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MJ3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4C4doub1.22Å1.23Å
C5C4sing1.42Å1.32Å
C5C6doub1.35Å1.32Å
C4N3sing1.35Å1.35Å
C6N1sing1.37Å1.37Å
N3C2sing1.35Å1.33Å
O1APAdoub1.48Å1.50Å
N1C2sing1.35Å1.43Å
N1C1Csing1.46Å1.48Å
C2O2doub1.22Å1.27Å
O1BPBdoub1.48Å1.50Å
O2CC2Csing1.43Å1.42Å
C2CC1Csing1.54Å1.50Å
C2CC3Csing1.55Å1.50Å
O2APAsing1.61Å1.46Å
PAO3Asing1.61Å1.58Å
PAO5Csing1.61Å1.59Å
C1CO4Csing1.44Å1.44Å
O7'C7'doub1.21Å1.21Å
O2BPBsing1.61Å1.51Å
PBO3Asing1.61Å1.60Å
PBO3Bsing1.61Å1.61Å
O4CC4Csing1.44Å1.42Å
C5CO5Csing1.43Å1.43Å
C5CC4Csing1.53Å1.50Å
C3CC4Csing1.55Å1.56Å
C3CO3Csing1.43Å1.44Å
C7'C8'sing1.51Å1.50Å
C7'N2'sing1.35Å1.38Å
O3BC1'sing1.43Å1.39Å
C2'C1'sing1.53Å1.55Å
C2'N2'sing1.47Å1.44Å
C2'C3'sing1.53Å1.53Å
O43C41doub1.21Å1.22Å
C1'O5'sing1.43Å1.44Å
C41C42sing1.51Å1.48Å
C41N3'sing1.35Å1.34Å
C3'N3'sing1.47Å1.44Å
C3'C4'sing1.53Å1.52Å
O5'C5'sing1.43Å1.40Å
C5'C4'sing1.53Å1.53Å
C5'C6'sing1.51Å1.50Å
C4'O4'sing1.43Å1.45Å
C6'O'Qdoub1.21Å1.30Å
C6'O'Psing1.34Å1.28Å
N3H1sing0.97Å1.00Å
C5H2sing1.08Å1.08Å
C6H3sing1.08Å1.08Å
O'PH4sing0.97Å0.95Å
C1'H5sing1.09Å1.10Å
C1CH6sing1.09Å1.10Å
C2'H7sing1.09Å1.10Å
N2'H8sing0.97Å1.00Å
O2AH9sing0.97Å0.95Å
O2BH10sing0.97Å0.95Å
C2CH11sing1.09Å1.10Å
O2CH12sing0.97Å0.95Å
C3'H13sing1.09Å1.10Å
N3'H14sing0.97Å1.00Å
C3CH15sing1.09Å1.10Å
O3CH16sing0.97Å0.95Å
C4'H17sing1.09Å1.10Å
O4'H18sing0.97Å0.95Å
C4CH19sing1.09Å1.10Å
C5'H20sing1.09Å1.10Å
C5CH21sing1.09Å1.10Å
C5CH22sing1.09Å1.10Å
C8'H23sing1.09Å1.10Å
C8'H24sing1.09Å1.10Å
C8'H25sing1.09Å1.10Å
C42H26sing1.09Å1.10Å
C42H27sing1.09Å1.10Å
C42H28sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O4C4C5120.0°120.3°
O4C4N3117.1°120.3°
C4C5C6118.7°119.1°
C5C4N3122.8°119.4°
C4C5H2120.7°120.5°
C5C6N1121.8°119.7°
C6C5H2120.6°120.4°
C5C6H3119.1°120.2°
C4N3C2121.3°120.3°
C4N3H1119.4°119.8°
C6N1C2118.9°120.6°
C6N1C1C120.1°119.7°
N1C6H3119.1°120.1°
N3C2N1116.4°120.9°
N3C2O2119.9°119.6°
C2N3H1119.3°119.8°
O1APAO2A119.7°109.5°
O1APAO3A110.7°109.5°
O1APAO5C108.4°109.5°
C2N1C1C120.8°119.7°
N1C2O2123.6°119.5°
N1C1CC2C118.1°110.4°
