Obsolete: MDG

MDG was replaced with M7G on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
PB	O1B	doub	1.48Å	1.62Å
PB	O2B	sing	1.61Å	1.49Å
PB	O3B	sing	1.61Å	1.48Å
PB	O3A	sing	1.61Å	1.62Å
O2B	HOB2	sing	0.97Å	0.95Å
O3B	HOB3	sing	0.97Å	0.95Å
O3A	PA	sing	1.61Å	1.62Å
PA	O1A	doub	1.48Å	1.49Å
PA	O2A	sing	1.61Å	1.49Å
PA	O5'	sing	1.61Å	1.61Å
O2A	HOA2	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.44Å
C5'	C4'	sing	1.53Å	1.53Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.44Å	1.42Å
C4'	C3'	sing	1.54Å	1.52Å
C4'	H4'	sing	1.09Å	1.12Å
O4'	C1'	sing	1.44Å	1.44Å
C3'	O3'	sing	1.43Å	1.44Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	H3'	sing	1.09Å	1.11Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	O2'	sing	1.43Å	1.43Å
C2'	C1'	sing	1.54Å	1.53Å
C2'	H2'	sing	1.09Å	1.11Å
O2'	HO2'	sing	0.97Å	0.95Å
C1'	N9	sing	1.46Å	1.48Å
C1'	H1'	sing	1.09Å	1.12Å
N9	C8	sing	1.47Å	1.37Å
N9	C4	sing	1.38Å	1.38Å
C8	N7	sing	1.47Å	1.29Å
C8	H81	sing	1.09Å	1.12Å
C8	H82	sing	1.09Å	1.11Å
N7	CM7	sing	1.46Å	1.44Å
N7	C5	sing	1.41Å	1.39Å
CM7	HM71	sing	1.09Å	1.11Å
CM7	HM72	sing	1.09Å	1.12Å
CM7	HM73	sing	1.09Å	1.11Å
C5	C6	sing	1.40Å	1.41Å
C5	C4	doub	1.39Å	1.37Å
C6	O6	doub	1.22Å	1.22Å
C6	N1	sing	1.35Å	1.38Å
N1	C2	sing	1.36Å	1.38Å
N1	HN1	sing	0.97Å	1.02Å
C2	N2	sing	1.37Å	1.33Å
C2	N3	doub	1.31Å	1.34Å
N2	HN21	sing	0.97Å	1.02Å
N2	HN22	sing	0.97Å	1.02Å
N3	C4	sing	1.34Å	1.36Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1B	PB	O2B	106.4°	109.4°
O1B	PB	O3B	109.3°	109.5°
O1B	PB	O3A	108.3°	109.5°
O2B	PB	O3B	118.4°	109.5°
O2B	PB	O3A	105.8°	109.5°
PB	O2B	HOB2	106.5°	106.8°
O3B	PB	O3A	108.3°	109.5°
PB	O3B	HOB3	109.3°	106.8°
PB	O3A	PA	125.3°	106.8°
O3A	PA	O1A	110.0°	109.5°
O3A	PA	O2A	107.9°	109.5°
O3A	PA	O5'	104.1°	109.4°
O1A	PA	O2A	117.4°	109.5°
O1A	PA	O5'	108.8°	109.4°
O2A	PA	O5'	107.8°	109.5°
PA	O2A	HOA2	107.9°	106.9°
PA	O5'	C5'	123.0°	106.8°
O5'	C5'	C4'	113.3°	109.5°
O5'	C5'	H5'1	110.8°	109.5°
O5'	C5'	H5'2	110.8°	109.4°
C4'	C5'	H5'1	110.8°	109.5°
C4'	C5'	H5'2	110.8°	109.5°
C5'	C4'	O4'	110.3°	110.3°
