MMX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP1	P	doub	1.48Å	1.51Å
P	OP2	sing	1.61Å	1.51Å
P	O5'	sing	1.61Å	1.60Å
C5'	O5'	sing	1.43Å	1.42Å
C5'	C4'	sing	1.53Å	1.51Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.54Å	1.52Å
O4'	C1'	sing	1.44Å	1.42Å
O3'	C3'	sing	1.43Å	1.42Å
C3'	C2'	sing	1.55Å	1.52Å
O2	C2	doub	1.22Å	1.18Å
C1'	C2'	sing	1.55Å	1.53Å
C1'	N1	sing	1.46Å	1.48Å
O2'	C2'	sing	1.43Å	1.42Å
C2	N1	sing	1.34Å	1.49Å
C2	N3	sing	1.34Å	1.48Å
C32	C31	sing	1.53Å	1.53Å
C31	N3	sing	1.46Å	1.46Å
N1	C6	sing	1.46Å	1.45Å
N3	C4	sing	1.46Å	1.54Å
C6	C5	sing	1.53Å	1.48Å
C4	C5	sing	1.53Å	1.48Å
C4	N4	sing	1.47Å	1.46Å
P	OP3	sing	1.61Å	1.61Å
C1'	H1	sing	1.09Å	1.10Å
C2'	H2	sing	1.09Å	1.10Å
C3'	H3	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.10Å
C4'	H5	sing	1.09Å	1.10Å
C5	H6	sing	1.09Å	1.10Å
C5	H7	sing	1.09Å	1.10Å
C5'	H8	sing	1.09Å	1.10Å
C5'	H9	sing	1.09Å	1.10Å
C6	H10	sing	1.09Å	1.10Å
C6	H11	sing	1.09Å	1.10Å
N4	H12	sing	1.01Å	1.00Å
N4	H13	sing	1.01Å	1.00Å
O2'	H15	sing	0.97Å	0.95Å
O3'	H16	sing	0.97Å	0.95Å
OP2	H17	sing	0.97Å	0.95Å
C31	H18	sing	1.09Å	1.10Å
C31	H19	sing	1.09Å	1.10Å
C32	H20	sing	1.09Å	1.10Å
C32	H21	sing	1.09Å	1.10Å
C32	H22	sing	1.09Å	1.10Å
OP3	H23	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP2	119.5°	109.5°
OP1	P	O5'	107.7°	109.5°
OP1	P	OP3	107.3°	109.5°
OP2	P	O5'	108.7°	109.4°
OP2	P	OP3	108.5°	109.5°
P	OP2	H17	109.5°	114.0°
P	O5'	C5'	120.1°	123.0°
O5'	P	OP3	104.1°	109.5°
O5'	C5'	C4'	113.0°	109.4°
O5'	C5'	H8	108.6°	109.5°
O5'	C5'	H9	108.6°	109.5°
C5'	C4'	O4'	110.3°	109.9°
C5'	C4'	C3'	118.2°	109.9°
C5'	C4'	H5	108.2°	110.0°
C4'	C5'	H8	108.5°	109.5°
C4'	C5'	H9	108.6°	109.4°
O4'	C4'	C3'	102.7°	107.3°
C4'	O4'	C1'	109.1°	107.0°
O4'	C4'	H5	109.0°	109.8°
C4'	C3'	O3'	114.6°	110.6°
C4'	C3'	C2'	101.3°	104.2°
C4'	C3'	H3	108.6°	110.5°
C3'	C4'	H5	108.1°	109.9°
O4'	C1'	C2'	107.4°	103.5°
O4'	C1'	N1	110.6°	110.6°
O4'	C1'	H1	110.2°	110.7°
O3'	C3'	C2'	113.5°	110.5°
O3'	C3'	H3	109.9°	110.4°
C3'	O3'	H16	109.5°	114.0°
C3'	C2'	C1'	101.0°	102.1°
C3'	C2'	O2'	110.6°	111.0°
C3'	C2'	H2	111.6°	110.9°
C2'	C3'	H3	108.5°	110.5°
