Obsolete: MLB
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3' | C3' | sing | 1.43Å | 1.44Å | |
O2' | C2' | sing | 1.43Å | 1.44Å | |
C2' | C3' | sing | 1.53Å | 1.55Å | |
C2' | C1' | sing | 1.53Å | 1.60Å | |
C3' | C4' | sing | 1.53Å | 1.54Å | |
C1' | O1' | sing | 1.43Å | 1.44Å | |
C1' | O5' | sing | 1.43Å | 1.48Å | |
C4' | O4' | sing | 1.43Å | 1.43Å | |
C4' | C5' | sing | 1.53Å | 1.53Å | |
O6 | C6 | sing | 1.43Å | 1.43Å | |
O5' | C5' | sing | 1.43Å | 1.48Å | |
C5' | C6' | sing | 1.53Å | 1.54Å | |
C6' | O1 | sing | 1.43Å | 1.42Å | |
C6 | C5 | sing | 1.53Å | 1.53Å | |
O5 | C5 | sing | 1.43Å | 1.46Å | |
O5 | C1 | sing | 1.43Å | 1.45Å | |
C5 | C4 | sing | 1.53Å | 1.55Å | |
O1 | C1 | sing | 1.43Å | 1.43Å | |
C1 | C2 | sing | 1.53Å | 1.58Å | |
C4 | O4 | sing | 1.43Å | 1.45Å | |
C4 | C3 | sing | 1.53Å | 1.51Å | |
C2 | C3 | sing | 1.53Å | 1.55Å | |
C2 | O2 | sing | 1.43Å | 1.43Å | |
C3 | O3 | sing | 1.43Å | 1.43Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
O2 | HO2 | sing | 0.97Å | 0.95Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
C5 | H5 | sing | 1.09Å | 1.10Å | |
C6 | H6A | sing | 1.09Å | 1.10Å | |
C6 | H6 | sing | 1.09Å | 1.10Å | |
O6 | HO6 | sing | 0.97Å | 0.95Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
O1' | HO1' | sing | 0.97Å | 0.95Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | HO4' | sing | 0.97Å | 0.95Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C6' | H6' | sing | 1.09Å | 1.10Å | |
C6' | H6'A | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O3' | C3' | C2' | 106.6° | 109.5° |
O3' | C3' | C4' | 108.0° | 109.5° |
O3' | C3' | H3' | 111.4° | 109.7° |
C3' | O3' | HO3' | 109.5° | 113.9° |
O2' | C2' | C3' | 110.0° | 109.5° |
O2' | C2' | C1' | 113.0° | 109.5° |
O2' | C2' | H2' | 107.7° | 109.6° |
C2' | O2' | HO2' | 109.5° | 114.0° |
C3' | C2' | C1' | 113.6° | 109.2° |
C2' | C3' | C4' | 111.0° | 109.0° |
C3' | C2' | H2' | 106.4° | 109.5° |
C2' | C3' | H3' | 109.8° | 109.6° |
C2' | C1' | O1' | 113.3° | 109.4° |
C2' | C1' | O5' | 114.9° | 109.4° |
C2' | C1' | H1' | 105.4° | 109.5° |
C1' | C2' | H2' | 105.8° | 109.5° |
C3' | C4' | O4' | 110.7° | 109.5° |
C3' | C4' | C5' | 111.3° | 109.2° |
C4' | C3' | H3' | 110.0° | 109.5° |
C3' | C4' | H4' | 108.5° | 109.5° |
O1' | C1' | O5' | 108.9° | 109.5° |
O1' | C1' | H1' | 107.2° | 109.5° |