C5'	C4'	C3'	111.5°	110.5°
C5'	C4'	H4'	106.0°	110.3°
H5'1	C5'	H5'2	99.4°	109.4°
O4'	C4'	C3'	104.4°	104.8°
O4'	C4'	H4'	113.0°	110.4°
C4'	O4'	C1'	106.4°	105.2°
C3'	C4'	H4'	111.7°	110.4°
C4'	C3'	O3'	110.8°	110.5°
C4'	C3'	C2'	103.4°	104.1°
C4'	C3'	H3'	112.9°	110.5°
O4'	C1'	C2'	108.8°	104.9°
O4'	C1'	N9	106.4°	110.4°
O4'	C1'	H1'	113.7°	110.4°
O3'	C3'	C2'	110.4°	110.6°
O3'	C3'	H3'	106.2°	110.5°
C3'	O3'	HO3'	110.8°	106.8°
C2'	C3'	H3'	113.3°	110.5°
C3'	C2'	O2'	112.7°	110.5°
C3'	C2'	C1'	102.4°	104.0°
C3'	C2'	H2'	111.1°	110.5°
O2'	C2'	C1'	106.6°	110.8°
O2'	C2'	H2'	107.2°	110.5°
C2'	O2'	HO2'	112.8°	106.8°
C1'	C2'	H2'	116.8°	110.5°
C2'	C1'	N9	114.3°	110.4°
C2'	C1'	H1'	105.7°	110.4°
N9	C1'	H1'	108.1°	110.3°
C1'	N9	C8	128.6°	126.1°
C1'	N9	C4	125.6°	126.1°
C8	N9	C4	105.5°	107.8°
N9	C8	N7	114.0°	105.6°
N9	C8	H81	110.5°	110.2°
N9	C8	H82	110.5°	110.2°
N9	C4	C5	105.6°	110.0°
N9	C4	N3	126.6°	130.6°
N7	C8	H81	110.6°	110.2°
N7	C8	H82	110.6°	110.2°
C8	N7	CM7	124.5°	126.7°
C8	N7	C5	104.0°	106.7°
H81	C8	H82	99.7°	110.3°
CM7	N7	C5	131.5°	126.6°
N7	CM7	HM71	124.5°	109.5°
N7	CM7	HM72	106.9°	109.5°
N7	CM7	HM73	106.9°	109.5°
N7	C5	C6	129.9°	131.3°
N7	C5	C4	110.8°	109.8°
HM71	CM7	HM72	106.9°	109.4°
HM71	CM7	HM73	107.0°	109.5°
HM72	CM7	HM73	102.7°	109.5°
C6	C5	C4	119.2°	118.9°
C5	C6	O6	128.3°	120.6°
C5	C6	N1	112.3°	118.9°
C5	C4	N3	127.8°	119.4°
O6	C6	N1	119.4°	120.5°
C6	N1	C2	125.8°	120.0°
C6	N1	HN1	117.1°	120.0°
C2	N1	HN1	117.1°	120.0°
N1	C2	N2	117.7°	119.2°
N1	C2	N3	121.9°	121.5°
N2	C2	N3	120.3°	119.3°
C2	N2	HN21	117.7°	120.0°
C2	N2	HN22	109.3°	120.0°
C2	N3	C4	113.0°	121.3°
HN21	N2	HN22	109.3°	119.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1B	PB	O2B	O3B	123.4°	120.0°
O1B	PB	O2B	O3A	115.1°	120.0°
O1B	PB	O3B	O3A	117.8°	120.0°
O1B	PB	O2B	HOB2	180.0°	60.0°
O1B	PB	O3B	HOB3	180.0°	180.0°
O1B	PB	O3A	PA	99.9°	60.1°
O2B	PB	O3B	O3A	120.3°	120.0°
O2B	PB	O3B	HOB3	58.0°	60.0°
O2B	PB	O3A	PA	146.3°	180.0°
O3B	PB	O2B	HOB2	56.6°	60.0°
O3B	PB	O3A	PA	18.5°	60.0°
O3A	PB	O2B	HOB2	64.9°	180.0°
