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MNP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.51Å1.53Å
C1O1doub1.21Å1.22Å
C1O2sing1.34Å1.21Å
C2C1'sing1.51Å1.49Å
C2H21sing1.09Å1.12Å
C2H22sing1.09Å1.11Å
C1'C2'doub1.38Å1.37ÅAromatic
C1'C6'sing1.39Å1.39ÅAromatic
C2'C3'sing1.41Å1.37ÅAromatic
C2'H2'sing1.08Å1.10Å
C3'N3'sing1.34Å1.41Å
C3'C4'doub1.40Å1.38ÅAromatic
N3'O3'sing1.22Å1.41Å
N3'O4'doub1.22Å1.39Å
C4'C5'sing1.38Å1.36ÅAromatic
C4'H4'sing1.08Å1.10Å
C5'C6'doub1.38Å1.40ÅAromatic
C5'H5'sing1.08Å1.10Å
C6'H6'sing1.08Å1.10Å
O2HO2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O1115.8°120.0°
C2C1O2131.2°120.0°
C1C2C1'116.1°109.5°
C1C2H21109.8°109.4°
C1C2H22109.8°109.5°
O1C1O2112.8°120.0°
C1O2HO2131.3°120.0°
C1'C2H21109.7°109.5°
C1'C2H22109.8°109.5°
C2C1'C2'115.2°119.9°
C2C1'C6'124.9°119.9°
H21C2H22100.4°109.5°
C2'C1'C6'119.9°120.2°
C1'C2'C3'115.3°119.8°
C1'C2'H2'122.5°120.1°
C1'C6'C5'121.8°120.5°
C1'C6'H6'118.8°119.8°
C3'C2'H2'122.1°120.1°
C2'C3'N3'119.5°120.3°
C2'C3'C4'127.6°119.5°
N3'C3'C4'112.9°120.2°
C3'N3'O3'101.9°120.0°
C3'N3'O4'129.5°120.0°
C3'C4'C5'116.0°119.8°
C3'C4'H4'122.8°120.1°
O3'N3'O4'128.6°120.0°
C5'C4'H4'121.3°120.1°
C4'C5'C6'119.3°120.2°
C4'C5'H5'118.9°119.9°
C6'C5'H5'121.8°119.9°
C5'C6'H6'119.4°119.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O1O2175.9°180.0°
C1C2C1'H21125.3°119.9°
C1C2C1'H22125.3°120.1°
C1C2H21H22115.6°120.0°
C1C2C1'C2'70.5°90.3°
C1C2C1'C6'110.3°89.9°
C2C1O2HO2180.0°180.0°
O1C1C2C1'140.6°0.0°
O1C1C2H2194.2°120.0°
O1C1C2H2215.3°120.0°
O1C1O2HO24.9°0.0°
O2C1C2C1'34.3°180.0°
O2C1C2H2190.9°60.0°
O2C1C2H22159.6°60.0°
C1'C2H21H22115.6°120.0°
C2C1'C2'C6'179.3°179.7°
C2C1'C2'C3'179.4°179.8°
C2C1'C2'H2'0.5°0.3°
C2C1'C6'C5'177.7°179.9°
C2C1'C6'H6'2.2°0.0°
H21C2C1'C2'54.8°149.7°
H21C2C1'C6'124.5°30.0°
H22C2C1'C2'164.3°29.7°
H22C2C1'C6'15.0°150.0°
C1'C2'C3'H2'180.0°179.5°
C1'C2'C3'N3'177.6°179.8°
C1'C2'C3'C4'0.5°0.6°
C2'C1'C6'C5'1.5°0.2°
C2'C1'C6'H6'178.5°179.7°
C6'C1'C2'C3'0.1°0.5°
C6'C1'C2'H2'179.8°180.0°
C1'C6'C5'C4'2.8°0.0°
C1'C6'C5'H6'180.0°179.9°
C1'C6'C5'H5'177.2°180.0°
C2'C3'N3'C4'177.5°179.6°
C2'C3'N3'O3'178.6°179.7°
C2'C3'N3'O4'2.5°0.4°
C2'C3'C4'C5'0.8°0.4°
C2'C3'C4'H4'179.3°179.8°
H2'C2'C3'N3'2.3°0.3°
H2'C2'C3'C4'179.5°179.9°
C3'N3'O3'O4'178.9°179.9°
N3'C3'C4'C5'176.5°180.0°
N3'C3'C4'H4'3.4°0.2°
C4'C3'N3'O3'1.1°0.1°
C4'C3'N3'O4'180.0°180.0°
C3'C4'C5'H4'180.0°179.8°
C3'C4'C5'C6'2.3°0.0°
C3'C4'C5'H5'177.7°179.9°
C4'C5'C6'H5'180.0°180.0°
C4'C5'C6'H6'177.2°180.0°
H4'C4'C5'C6'177.7°179.9°
H4'C4'C5'H5'2.3°0.1°
H5'C5'C6'H6'2.8°0.1°

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PDB entries from 2024-09-11

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