O2	C2	N1	120.0°	118.7°
O2	C2	N3	117.5°	118.7°
C2'	C1'	N1	110.8°	110.6°
C1'	C2'	O2'	108.4°	110.9°
C2'	C1'	H1	108.7°	110.7°
C1'	C2'	H2	111.4°	110.9°
C1'	N1	C2	124.9°	119.4°
C1'	N1	C6	116.1°	119.3°
N1	C1'	H1	109.2°	110.6°
O2'	C2'	H2	113.2°	110.8°
C2'	O2'	H15	109.5°	114.0°
N1	C2	N3	122.5°	122.6°
C2	N1	C6	118.9°	121.3°
C2	N3	C31	121.5°	119.3°
C2	N3	C4	114.1°	121.3°
C32	C31	N3	114.8°	109.5°
C32	C31	H18	108.1°	109.5°
C32	C31	H19	108.1°	109.5°
C31	C32	H20	109.5°	109.5°
C31	C32	H21	109.5°	109.5°
C31	C32	H22	109.5°	109.4°
C31	N3	C4	124.3°	119.4°
N3	C31	H18	108.1°	109.4°
N3	C31	H19	108.1°	109.5°
N1	C6	C5	114.9°	109.2°
N1	C6	H10	108.1°	109.5°
N1	C6	H11	108.1°	109.6°
N3	C4	C5	115.4°	109.2°
N3	C4	N4	112.8°	109.5°
N3	C4	H4	105.5°	109.5°
C6	C5	C4	113.8°	108.5°
C6	C5	H6	108.4°	109.6°
C6	C5	H7	108.4°	109.8°
C5	C6	H10	108.1°	109.5°
C5	C6	H11	108.1°	109.5°
C5	C4	N4	109.9°	109.5°
C5	C4	H4	106.1°	109.5°
C4	C5	H6	108.4°	109.7°
C4	C5	H7	108.4°	109.6°
N4	C4	H4	106.4°	109.5°
C4	N4	H12	109.5°	111.0°
C4	N4	H13	109.4°	111.0°
P	OP3	H23	109.5°	113.9°
H6	C5	H7	109.5°	109.7°
H8	C5'	H9	109.5°	109.5°
H10	C6	H11	109.5°	109.5°
H12	N4	H13	109.5°	111.0°
H18	C31	H19	109.5°	109.5°
H20	C32	H21	109.5°	109.5°
H20	C32	H22	109.4°	109.5°
H21	C32	H22	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP2	O5'	124.1°	120.0°
OP1	P	OP2	OP3	123.3°	120.0°
OP1	P	O5'	OP3	113.7°	120.1°
OP1	P	O5'	C5'	64.1°	54.9°
OP1	P	OP2	H17	0.0°	179.9°
OP1	P	OP3	H23	0.0°	60.0°
OP2	P	O5'	OP3	115.4°	120.0°
OP2	P	O5'	C5'	165.0°	65.0°
OP2	P	OP3	H23	130.4°	60.0°
P	O5'	C5'	C4'	161.4°	180.0°
P	O5'	C5'	H8	40.9°	60.0°
P	O5'	C5'	H9	78.0°	60.1°
O5'	P	OP2	H17	124.1°	59.9°
O5'	P	OP3	H23	114.0°	180.0°
O5'	C5'	C4'	H8	120.5°	120.0°
O5'	C5'	C4'	H9	120.5°	120.0°
O5'	C5'	C4'	O4'	103.0°	66.4°
O5'	C5'	C4'	C3'	14.7°	175.7°
C5'	O5'	P	OP3	49.6°	175.0°
O5'	C5'	C4'	H5	137.9°	54.6°
O5'	C5'	H8	H9	118.4°	120.1°
C5'	C4'	O4'	C3'	126.8°	119.5°
C5'	C4'	O4'	H5	118.7°	121.1°
C5'	C4'	C3'	H5	123.2°	121.1°
C5'	C4'	O4'	C1'	154.7°	145.9°
C5'	C4'	C3'	O3'	74.0°	119.8°
C5'	C4'	C3'	C2'	163.3°	121.5°