N1C1CO4C105.0°110.4°
N1C1CH6109.6°110.4°
O1BPBO2B115.1°109.4°
O1BPBO3A108.6°109.5°
O1BPBO3B110.9°109.4°
O2CC2CC1C112.9°110.5°
O2CC2CC3C113.8°110.5°
O2CC2CH11110.2°110.6°
C2CO2CH12109.5°114.0°
C1CC2CC3C101.4°104.1°
C2CC1CO4C104.4°104.8°
C2CC1CH6109.3°110.5°
C1CC2CH11109.0°110.5°
C2CC3CC4C105.4°104.0°
C2CC3CO3C108.0°110.5°
C3CC2CH11109.1°110.5°
C2CC3CH15110.8°110.5°
O2APAO3A106.7°109.5°
O2APAO5C105.5°109.5°
PAO2AH9109.5°114.0°
O3APAO5C104.8°109.4°
PAO3APB124.3°134.0°
PAO5CC5C123.3°123.0°
C1CO4CC4C110.3°105.3°
O4CC1CH6110.1°110.3°
O7'C7'C8'118.3°120.0°
O7'C7'N2'124.7°120.0°
O2BPBO3A109.4°109.5°
O2BPBO3B105.1°109.5°
PBO2BH10109.5°114.0°
O3APBO3B107.5°109.5°
PBO3BC1'118.0°123.0°
O4CC4CC5C108.0°110.5°
O4CC4CC3C104.0°104.8°
O4CC4CH19112.1°110.4°
O5CC5CC4C112.2°109.4°
O5CC5CH21108.8°109.5°
O5CC5CH22108.8°109.5°
C5CC4CC3C111.4°110.4°
C5CC4CH19111.0°110.4°
C4CC5CH21108.8°109.4°
C4CC5CH22108.8°109.5°
C4CC3CO3C110.7°110.5°
C4CC3CH15109.9°110.5°
C3CC4CH19110.1°110.4°
O3CC3CH15111.8°110.6°
C3CO3CH16109.5°114.0°
C8'C7'N2'117.1°120.0°
C7'C8'H23109.5°109.5°
C7'C8'H24109.5°109.5°
C7'C8'H25109.5°109.5°
C7'N2'C2'124.5°120.0°
C7'N2'H8117.7°120.0°
O3BC1'C2'107.0°109.5°
O3BC1'O5'108.8°109.5°
O3BC1'H5111.0°109.5°
C1'C2'N2'104.8°109.5°
C1'C2'C3'107.0°109.2°
C2'C1'O5'111.0°109.4°
C2'C1'H5108.8°109.5°
C1'C2'H7109.0°109.6°
N2'C2'C3'115.9°109.5°
N2'C2'H7110.6°109.5°
C2'N2'H8117.7°120.0°
C2'C3'N3'114.5°109.5°
C2'C3'C4'114.8°109.1°
C3'C2'H7109.2°109.6°
C2'C3'H13105.1°109.5°
O43C41C42119.3°120.0°
O43C41N3'123.1°120.0°
C1'O5'C5'114.4°114.1°
O5'C1'H5110.2°109.5°
C42C41N3'117.5°120.0°
C41C42H26109.5°109.4°
C41C42H27109.5°109.5°
C41C42H28109.5°109.5°
C41N3'C3'122.7°120.0°
C41N3'H14118.6°120.0°
N3'C3'C4'110.2°109.5°
N3'C3'H13106.1°109.5°
C3'N3'H14118.6°120.0°
C3'C4'C5'111.6°109.1°
C3'C4'O4'109.0°109.5°
C4'C3'H13105.2°109.7°
C3'C4'H17109.3°109.6°
O5'C5'C4'111.4°109.4°
O5'C5'C6'112.1°109.4°
O5'C5'H20109.3°109.5°
C4'C5'C6'108.4°109.5°
C5'C4'O4'107.4°109.5°
C5'C4'H17109.2°109.6°
C4'C5'H20107.6°109.5°
C5'C6'O'Q120.9°120.0°
C5'C6'O'P113.8°120.0°
C6'C5'H20107.9°109.5°
O4'C4'H17110.3°109.5°
