCEHE354.7°60.0°
HG1CGSDCE54.9°60.1°
HG2CGSDCE54.6°60.0°
SDCEHE1HE2117.0°119.9°
SDCEHE1HE3121.5°120.0°
SDCEHE2HE3125.2°120.0°
HE1CEHE2HE3109.5°120.1°
O1C9H91H92116.9°120.1°
C9O1P1O1S179.3°65.0°
C9O1P1O2S56.7°55.0°
C9O1P1O5'65.0°175.0°
H91C9O1P153.9°60.0°
H92C9O1P155.6°60.0°
O1P1O1SO2S118.3°120.0°
O1P1O1SO5'115.2°120.0°
O1P1O2SO5'120.9°120.0°
O1P1O1SHOS1180.0°60.0°
O1P1O5'C5'58.5°175.0°
O1SP1O2SO5'126.2°120.0°
O1SP1O5'C5'50.9°65.0°
O2SP1O1SHOS161.7°179.9°
O2SP1O5'C5'179.8°55.0°
O5'P1O1SHOS164.8°60.0°
P1O5'C5'C4'179.0°180.0°
P1O5'C5'H5'155.7°60.0°
P1O5'C5'H5'253.8°60.0°
O5'C5'C4'H5'1125.3°120.0°
O5'C5'C4'H5'2125.3°119.9°
O5'C5'H5'1H5'2118.7°120.0°
O5'C5'C4'O4'67.4°66.7°
O5'C5'C4'C3'47.7°175.3°
O5'C5'C4'H4'168.2°54.3°
C4'C5'H5'1H5'2118.7°120.0°
C5'C4'O4'C3'118.6°119.5°
C5'C4'O4'H4'121.2°121.1°
C5'C4'C3'H4'121.8°121.0°
C5'C4'O4'C1'139.6°145.9°
C5'C4'C3'O3'128.1°119.9°
C5'C4'C3'C2'111.2°121.4°
C5'C4'C3'H3'9.4°2.8°
H5'1C5'C4'O4'57.9°53.3°
H5'1C5'C4'C3'172.9°64.7°
H5'1C5'C4'H4'66.6°174.3°
H5'2C5'C4'O4'167.3°173.3°
H5'2C5'C4'C3'77.6°55.4°
H5'2C5'C4'H4'42.9°65.6°
O4'C4'C3'H4'124.6°119.5°
O4'C4'C3'O3'118.3°120.7°
O4'C4'C3'C2'2.4°1.9°
O4'C4'C3'H3'123.1°116.7°
C4'O4'C1'C2'35.3°40.0°
C4'O4'C1'N9152.0°158.7°
C4'O4'C1'H1'88.1°78.4°
C3'C4'O4'C1'20.9°26.4°
C4'C3'O3'C2'114.5°114.8°
C4'C3'O3'H3'124.4°122.7°
C4'C3'C2'H3'124.2°118.6°
C4'C3'O3'H2180.0°176.2°
C4'C3'C2'O2'150.0°139.2°
C4'C3'C2'C1'22.4°21.0°
C4'C3'C2'H197.1°97.2°
H4'C4'O4'C1'99.2°93.1°
H4'C4'C3'O3'6.3°1.2°
H4'C4'C3'C2'127.0°117.6°
H4'C4'C3'H3'112.4°123.8°
O4'C1'C2'C3'35.2°37.1°
O4'C1'C2'O2'160.4°155.2°
O4'C1'C2'N9117.9°118.6°
O4'C1'C2'H1'122.4°118.5°
O4'C1'C2'H187.0°81.3°
O4'C1'N9H1'122.9°122.9°
O4'C1'N9C849.0°53.6°
O4'C1'N9C4131.6°126.7°
O3'C3'C2'H3'118.9°122.4°
O3'C3'C2'O2'33.1°20.2°
O3'C3'C2'C1'94.4°98.0°
O3'C3'C2'H1146.1°143.8°
C2'C3'O3'H265.5°61.4°
C3'C2'O2'C1'120.1°112.7°
C3'C2'O2'H1121.5°123.8°
C3'C2'C1'H1122.2°118.3°
C3'C2'O2'H2'180.0°67.4°
C3'C2'C1'N9153.1°155.7°
C3'C2'C1'H1'87.2°81.4°
H3'C3'O3'H255.6°61.1°
H3'C3'C2'O2'85.8°102.2°
H3'C3'C2'C1'146.6°139.6°
H3'C3'C2'H127.1°21.4°
O2'C2'C1'H1112.6°123.5°
O2'C2'C1'N981.7°86.2°
O2'C2'C1'H1'38.0°36.8°
C1'C2'O2'H2'59.9°179.9°
C2'C1'N9H1'123.8°123.0°
C2'C1'N9C864.3°60.5°
C2'C1'N9C4115.1°119.1°
H1C2'O2'H2'58.5°56.4°
H1C2'C1'N930.9°37.4°
H1C2'C1'H1'150.6°160.3°
C1'N9C8C4179.5°179.7°
C1'N9C8N7179.3°170.9°
C1'N9C8H80.6°9.2°
C1'N9C4C5179.3°164.7°
C1'N9C4N30.6°50.7°
C1'N9C4H40.7°76.5°
H1'C1'N9C8171.9°176.5°
H1'C1'N9C48.7°3.9°
N9C8N7H8180.0°179.9°
N9C8N7C50.0°2.8°
C8N9C4C50.2°15.0°
C8N9C4N3179.9°129.0°
C8N9C4H4179.8°103.8°
C4N9C8N70.1°8.8°
C4N9C8H8179.9°171.1°
N9C4C5N70.2°16.8°
N9C4C5C6179.7°162.3°
N9C4C5N3180.0°119.2°
N9C4C5H4180.0°119.3°
N9C4N3C2179.9°151.3°
N9C4N3H40.1°127.4°
C8N7C5C6179.7°166.2°
C8N7C5C40.1°12.6°
H8C8N7C5180.0°177.3°
N7C5C6C4179.8°178.7°
N7C5C6N60.2°5.7°
N7C5C6N1179.8°174.3°
N7C5C4N3179.9°136.0°
N7C5C4H4179.8°102.5°
C5C6N6N1180.0°180.0°
C5C6N6HN6154.8°0.0°
C5C6N6HN62180.0°179.9°
C5C6N1C20.2°39.9°
C5C6N1HN1125.5°140.1°
C6C5C4N30.3°43.0°
C6C5C4H40.3°78.5°
C4C5C6N6179.6°175.6°
C4C5C6N10.3°4.4°
C5C4N3C20.1°40.2°
C5C4N3H4179.9°121.4°
C6N6HN61HN62132.3°180.0°
N6C6N1C2179.7°140.1°
N6C6N1HN154.5°39.9°
N1C6N6HN61125.2°180.0°
N1C6N6HN620.0°0.0°
C6N1C2HN1125.3°180.0°
C6N1C2N30.0°44.3°
C6N1C2H3179.9°135.8°
N1C2N3H3180.0°179.9°
N1C2N3C40.0°0.5°
HN1N1C2N3125.3°135.7°
HN1N1C2H354.7°44.2°
C2N3C4H4180.0°81.2°
H3C2N3C4180.0°179.4°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon