MNU
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP2 | sing | 1.62Å | 1.50Å | |
P | OP1 | doub | 1.50Å | 1.49Å | |
P | O5' | sing | 1.62Å | 1.59Å | |
P | OP3 | sing | 1.62Å | 228.16Å | |
OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
O5' | C5' | sing | 1.42Å | 1.44Å | |
C5' | C4' | sing | 1.52Å | 1.50Å | |
C5' | H5' | sing | 1.09Å | 1.12Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C3' | sing | 1.52Å | 1.51Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C1' | N1 | sing | 1.43Å | 1.47Å | |
C1' | C2' | sing | 1.52Å | 1.53Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N1 | C6 | sing | 1.39Å | 1.38Å | |
N1 | C2 | sing | 1.41Å | 1.38Å | |
C6 | C5 | doub | 1.34Å | 1.33Å | |
C6 | H6 | sing | 1.09Å | 1.10Å | |
C2 | O2 | doub | 1.23Å | 1.21Å | |
C2 | N3 | sing | 1.40Å | 1.37Å | |
N3 | C4 | sing | 1.39Å | 1.38Å | |
N3 | HN3 | sing | 1.02Å | 1.02Å | |
C4 | O4 | doub | 1.23Å | 1.24Å | |
C4 | C5 | sing | 1.49Å | 1.43Å | |
C5 | C7 | sing | 1.50Å | 1.52Å | |
C7 | N8 | sing | 1.44Å | 1.48Å | |
C7 | H71 | sing | 1.09Å | 1.11Å | |
C7 | H72 | sing | 1.09Å | 1.11Å | |
N8 | C9 | sing | 1.46Å | 1.48Å | |
N8 | HN8 | sing | 1.03Å | 1.02Å | |
C9 | H91 | sing | 1.09Å | 1.12Å | |
C9 | H92 | sing | 1.09Å | 1.12Å | |
C9 | H93 | sing | 1.09Å | 1.11Å | |
C2' | O2' | sing | 1.41Å | 1.41Å | |
C2' | C3' | sing | 1.51Å | 1.52Å | |
C2' | H2' | sing | 1.10Å | 1.11Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C3' | O3' | sing | 1.43Å | 1.41Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP2 | P | OP1 | 119.8° | 115.3° |
OP2 | P | O5' | 106.6° | 103.8° |
OP2 | P | OP3 | 120.4° | 103.3° |
P | OP2 | HOP2 | 119.7° | 119.0° |
OP1 | P | O5' | 108.4° | 115.0° |
OP1 | P | OP3 | 106.2° | 114.9° |
O5' | P | OP3 | 17.4° | 102.9° |
P | O5' | C5' | 121.3° | 118.5° |
P | OP3 | HOP3 | 120.4° | 119.0° |
O5' | C5' | C4' | 109.3° | 108.6° |
O5' | C5' | H5' | 112.2° | 109.2° |
O5' | C5' | H5'' | 112.3° | 109.3° |
C4' | C5' | H5' | 112.2° | 110.1° |
C4' | C5' | H5'' | 112.3° | 110.1° |
C5' | C4' | O4' | 109.0° | 108.2° |
C5' | C4' | C3' | 112.6° | 113.3° |
C5' | C4' | H4' | 106.3° | 109.3° |
H5' | C5' | H5'' | 98.2° | 109.6° |
O4' | C4' | C3' | 104.9° | 105.9° |
O4' | C4' | H4' | 113.8° | 107.7° |
C4' | O4' | C1' | 109.9° | 109.2° |
C3' | C4' | H4' | 110.3° | 112.2° |
C4' | C3' | C2' | 103.3° | 102.1° |
C4' | C3' | O3' | 109.6° | 107.9° |
C4' | C3' | H3' | 114.6° | 114.5° |
O4' | C1' | N1 | 108.2° | 109.0° |
O4' | C1' | C2' | 107.7° | 106.5° |
O4' | C1' | H1' | 113.9° | 108.9° |
N1 | C1' | C2' | 115.8° | 112.5° |
N1 | C1' | H1' | 105.5° | 107.3° |
C1' | N1 | C6 | 120.9° | 118.5° |
C1' | N1 | C2 | 118.5° | 121.3° |
C2' | C1' | H1' | 106.0° | 112.6° |
C1' | C2' | O2' | 109.5° | 112.6° |
C1' | C2' | C3' | 101.5° | 102.0° |
C1' | C2' | H2' | 115.3° | 111.1° |
C6 | N1 | C2 | 120.6° | 120.2° |
N1 | C6 | C5 | 123.0° | 124.5° |
N1 | C6 | H6 | 120.2° | 114.7° |
N1 | C2 | O2 | 122.9° | 123.8° |
N1 | C2 | N3 | 115.2° | 115.1° |
C5 | C6 | H6 | 116.8° | 120.7° |
C6 | C5 | C4 | 119.7° | 118.4° |
C6 | C5 | C7 | 119.7° | 123.6° |
O2 | C2 | N3 | 121.9° | 121.1° |
C2 | N3 | C4 | 127.1° | 127.0° |
C2 | N3 | HN3 | 116.0° | 116.4° |
C4 | N3 | HN3 | 116.9° | 116.6° |
N3 | C4 | O4 | 119.4° | 123.6° |
N3 | C4 | C5 | 114.5° | 114.8° |
O4 | C4 | C5 | 126.1° | 121.6° |
C4 | C5 | C7 | 120.6° | 118.0° |
C5 | C7 | N8 | 110.2° | 107.5° |
C5 | C7 | H71 | 111.9° | 108.8° |
C5 | C7 | H72 | 112.0° | 108.8° |
N8 | C7 | H71 | 111.9° | 110.8° |
N8 | C7 | H72 | 111.9° | 110.7° |
C7 | N8 | C9 | 114.0° | 111.7° |
C7 | N8 | HN8 | 110.6° | 110.3° |
H71 | C7 | H72 | 98.5° | 110.1° |
C9 | N8 | HN8 | 110.5° | 108.2° |
N8 | C9 | H91 | 110.5° | 110.1° |
N8 | C9 | H92 | 114.0° | 110.2° |
N8 | C9 | H93 | 110.6° | 110.2° |
H91 | C9 | H92 | 110.6° | 108.7° |
H91 | C9 | H93 | 99.8° | 108.8° |
H92 | C9 | H93 | 110.6° | 108.7° |
O2' | C2' | C3' | 111.8° | 112.3° |
O2' | C2' | H2' | 105.7° | 108.6° |
C2' | O2' | HO2' | 109.5° | 107.2° |
C3' | C2' | H2' | 113.1° | 110.1° |
C2' | C3' | O3' | 112.9° | 110.3° |
C2' | C3' | H3' | 111.4° | 114.0° |
O3' | C3' | H3' | 105.3° | 107.8° |
C3' | O3' | HO3' | 109.6° | 106.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP2 | P | OP1 | O5' | 122.5° | 120.7° |
OP2 | P | OP1 | OP3 | 140.6° | 120.0° |
OP2 | P | O5' | OP3 | 144.2° | 107.4° |
OP2 | P | O5' | C5' | 61.9° | 53.2° |
OP2 | P | OP3 | HOP3 | 180.0° | 78.5° |
OP1 | P | O5' | OP3 | 85.6° | 125.8° |
OP1 | P | OP2 | HOP2 | 180.0° | 48.7° |
OP1 | P | O5' | C5' | 68.3° | 179.9° |
OP1 | P | OP3 | HOP3 | 39.7° | 48.0° |
O5' | P | OP2 | HOP2 | 56.7° | 175.4° |
P | O5' | C5' | C4' | 163.7° | 180.0° |
P | O5' | C5' | H5' | 38.4° | 59.9° |
P | O5' | C5' | H5'' | 71.0° | 59.9° |
O5' | P | OP3 | HOP3 | 139.5° | 173.8° |
OP3 | P | OP2 | HOP2 | 45.0° | 77.5° |
OP3 | P | O5' | C5' | 153.9° | 54.2° |
O5' | C5' | C4' | H5' | 125.2° | 119.5° |
O5' | C5' | C4' | H5'' | 125.3° | 119.6° |
O5' | C5' | H5' | H5'' | 118.2° | 119.6° |
O5' | C5' | C4' | O4' | 67.4° | 62.4° |
O5' | C5' | C4' | C3' | 48.6° | 179.5° |
O5' | C5' | C4' | H4' | 169.5° | 54.6° |
C4' | C5' | H5' | H5'' | 118.2° | 121.2° |
C5' | C4' | O4' | C3' | 120.8° | 121.7° |
C5' | C4' | O4' | H4' | 118.5° | 118.1° |
C5' | C4' | C3' | H4' | 118.6° | 124.4° |
C5' | C4' | O4' | C1' | 138.8° | 109.0° |
C5' | C4' | C3' | C2' | 151.3° | 86.9° |
C5' | C4' | C3' | O3' | 88.1° | 156.8° |
C5' | C4' | C3' | H3' | 30.0° | 36.8° |
H5' | C5' | C4' | O4' | 57.8° | 57.1° |
H5' | C5' | C4' | C3' | 173.8° | 60.0° |
H5' | C5' | C4' | H4' | 65.3° | 174.1° |
H5'' | C5' | C4' | O4' | 167.3° | 178.0° |
H5'' | C5' | C4' | C3' | 76.7° | 60.9° |
H5'' | C5' | C4' | H4' | 44.2° | 65.0° |
O4' | C4' | C3' | H4' | 123.0° | 117.2° |
C4' | O4' | C1' | N1 | 121.5° | 132.9° |
C4' | O4' | C1' | C2' | 4.3° | 11.3° |
C4' | O4' | C1' | H1' | 121.6° | 110.3° |
O4' | C4' | C3' | C2' | 32.9° | 31.5° |
O4' | C4' | C3' | O3' | 153.5° | 84.7° |
O4' | C4' | C3' | H3' | 88.4° | 155.2° |
C3' | C4' | O4' | C1' | 17.9° | 12.8° |
C4' | C3' | C2' | C1' | 34.2° | 37.1° |
C4' | C3' | C2' | O2' | 82.4° | 158.0° |
C4' | C3' | C2' | O3' | 118.3° | 114.5° |
C4' | C3' | C2' | H3' | 123.5° | 124.0° |
C4' | C3' | C2' | H2' | 158.4° | 80.9° |
C4' | C3' | O3' | H3' | 123.7° | 124.2° |
C4' | C3' | O3' | HO3' | 180.0° | 47.4° |
H4' | C4' | O4' | C1' | 102.8° | 133.0° |
H4' | C4' | C3' | C2' | 90.1° | 148.7° |
H4' | C4' | C3' | O3' | 30.5° | 32.5° |
H4' | C4' | C3' | H3' | 148.6° | 87.6° |
O4' | C1' | N1 | C2' | 120.9° | 117.9° |
O4' | C1' | N1 | H1' | 122.3° | 117.7° |
O4' | C1' | C2' | H1' | 122.3° | 119.3° |
O4' | C1' | N1 | C6 | 4.3° | 32.3° |
O4' | C1' | N1 | C2 | 176.1° | 147.8° |
O4' | C1' | C2' | O2' | 93.9° | 151.3° |
O4' | C1' | C2' | C3' | 24.4° | 30.7° |
O4' | C1' | C2' | H2' | 147.1° | 86.6° |
N1 | C1' | C2' | H1' | 116.5° | 121.4° |
C1' | N1 | C6 | C2 | 179.6° | 179.9° |
C1' | N1 | C6 | C5 | 179.5° | 180.0° |
C1' | N1 | C6 | H6 | 0.5° | 0.0° |
C1' | N1 | C2 | O2 | 1.0° | 0.1° |
C1' | N1 | C2 | N3 | 179.4° | 180.0° |
N1 | C1' | C2' | O2' | 144.9° | 89.4° |
N1 | C1' | C2' | C3' | 96.8° | 150.0° |
N1 | C1' | C2' | H2' | 25.9° | 32.7° |
C2' | C1' | N1 | C6 | 125.2° | 85.6° |
C2' | C1' | N1 | C2 | 55.1° | 94.3° |
C1' | C2' | O2' | C3' | 111.7° | 114.5° |
C1' | C2' | O2' | H2' | 124.8° | 123.5° |
C1' | C2' | C3' | H2' | 124.2° | 118.0° |
C1' | C2' | O2' | HO2' | 180.0° | 35.3° |
C1' | C2' | C3' | O3' | 152.5° | 77.4° |
C1' | C2' | C3' | H3' | 89.2° | 161.1° |
H1' | C1' | N1 | C6 | 118.0° | 150.0° |
H1' | C1' | N1 | C2 | 61.7° | 30.1° |