C5'	C4'	C3'	H3	49.2°	2.8°
C4'	C5'	H8	H9	118.4°	119.9°
O4'	C4'	C3'	H5	115.1°	119.4°
O4'	C4'	C3'	O3'	164.3°	120.7°
O4'	C4'	C3'	C2'	41.7°	2.0°
C4'	O4'	C1'	C2'	2.6°	40.0°
C4'	O4'	C1'	N1	123.5°	158.5°
C4'	O4'	C1'	H1	115.6°	78.6°
O4'	C4'	C3'	H3	72.4°	116.7°
O4'	C4'	C5'	H8	136.5°	173.6°
O4'	C4'	C5'	H9	17.5°	53.6°
C3'	C4'	O4'	C1'	27.9°	26.5°
C4'	C3'	O3'	C2'	115.7°	114.8°
C4'	C3'	O3'	H3	122.6°	122.6°
C4'	C3'	C2'	H3	114.2°	118.7°
C4'	C3'	C2'	C1'	39.2°	20.9°
C4'	C3'	C2'	O2'	75.4°	139.1°
C4'	C3'	C2'	H2	157.7°	97.3°
C3'	C4'	C5'	H8	105.8°	55.7°
C3'	C4'	C5'	H9	135.2°	64.3°
C4'	C3'	O3'	H16	180.0°	176.3°
O4'	C1'	C2'	C3'	23.6°	37.0°
O4'	C1'	C2'	N1	120.9°	118.5°
O4'	C1'	C2'	H1	119.1°	118.6°
O4'	C1'	N1	H1	121.4°	123.0°
O4'	C1'	C2'	O2'	92.7°	155.2°
O4'	C1'	N1	C2	25.4°	49.1°
O4'	C1'	N1	C6	156.1°	131.0°
O4'	C1'	C2'	H2	142.1°	81.2°
C1'	O4'	C4'	H5	86.6°	93.0°
O3'	C3'	C2'	H3	122.5°	122.5°
O3'	C3'	C2'	C1'	162.6°	98.0°
O3'	C3'	C2'	O2'	48.0°	20.2°
O3'	C3'	C2'	H2	79.0°	143.9°
O3'	C3'	C4'	H5	49.2°	1.3°
C3'	C2'	C1'	O2'	116.3°	118.2°
C3'	C2'	C1'	H2	118.6°	118.2°
C3'	C2'	C1'	N1	97.3°	155.5°
C3'	C2'	O2'	H2	126.0°	123.7°
C3'	C2'	C1'	H1	142.7°	81.6°
C2'	C3'	C4'	H5	73.4°	117.4°
C3'	C2'	O2'	H15	180.0°	67.3°
C2'	C3'	O3'	H16	64.3°	61.4°
O2	C2	N1	C1'	1.1°	1.0°
O2	C2	N1	N3	179.0°	179.6°
O2	C2	N3	C31	2.0°	0.9°
O2	C2	N1	C6	179.7°	179.2°
O2	C2	N3	C4	178.6°	179.1°
C2'	C1'	N1	H1	119.7°	123.0°
C1'	C2'	O2'	H2	124.1°	123.6°
C2'	C1'	N1	C2	93.6°	64.9°
C2'	C1'	N1	C6	85.0°	115.0°
C1'	C2'	C3'	H3	75.0°	139.6°
C1'	C2'	O2'	H15	70.1°	180.0°
N1	C1'	C2'	O2'	146.4°	86.3°
C1'	N1	C2	C6	178.5°	179.9°
C1'	N1	C2	N3	179.9°	179.4°
C1'	N1	C6	C5	156.9°	150.9°
N1	C1'	C2'	H2	21.3°	37.3°
C1'	N1	C6	H10	82.3°	89.2°
C1'	N1	C6	H11	36.1°	30.9°
O2'	C2'	C1'	H1	26.4°	36.6°
O2'	C2'	C3'	H3	170.5°	102.2°
N1	C2	N3	C31	179.0°	179.5°
N1	C2	N3	C4	2.4°	0.5°
C2	N1	C6	C5	24.5°	29.0°
C2	N1	C1'	H1	146.8°	172.1°
C2	N1	C6	H10	96.3°	90.9°
C2	N1	C6	H11	145.3°	149.0°
C2	N3	C31	C32	114.3°	90.0°
C2	N3	C31	C4	176.3°	180.0°
N3	C2	N1	C6	1.4°	0.5°
C2	N3	C4	C5	26.8°	29.1°
C2	N3	C4	N4	154.3°	90.9°
C2	N3	C4	H4	90.0°	149.0°