C1' | O1' | HO1' | 109.5° | 114.0° |
C1' | O5' | C5' | 122.1° | 114.1° |
O5' | C1' | H1' | 106.6° | 109.5° |
O4' | C4' | C5' | 107.8° | 109.5° |
O4' | C4' | H4' | 109.9° | 109.5° |
C4' | O4' | HO4' | 109.5° | 113.9° |
C4' | C5' | O5' | 114.5° | 109.4° |
C4' | C5' | C6' | 108.6° | 109.5° |
C5' | C4' | H4' | 108.6° | 109.6° |
C4' | C5' | H5' | 106.6° | 109.5° |
O6 | C6 | C5 | 110.0° | 109.5° |
O6 | C6 | H6A | 109.4° | 109.5° |
O6 | C6 | H6 | 109.3° | 109.5° |
C6 | O6 | HO6 | 109.5° | 114.0° |
O5' | C5' | C6' | 113.1° | 109.5° |
O5' | C5' | H5' | 107.1° | 109.5° |
C5' | C6' | O1 | 107.3° | 109.5° |
C6' | C5' | H5' | 106.5° | 109.5° |
C5' | C6' | H6' | 110.0° | 109.5° |
C5' | C6' | H6'A | 110.0° | 109.5° |
C6' | O1 | C1 | 112.4° | 114.0° |
O1 | C6' | H6' | 110.0° | 109.5° |
O1 | C6' | H6'A | 110.0° | 109.4° |
C6 | C5 | O5 | 111.6° | 109.5° |
C6 | C5 | C4 | 109.7° | 109.5° |
C6 | C5 | H5 | 108.8° | 109.5° |
C5 | C6 | H6A | 109.3° | 109.5° |
C5 | C6 | H6 | 109.4° | 109.5° |
C5 | O5 | C1 | 113.5° | 114.1° |
O5 | C5 | C4 | 108.3° | 109.4° |
O5 | C5 | H5 | 109.8° | 109.5° |
O5 | C1 | O1 | 110.9° | 109.5° |
O5 | C1 | C2 | 110.0° | 109.4° |
O5 | C1 | H1 | 108.8° | 109.4° |
C5 | C4 | O4 | 109.9° | 109.5° |
C5 | C4 | C3 | 110.5° | 109.2° |
C5 | C4 | H4 | 108.9° | 109.6° |
C4 | C5 | H5 | 108.6° | 109.5° |
O1 | C1 | C2 | 110.8° | 109.5° |
O1 | C1 | H1 | 109.1° | 109.5° |
C1 | C2 | C3 | 109.1° | 109.2° |
C1 | C2 | O2 | 108.2° | 109.5° |
C2 | C1 | H1 | 107.2° | 109.5° |
C1 | C2 | H2 | 109.6° | 109.5° |
O4 | C4 | C3 | 108.0° | 109.5° |
O4 | C4 | H4 | 110.2° | 109.5° |
C4 | O4 | HO4 | 109.5° | 114.0° |
C4 | C3 | C2 | 113.1° | 109.1° |
C4 | C3 | O3 | 108.2° | 109.5° |
C4 | C3 | H3 | 108.0° | 109.6° |
C3 | C4 | H4 | 109.4° | 109.5° |
C3 | C2 | O2 | 108.1° | 109.6° |
C2 | C3 | O3 | 111.0° | 109.6° |
C3 | C2 | H2 | 109.9° | 109.5° |
C2 | C3 | H3 | 107.5° | 109.5° |
O2 | C2 | H2 | 111.8° | 109.5° |
C2 | O2 | HO2 | 109.5° | 114.1° |
O3 | C3 | H3 | 109.0° | 109.5° |
C3 | O3 | HO3 | 109.5° | 114.0° |
H6A | C6 | H6 | 109.4° | 109.5° |
H6' | C6' | H6'A | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3' | C3' | C2' | O2' | 74.1° | 63.3° |
O3' | C3' | C2' | C4' | 117.4° | 119.8° |
O3' | C3' | C2' | H3' | 120.8° | 120.3° |
O3' | C3' | C2' | C1' | 158.2° | 176.8° |