H1' | C1' | C2' | O2' | 28.4° | 32.1° |
H1' | C1' | C2' | C3' | 146.7° | 88.5° |
H1' | C1' | C2' | H2' | 90.6° | 154.2° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
C6 | N1 | C2 | O2 | 179.3° | 180.0° |
C6 | N1 | C2 | N3 | 0.3° | 0.0° |
N1 | C6 | C5 | C4 | 0.1° | 0.0° |
N1 | C6 | C5 | C7 | 180.0° | 180.0° |
C2 | N1 | C6 | C5 | 0.1° | 0.0° |
C2 | N1 | C6 | H6 | 179.9° | 180.0° |
N1 | C2 | O2 | N3 | 179.6° | 179.9° |
N1 | C2 | N3 | C4 | 0.3° | 0.0° |
N1 | C2 | N3 | HN3 | 179.7° | 179.9° |
C6 | C5 | C4 | N3 | 0.1° | 0.0° |
C6 | C5 | C4 | O4 | 179.9° | 180.0° |
C6 | C5 | C4 | C7 | 179.9° | 180.0° |
C6 | C5 | C7 | N8 | 63.8° | 90.0° |
C6 | C5 | C7 | H71 | 61.5° | 30.0° |
C6 | C5 | C7 | H72 | 171.0° | 150.0° |
H6 | C6 | C5 | C4 | 179.9° | 180.0° |
H6 | C6 | C5 | C7 | 0.0° | 0.0° |
O2 | C2 | N3 | C4 | 179.3° | 179.9° |
O2 | C2 | N3 | HN3 | 0.7° | 0.0° |
C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
C2 | N3 | C4 | O4 | 179.7° | 179.9° |
C2 | N3 | C4 | C5 | 0.1° | 0.1° |
N3 | C4 | O4 | C5 | 179.8° | 180.0° |
N3 | C4 | C5 | C7 | 180.0° | 180.0° |
HN3 | N3 | C4 | O4 | 0.3° | 0.0° |
HN3 | N3 | C4 | C5 | 179.9° | 180.0° |
O4 | C4 | C5 | C7 | 0.2° | 0.0° |
C4 | C5 | C7 | N8 | 116.3° | 90.0° |
C4 | C5 | C7 | H71 | 118.4° | 150.0° |
C4 | C5 | C7 | H72 | 8.9° | 30.0° |
C5 | C7 | N8 | H71 | 125.2° | 118.8° |
C5 | C7 | N8 | H72 | 125.3° | 118.8° |
C5 | C7 | H71 | H72 | 117.9° | 119.2° |
C5 | C7 | N8 | C9 | 179.9° | 179.6° |
C5 | C7 | N8 | HN8 | 54.7° | 60.0° |
N8 | C7 | H71 | H72 | 117.8° | 122.8° |
C7 | N8 | C9 | HN8 | 125.2° | 121.6° |
C7 | N8 | C9 | H91 | 54.8° | 163.1° |
C7 | N8 | C9 | H92 | 180.0° | 43.1° |
C7 | N8 | C9 | H93 | 54.7° | 76.9° |
H71 | C7 | N8 | C9 | 54.9° | 61.6° |
H71 | C7 | N8 | HN8 | 179.9° | 58.8° |
H72 | C7 | N8 | C9 | 54.6° | 60.8° |
H72 | C7 | N8 | HN8 | 70.6° | 178.8° |
N8 | C9 | H91 | H92 | 127.1° | 120.9° |
N8 | C9 | H91 | H93 | 116.4° | 120.9° |
N8 | C9 | H92 | H93 | 125.3° | 120.9° |
HN8 | N8 | C9 | H91 | 180.0° | 41.4° |
HN8 | N8 | C9 | H92 | 54.8° | 78.6° |
HN8 | N8 | C9 | H93 | 70.5° | 161.5° |
H91 | C9 | H92 | H93 | 109.5° | 118.3° |
O2' | C2' | C3' | H2' | 119.2° | 121.1° |
O2' | C2' | C3' | O3' | 35.9° | 43.5° |
O2' | C2' | C3' | H3' | 154.1° | 78.0° |
C3' | C2' | O2' | HO2' | 68.3° | 79.2° |
C2' | C3' | O3' | H3' | 121.7° | 125.1° |
C2' | C3' | O3' | HO3' | 65.5° | 158.1° |
H2' | C2' | O2' | HO2' | 55.2° | 158.8° |
H2' | C2' | C3' | O3' | 83.3° | 164.6° |
H2' | C2' | C3' | H3' | 34.9° | 43.1° |
H3' | C3' | O3' | HO3' | 56.3° | 76.8° |