C2	N3	C31	H18	125.0°	150.0°
C2	N3	C31	H19	6.5°	30.1°
C32	C31	N3	H18	120.8°	119.9°
C32	C31	N3	H19	120.8°	120.1°
C32	C31	N3	C4	69.5°	90.0°
C32	C31	H18	H19	117.6°	120.1°
C31	C32	H20	H21	120.0°	120.0°
C31	C32	H20	H22	120.0°	119.9°
C31	C32	H21	H22	120.0°	120.0°
C31	N3	C4	C5	156.7°	150.9°
C31	N3	C4	N4	29.2°	89.1°
C31	N3	C4	H4	86.5°	31.0°
N3	C31	H18	H19	117.5°	120.0°
N3	C31	C32	H20	180.0°	60.1°
N3	C31	C32	H21	60.0°	60.0°
N3	C31	C32	H22	60.0°	180.0°
N1	C6	C5	H10	120.8°	119.9°
N1	C6	C5	H11	120.8°	120.0°
N1	C6	C5	C4	49.2°	55.4°
C6	N1	C1'	H1	34.7°	8.0°
N1	C6	C5	H6	169.9°	175.2°
N1	C6	C5	H7	71.4°	64.3°
N1	C6	H10	H11	117.5°	120.2°
N3	C4	C5	C6	50.8°	55.5°
N3	C4	C5	N4	128.9°	120.0°
N3	C4	C5	H4	116.5°	119.9°
N3	C4	N4	H4	115.2°	120.2°
N3	C4	C5	H6	171.5°	175.2°
N3	C4	C5	H7	69.8°	64.4°
N3	C4	N4	H12	180.0°	60.3°
N3	C4	N4	H13	60.0°	175.8°
C4	N3	C31	H18	51.3°	30.0°
C4	N3	C31	H19	169.7°	149.9°
C6	C5	C4	H6	120.6°	119.7°
C6	C5	C4	H7	120.6°	119.9°
C6	C5	C4	N4	179.7°	64.5°
C6	C5	C4	H4	65.7°	175.4°
C6	C5	H6	H7	118.0°	120.6°
C5	C6	H10	H11	117.5°	120.1°
C5	C4	N4	H4	114.4°	120.1°
C4	C5	H6	H7	118.0°	120.4°
C4	C5	C6	H10	71.6°	64.4°
C4	C5	C6	H11	170.0°	175.4°
C5	C4	N4	H12	49.6°	180.0°
C5	C4	N4	H13	70.4°	56.0°
N4	C4	C5	H6	59.6°	55.2°
N4	C4	C5	H7	59.1°	175.7°
C4	N4	H12	H13	120.0°	123.9°
OP3	P	OP2	H17	123.3°	60.0°
H1	C1'	C2'	H2	98.7°	160.2°
H2	C2'	C3'	H3	43.5°	21.4°
H2	C2'	O2'	H15	54.0°	56.4°
H3	C3'	C4'	H5	172.5°	123.9°
H3	C3'	O3'	H16	57.5°	61.1°
H4	C4	C5	H6	55.0°	64.9°
H4	C4	C5	H7	173.7°	55.6°
H4	C4	N4	H12	64.8°	59.9°
H4	C4	N4	H13	175.2°	64.1°
H5	C4'	C5'	H8	17.3°	65.4°
H5	C4'	C5'	H9	101.6°	174.6°
H6	C5	C6	H10	49.1°	55.3°
H6	C5	C6	H11	69.3°	64.8°
H7	C5	C6	H10	167.8°	175.8°
H7	C5	C6	H11	49.4°	55.7°
H18	C31	C32	H20	59.2°	180.0°
H18	C31	C32	H21	60.8°	60.0°
H18	C31	C32	H22	179.2°	60.0°
H19	C31	C32	H20	59.2°	60.0°
H19	C31	C32	H21	179.3°	180.0°
H19	C31	C32	H22	60.8°	60.0°
H20	C32	H21	H22	120.0°	120.0°

Release date:	2022-06-01
Definition date:	2022-03-17
Last modified:	2022-05-27
Release status:	REL
Processing site:	RCSB
Derived from:	7UCJ