O3' | C3' | C4' | H3' | 121.7° | 120.3° |
O3' | C3' | C4' | O4' | 60.3° | 63.3° |
O3' | C3' | C4' | C5' | 179.8° | 176.8° |
O3' | C3' | C2' | H2' | 42.2° | 56.9° |
O3' | C3' | C4' | H4' | 60.4° | 56.9° |
O2' | C2' | C3' | C1' | 127.7° | 119.9° |
O2' | C2' | C3' | H2' | 116.3° | 120.2° |
O2' | C2' | C1' | H2' | 117.6° | 120.2° |
O2' | C2' | C3' | C4' | 168.5° | 176.9° |
O2' | C2' | C1' | O1' | 4.9° | 57.5° |
O2' | C2' | C1' | O5' | 121.1° | 177.5° |
O2' | C2' | C1' | H1' | 121.8° | 62.5° |
O2' | C2' | C3' | H3' | 46.7° | 57.1° |
C3' | C2' | C1' | H2' | 116.3° | 119.9° |
C2' | C3' | C4' | H3' | 121.7° | 119.9° |
C3' | C2' | C1' | O1' | 131.1° | 62.4° |
C3' | C2' | C1' | O5' | 5.0° | 57.6° |
C2' | C3' | C4' | O4' | 176.8° | 176.9° |
C2' | C3' | C4' | C5' | 63.3° | 57.0° |
C3' | C2' | C1' | H1' | 112.1° | 177.6° |
C3' | C2' | O2' | HO2' | 180.0° | 180.0° |
C2' | C3' | O3' | HO3' | 180.0° | 60.0° |
C2' | C3' | C4' | H4' | 56.1° | 63.0° |
C1' | C2' | C3' | C4' | 40.9° | 57.0° |
C2' | C1' | O1' | O5' | 129.2° | 119.9° |
C2' | C1' | O1' | H1' | 115.8° | 120.0° |
C2' | C1' | O5' | H1' | 116.4° | 120.0° |
C2' | C1' | O5' | C5' | 33.2° | 61.2° |
C2' | C1' | O1' | HO1' | 180.0° | 179.9° |
C1' | C2' | O2' | HO2' | 52.0° | 60.3° |
C1' | C2' | C3' | H3' | 80.9° | 62.9° |
C3' | C4' | O4' | C5' | 122.0° | 119.7° |
C3' | C4' | O4' | H4' | 119.8° | 120.2° |
C3' | C4' | C5' | H4' | 119.4° | 119.9° |
C3' | C4' | C5' | O5' | 36.9° | 57.6° |
C3' | C4' | C5' | C6' | 164.3° | 177.6° |
C4' | C3' | C2' | H2' | 75.1° | 62.9° |
C4' | C3' | O3' | HO3' | 60.7° | 179.6° |
C3' | C4' | O4' | HO4' | 180.0° | 60.0° |
C3' | C4' | C5' | H5' | 81.4° | 62.4° |
O1' | C1' | O5' | H1' | 115.3° | 120.1° |
O1' | C1' | O5' | C5' | 161.4° | 58.8° |
O1' | C1' | C2' | H2' | 112.6° | 177.7° |
C1' | O5' | C5' | C4' | 11.6° | 61.2° |
C1' | O5' | C5' | C6' | 113.4° | 178.8° |
O5' | C1' | O1' | HO1' | 50.7° | 60.0° |
O5' | C1' | C2' | H2' | 121.3° | 62.3° |
C1' | O5' | C5' | H5' | 129.5° | 58.8° |
O4' | C4' | C5' | H4' | 119.0° | 120.1° |
O4' | C4' | C5' | O5' | 158.5° | 177.5° |
O4' | C4' | C5' | C6' | 74.1° | 62.5° |
O4' | C4' | C3' | H3' | 61.5° | 57.0° |
O4' | C4' | C5' | H5' | 40.2° | 57.5° |
C4' | C5' | O5' | C6' | 125.1° | 120.0° |
C4' | C5' | O5' | H5' | 117.9° | 120.0° |
C4' | C5' | C6' | H5' | 114.4° | 120.1° |