C4'O4'H18109.5°114.0°
O'QC6'O'P125.2°120.0°
C6'O'PH4109.5°117.0°
H21C5CH22109.5°109.5°
H23C8'H24109.5°109.5°
H23C8'H25109.5°109.5°
H24C8'H25109.5°109.4°
H26C42H27109.5°109.5°
H26C42H28109.5°109.4°
H27C42H28109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4C4C5N3179.1°180.0°
O4C4C5C6179.1°179.7°
O4C4N3C2178.8°180.0°
O4C4N3H11.2°0.1°
O4C4C5H20.9°0.0°
C4C5C6H2180.0°179.7°
C4C5C6N11.4°0.5°
C5C4N3C20.3°0.0°
C5C4N3H1179.7°179.9°
C4C5C6H3178.6°180.0°
C6C5C4N30.0°0.3°
C5C6N1H3180.0°179.5°
C5C6N1C23.0°0.5°
C5C6N1C1C177.9°179.7°
C4N3C2H1180.0°179.9°
C4N3C2N11.9°0.1°
C4N3C2O2179.0°180.0°
N3C4C5H2180.0°180.0°
C6N1C2N33.2°0.2°
C6N1C2C1C174.8°179.8°
C6N1C2O2179.8°179.7°
C6N1C1CC2C60.5°62.1°
C6N1C1CO4C55.2°53.3°
N1C6C5H2178.6°179.7°
C6N1C1CH6173.5°175.5°
N3C2N1O2177.0°179.9°
N3C2N1C1C178.0°180.0°
O1APAO2AO3A126.6°120.0°
O1APAO2AO5C122.3°120.0°
O1APAO3AO5C116.7°120.0°
O1APAO3APB35.4°45.0°
O1APAO5CC5C20.5°55.0°
O1APAO2AH90.0°180.0°
C2N1C1CC2C124.7°118.2°
C2N1C1CO4C119.6°126.5°
N1C2N3H1178.1°179.9°
C2N1C6H3176.9°180.0°
C2N1C1CH61.3°4.2°
C1CN1C2O25.0°0.1°
N1C1CC2CO2C83.8°98.6°
N1C1CC2CO4C116.1°118.8°
N1C1CC2CH6126.1°122.3°
N1C1CC2CC3C154.2°142.8°
N1C1CO4CH6117.9°122.2°
N1C1CO4CC4C156.6°159.3°
C1CN1C6H32.1°0.3°
N1C1CC2CH1139.1°24.1°
O2C2N3H11.0°0.1°
O1BPBO3APA96.3°45.0°
O1BPBO2BO3A122.6°120.0°
O1BPBO2BO3B122.3°119.9°
O1BPBO3AO3B120.1°120.0°
O1BPBO3BC1'45.9°55.0°
O1BPBO2BH100.0°180.0°
O2CC2CC1CC3C122.1°118.6°
O2CC2CC1CH11122.9°122.7°
O2CC2CC3CH11123.5°122.7°
O2CC2CC1CO4C160.2°142.6°
O2CC2CC3CC4C152.6°118.6°
O2CC2CC3CO3C34.3°0.0°
O2CC2CC1CH642.4°23.8°
O2CC2CC3CH1588.5°122.7°
C1CC2CC3CH11115.0°118.7°
C2CC1CO4CH6117.2°118.9°
C2CC1CO4CC4C31.7°40.5°
C1CC2CC3CC4C31.1°0.0°
C1CC2CC3CO3C87.2°118.6°
C1CC2CO2CH12180.0°180.0°
C1CC2CC3CH15150.0°118.6°
C3CC2CC1CO4C38.1°24.0°
C2CC3CC4CO4C13.4°24.0°
C2CC3CC4CC5C102.7°142.9°
C2CC3CC4CO3C116.6°118.6°
C2CC3CC4CH15119.5°118.6°
C2CC3CO3CH15122.2°122.7°
C3CC2CC1CH679.7°94.9°
C3CC2CO2CH1265.1°65.3°
C2CC3CO3CH16180.0°61.5°
C2CC3CC4CH19133.7°94.8°
O2APAO3AO5C111.6°120.0°
O2APAO3APB167.1°75.0°
O2APAO5CC5C149.9°65.0°
PAO3APBO2B30.1°75.0°