C4' | C5' | C6' | O1 | 166.5° | 175.0° |
C5' | C4' | C3' | H3' | 58.4° | 62.9° |
C5' | C4' | O4' | HO4' | 58.1° | 179.7° |
C4' | C5' | C6' | H6' | 46.8° | 65.0° |
C4' | C5' | C6' | H6'A | 73.8° | 55.1° |
O6 | C6 | C5 | H6A | 120.1° | 120.0° |
O6 | C6 | C5 | H6 | 120.1° | 120.0° |
O6 | C6 | C5 | O5 | 59.6° | 65.1° |
O6 | C6 | C5 | C4 | 179.6° | 175.0° |
O6 | C6 | C5 | H5 | 61.7° | 55.0° |
O6 | C6 | H6A | H6 | 119.7° | 120.0° |
O5' | C5' | C6' | H5' | 117.4° | 120.0° |
O5' | C5' | C6' | O1 | 65.3° | 65.1° |
C5' | O5' | C1' | H1' | 83.2° | 178.8° |
O5' | C5' | C4' | H4' | 82.5° | 62.3° |
O5' | C5' | C6' | H6' | 175.0° | 54.9° |
O5' | C5' | C6' | H6'A | 54.3° | 175.0° |
C5' | C6' | O1 | H6' | 119.7° | 120.0° |
C5' | C6' | O1 | H6'A | 119.6° | 120.0° |
C5' | C6' | O1 | C1 | 173.6° | 180.0° |
C6' | C5' | C4' | H4' | 44.9° | 57.6° |
C5' | C6' | H6' | H6'A | 121.0° | 120.0° |
C6' | O1 | C1 | O5 | 74.5° | 70.0° |
C6' | O1 | C1 | C2 | 163.1° | 170.0° |
C6' | O1 | C1 | H1 | 45.3° | 49.9° |
O1 | C6' | C5' | H5' | 52.1° | 54.9° |
O1 | C6' | H6' | H6'A | 121.0° | 120.0° |
C6 | C5 | O5 | C4 | 120.8° | 120.0° |
C6 | C5 | O5 | H5 | 120.7° | 120.1° |
C6 | C5 | O5 | C1 | 175.3° | 178.9° |
C6 | C5 | C4 | H5 | 118.9° | 120.0° |
C6 | C5 | C4 | O4 | 60.3° | 57.7° |
C6 | C5 | C4 | C3 | 179.3° | 177.6° |
C6 | C5 | C4 | H4 | 60.6° | 62.4° |
C5 | C6 | H6A | H6 | 119.8° | 120.0° |
C5 | C6 | O6 | HO6 | 180.0° | 180.0° |
O5 | C5 | C4 | H5 | 119.2° | 120.0° |
C5 | O5 | C1 | O1 | 60.7° | 58.8° |
C5 | O5 | C1 | C2 | 62.3° | 61.2° |
O5 | C5 | C4 | O4 | 61.7° | 62.3° |
O5 | C5 | C4 | C3 | 57.3° | 57.6° |
C5 | O5 | C1 | H1 | 179.4° | 178.8° |
O5 | C5 | C4 | H4 | 177.5° | 177.6° |
O5 | C5 | C6 | H6A | 60.5° | 174.9° |
O5 | C5 | C6 | H6 | 179.7° | 54.9° |
C1 | O5 | C5 | C4 | 63.9° | 61.2° |
O5 | C1 | O1 | C2 | 122.5° | 119.9° |
O5 | C1 | O1 | H1 | 119.7° | 120.0° |
O5 | C1 | C2 | H1 | 118.1° | 120.0° |
O5 | C1 | C2 | C3 | 52.4° | 57.6° |
O5 | C1 | C2 | O2 | 169.8° | 177.5° |
O5 | C1 | C2 | H2 | 68.1° | 62.3° |
C1 | O5 | C5 | H5 | 54.5° | 58.8° |
C5 | C4 | O4 | C3 | 120.6° | 119.7° |
C5 | C4 | O4 | H4 | 120.0° | 120.2° |
C5 | C4 | C3 | H4 | 119.8° | 120.0° |
C5 | C4 | C3 | C2 | 53.0° | 57.0° |
C5 | C4 | C3 | O3 | 176.5° | 176.9° |
C5 | C4 | C3 | H3 | 65.7° | 63.0° |
C5 | C4 | O4 | HO4 | 180.0° | 179.7° |
C4 | C5 | C6 | H6A | 59.5° | 55.0° |
C4 | C5 | C6 | H6 | 60.4° | 65.0° |
O1 | C1 | C2 | H1 | 119.0° | 120.1° |
O1 | C1 | C2 | C3 | 70.5° | 62.4° |
O1 | C1 | C2 | O2 | 46.9° | 57.6° |
O1 | C1 | C2 | H2 | 169.0° | 177.7° |
C1 | O1 | C6' | H6' | 66.7° | 60.0° |
C1 | O1 | C6' | H6'A | 54.0° | 60.0° |
C1 | C2 | C3 | C4 | 49.9° | 57.0° |
C1 | C2 | C3 | O2 | 117.5° | 119.9° |
C1 | C2 | C3 | H2 | 120.3° | 119.9° |
C1 | C2 | O2 | H2 | 120.8° | 120.1° |
C1 | C2 | C3 | O3 | 171.7° | 176.8° |
C1 | C2 | O2 | HO2 | 180.0° | 60.0° |
C1 | C2 | C3 | H3 | 69.2° | 63.0° |
O4 | C4 | C3 | H4 | 120.0° | 120.1° |
O4 | C4 | C3 | C2 | 67.2° | 62.9° |
O4 | C4 | C3 | O3 | 56.3° | 57.0° |
O4 | C4 | C3 | H3 | 174.1° | 177.2° |
O4 | C4 | C5 | H5 | 179.1° | 177.7° |
C4 | C3 | C2 | O3 | 121.9° | 119.9° |
C4 | C3 | C2 | H3 | 119.1° | 120.0° |
C4 | C3 | C2 | O2 | 167.4° | 176.9° |
C4 | C3 | O3 | H3 | 117.1° | 120.3° |
C4 | C3 | C2 | H2 | 70.4° | 63.0° |
C4 | C3 | O3 | HO3 | 180.0° | 179.6° |
C3 | C4 | O4 | HO4 | 59.4° | 60.1° |
C3 | C4 | C5 | H5 | 61.8° | 62.4° |
C3 | C2 | O2 | H2 | 121.1° | 120.2° |
C2 | C3 | O3 | H3 | 118.2° | 120.1° |
C3 | C2 | C1 | H1 | 170.5° | 177.5° |
C3 | C2 | O2 | HO2 | 62.0° | 179.7° |
C2 | C3 | O3 | HO3 | 55.3° | 60.0° |
C2 | C3 | C4 | H4 | 172.9° | 177.0° |
O2 | C2 | C3 | O3 | 70.8° | 63.2° |
O2 | C2 | C1 | H1 | 72.1° | 62.5° |
O2 | C2 | C3 | H3 | 48.3° | 56.9° |
O3 | C3 | C2 | H2 | 51.5° | 56.9° |
O3 | C3 | C4 | H4 | 63.7° | 63.1° |
H1 | C1 | C2 | H2 | 50.0° | 57.6° |
H2 | C2 | O2 | HO2 | 59.2° | 60.1° |
H2 | C2 | C3 | H3 | 170.5° | 177.0° |
H3 | C3 | O3 | HO3 | 62.9° | 60.1° |
H3 | C3 | C4 | H4 | 54.1° | 57.0° |
H4 | C4 | O4 | HO4 | 60.0° | 60.1° |
H4 | C4 | C5 | H5 | 58.3° | 57.6° |
H5 | C5 | C6 | H6A | 178.2° | 65.0° |
H5 | C5 | C6 | H6 | 58.4° | 175.0° |
H6A | C6 | O6 | HO6 | 59.9° | 60.0° |
H6 | C6 | O6 | HO6 | 59.9° | 60.0° |
H1' | C1' | O1' | HO1' | 64.2° | 60.1° |
H1' | C1' | C2' | H2' | 4.2° | 57.7° |
H2' | C2' | O2' | HO2' | 64.5° | 59.8° |
H2' | C2' | C3' | H3' | 163.1° | 177.2° |
H3' | C3' | O3' | HO3' | 60.2° | 60.2° |
H3' | C3' | C4' | H4' | 177.8° | 177.2° |
H4' | C4' | O4' | HO4' | 60.1° | 60.1° |
H4' | C4' | C5' | H5' | 159.3° | 177.7° |
H5' | C5' | C6' | H6' | 67.6° | 174.9° |
H5' | C5' | C6' | H6'A | 171.8° | 65.0° |