PAO3APBO3B143.6°165.0°
O3APAO5CC5C97.7°175.0°
O3APAO2AH9126.6°59.9°
O5CPAO3APB81.3°165.0°
PAO5CC5CC4C150.8°180.0°
O5CPAO2AH9122.3°60.0°
PAO5CC5CH2130.4°60.1°
PAO5CC5CH2288.8°60.0°
C1CO4CC4CC5C129.7°159.4°
C1CO4CC4CC3C11.3°40.5°
O4CC1CC2CH1176.9°94.7°
C1CO4CC4CH19107.7°78.3°
O7'C7'C8'N2'178.2°180.0°
O7'C7'N2'C2'10.9°0.0°
O7'C7'N2'H8169.1°180.0°
O7'C7'C8'H230.0°180.0°
O7'C7'C8'H24120.0°60.0°
O7'C7'C8'H25120.0°60.0°
O2BPBO3AO3B113.6°120.0°
O2BPBO3BC1'170.8°65.0°
O3APBO3BC1'72.7°175.0°
O3APBO2BH10122.6°60.0°
PBO3BC1'C2'106.7°150.1°
PBO3BC1'O5'133.4°90.0°
PBO3BC1'H511.9°30.1°
O3BPBO2BH10122.3°60.1°
O4CC4CC5CO5C55.5°69.6°
O4CC4CC5CC3C113.6°115.4°
O4CC4CC5CH19123.3°122.3°
O4CC4CC3CH19120.3°118.8°
O4CC4CC3CO3C103.2°142.6°
C4CO4CC1CH685.5°78.4°
O4CC4CC3CH15132.9°94.7°
O4CC4CC5CH2164.9°170.5°
O4CC4CC5CH22176.0°50.4°
O5CC5CC4CH21120.4°120.0°
O5CC5CC4CH22120.4°120.0°
O5CC5CC4CC3C169.1°175.0°
O5CC5CC4CH1967.8°52.7°
O5CC5CH21H22118.8°120.1°
C5CC4CC3CH19123.6°122.3°
C5CC4CC3CO3C140.8°98.5°
C5CC4CC3CH1516.8°24.3°
C4CC5CH21H22118.7°120.0°
C4CC3CO3CH15122.9°122.7°
C4CC3CC2CH1183.8°118.7°
C4CC3CO3CH1665.1°176.1°
C3CC4CC5CH2148.7°55.0°
C3CC4CC5CH2270.4°65.0°
O3CC3CC2CH11157.8°122.7°
O3CC3CC4CH1917.1°23.8°
C8'C7'N2'C2'170.9°180.0°
C8'C7'N2'H89.1°0.0°
C7'C8'H23H24120.0°120.0°
C7'C8'H23H25120.0°120.0°
C7'C8'H24H25120.0°120.0°
C7'N2'C2'C1'72.5°85.0°
C7'N2'C2'H8180.0°180.0°
C7'N2'C2'C3'169.8°155.3°
C7'N2'C2'H744.8°35.1°
N2'C7'C8'H23178.2°0.0°
N2'C7'C8'H2461.7°120.0°
N2'C7'C8'H2558.2°120.0°
O3BC1'C2'O5'118.5°120.0°
O3BC1'C2'H5120.0°120.0°
O3BC1'C2'N2'173.6°177.7°
O3BC1'C2'C3'62.8°62.4°
O3BC1'O5'H5122.0°120.0°
O3BC1'O5'C5'54.0°58.9°
O3BC1'C2'H755.2°57.6°
C1'C2'N2'C3'117.7°119.7°
C1'C2'N2'H7117.3°120.1°
C1'C2'C3'H7117.9°120.0°
C2'C1'O5'H5120.6°120.0°
C1'C2'C3'N3'178.8°176.8°
C1'C2'C3'C4'49.9°57.0°
C2'C1'O5'C5'63.4°61.1°
C1'C2'N2'H8107.5°95.0°
C1'C2'C3'H1365.2°63.1°
N2'C2'C3'H7125.7°120.1°
N2'C2'C1'O5'67.9°62.3°
N2'C2'C3'N3'62.3°57.0°
N2'C2'C3'C4'66.6°62.9°
N2'C2'C1'H553.6°57.7°
N2'C2'C3'H13178.3°177.1°
C3'C2'C1'O5'55.7°57.6°
C2'C3'N3'C4199.0°155.0°
C2'C3'N3'C4'131.2°119.5°
C2'C3'N3'H13115.4°120.1°
C2'C3'C4'H13115.0°120.0°
C2'C3'C4'C5'47.0°57.0°
C2'C3'C4'O4'165.5°176.9°
C3'C2'C1'H5177.2°177.6°
C3'C2'N2'H810.2°24.7°
C2'C3'N3'H1481.0°25.0°
C2'C3'C4'H1773.9°63.0°
O43C41C42N3'177.0°180.0°
O43C41N3'C3'0.3°0.0°
O43C41N3'H14179.6°180.0°
O43C41C42H260.0°90.0°
O43C41C42H27120.0°150.0°
O43C41C42H28120.0°30.0°
C1'O5'C5'C4'58.1°61.1°
C1'O5'C5'C6'179.8°178.9°
O5'C1'C2'H7173.7°177.6°
C1'O5'C5'H2060.6°58.9°
C42C41N3'C3'177.2°180.0°
C42C41N3'H142.8°0.0°
C41C42H26H27120.0°120.0°
C41C42H26H28120.0°120.0°
C41C42H27H28120.0°120.0°
C41N3'C3'H14180.0°180.0°
C41N3'C3'C4'129.9°85.5°
C41N3'C3'H1316.5°34.9°
N3'C41C42H26177.0°90.0°
N3'C41C42H2757.0°30.0°
N3'C41C42H2863.0°150.0°
N3'C3'C4'H13113.9°120.2°
N3'C3'C4'C5'178.1°176.9°
N3'C3'C4'O4'63.4°63.3°
N3'C3'C2'H763.4°63.2°
N3'C3'C4'H1757.2°56.9°
C3'C4'C5'O5'48.4°57.6°
C3'C4'C5'O4'119.4°119.9°
C3'C4'C5'H17120.9°120.0°
C3'C4'C5'C6'172.1°177.6°
C3'C4'O4'H17120.0°120.2°
C4'C3'C2'H7167.7°177.0°
C4'C3'N3'H1450.2°94.5°
C3'C4'O4'H18180.0°180.0°
C3'C4'C5'H2071.4°62.4°
O5'C5'C4'C6'123.8°120.0°
O5'C5'C4'H20119.8°120.0°
O5'C5'C6'H20120.4°120.0°
O5'C5'C4'O4'167.8°177.5°
O5'C5'C6'O'Q51.8°5.0°
O5'C5'C6'O'P132.2°175.0°
C5'O5'C1'H5176.0°178.9°
O5'C5'C4'H1772.6°62.3°
C4'C5'C6'H20116.2°120.1°
C5'C4'O4'H17118.9°120.2°
C4'C5'C6'O'Q71.6°115.0°
C4'C5'C6'O'P104.4°65.0°
C5'C4'C3'H1368.0°62.9°
C5'C4'O4'H1859.0°60.3°
C6'C5'C4'O4'68.4°62.5°
C5'C6'O'QO'P175.5°180.0°
C5'C6'O'PH4175.8°180.0°
C6'C5'C4'H1751.2°57.6°
O4'C4'C3'H1350.5°56.9°
O4'C4'C5'H2048.0°57.5°
O'QC6'O'PH40.0°0.0°
O'QC6'C5'H20172.2°124.9°
O'PC6'C5'H2011.8°55.0°
H2C5C6H31.4°0.3°
H5C1'C2'H764.8°62.3°
H6C1CC2CH11165.3°146.5°
H7C2'N2'H8135.2°144.9°
H7C2'C3'H1352.6°56.9°
H11C2CO2CH1257.8°57.4°
H11C2CC3CH1535.0°0.0°
H13C3'N3'H14163.5°145.2°
H13C3'C4'H17171.1°177.1°
H15C3CO3CH1657.8°61.2°
H15C3CC4CH19106.8°146.5°
H17C4'O4'H1860.0°59.8°
H17C4'C5'H20167.6°177.7°
H19C4CC5CH21171.8°67.2°
H19C4CC5CH2252.7°172.7°
H23C8'H24H25120.0°120.0°
H26C42H27H28120.0°120.0°

223532

PDB entries from 2024-08-07

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