O3A	PB	O3B	HOB3	62.3°	60.0°
PB	O3A	PA	O1A	54.5°	60.1°
PB	O3A	PA	O2A	74.7°	60.0°
PB	O3A	PA	O5'	170.9°	180.0°
O3A	PA	O1A	O2A	123.9°	120.0°
O3A	PA	O1A	O5'	113.5°	119.9°
O3A	PA	O2A	O5'	111.9°	119.9°
O3A	PA	O2A	HOA2	180.0°	60.0°
O3A	PA	O5'	C5'	50.9°	180.0°
O1A	PA	O2A	O5'	123.2°	120.0°
O1A	PA	O2A	HOA2	55.0°	180.0°
O1A	PA	O5'	C5'	66.4°	60.1°
O2A	PA	O5'	C5'	165.3°	60.0°
O5'	PA	O2A	HOA2	68.1°	60.0°
PA	O5'	C5'	C4'	101.0°	180.0°
PA	O5'	C5'	H5'1	133.7°	59.9°
PA	O5'	C5'	H5'2	24.3°	60.0°
O5'	C5'	C4'	H5'1	125.3°	120.1°
O5'	C5'	C4'	H5'2	125.3°	120.0°
O5'	C5'	H5'1	H5'2	116.7°	119.9°
O5'	C5'	C4'	O4'	56.6°	61.4°
O5'	C5'	C4'	C3'	59.0°	176.9°
O5'	C5'	C4'	H4'	179.2°	60.8°
C4'	C5'	H5'1	H5'2	116.6°	120.0°
C5'	C4'	O4'	C3'	119.9°	119.0°
C5'	C4'	O4'	H4'	118.4°	122.2°
C5'	C4'	C3'	H4'	118.5°	122.3°
C5'	C4'	O4'	C1'	155.6°	159.5°
C5'	C4'	C3'	O3'	84.4°	98.3°
C5'	C4'	C3'	C2'	157.3°	142.9°
C5'	C4'	C3'	H3'	34.5°	24.2°
H5'1	C5'	C4'	O4'	178.1°	178.5°
H5'1	C5'	C4'	C3'	66.4°	63.1°
H5'1	C5'	C4'	H4'	55.5°	59.2°
H5'2	C5'	C4'	O4'	68.7°	58.5°
H5'2	C5'	C4'	C3'	175.7°	56.9°
H5'2	C5'	C4'	H4'	53.9°	179.2°
O4'	C4'	C3'	H4'	122.4°	118.9°
O4'	C4'	C3'	O3'	156.5°	142.8°
O4'	C4'	C3'	C2'	38.2°	24.1°
O4'	C4'	C3'	H3'	84.5°	94.6°
C4'	O4'	C1'	C2'	19.4°	40.5°
C4'	O4'	C1'	N9	143.1°	159.4°
C4'	O4'	C1'	H1'	98.0°	78.4°
C3'	C4'	O4'	C1'	35.7°	40.5°
C4'	C3'	O3'	C2'	114.0°	114.7°
C4'	C3'	O3'	H3'	122.9°	122.6°
C4'	C3'	C2'	H3'	122.5°	118.7°
C4'	C3'	O3'	HO3'	180.0°	180.0°
C4'	C3'	C2'	O2'	88.9°	118.8°
C4'	C3'	C2'	C1'	25.2°	0.1°
C4'	C3'	C2'	H2'	150.7°	118.6°
H4'	C4'	O4'	C1'	85.9°	78.3°
H4'	C4'	C3'	O3'	34.1°	23.9°
H4'	C4'	C3'	C2'	84.2°	94.8°
H4'	C4'	C3'	H3'	153.0°	146.5°
O4'	C1'	C2'	C3'	4.7°	23.9°
O4'	C1'	C2'	O2'	113.9°	142.6°
O4'	C1'	C2'	N9	118.7°	118.9°
O4'	C1'	C2'	H1'	122.5°	118.9°
O4'	C1'	C2'	H2'	126.3°	94.7°
O4'	C1'	N9	H1'	122.5°	122.2°
O4'	C1'	N9	C8	41.3°	123.0°
O4'	C1'	N9	C4	132.3°	57.0°
O3'	C3'	C2'	H3'	118.9°	122.6°
O3'	C3'	C2'	O2'	29.7°	0.1°
O3'	C3'	C2'	C1'	143.8°	118.8°
O3'	C3'	C2'	H2'	90.7°	122.7°
C2'	C3'	O3'	HO3'	66.0°	65.3°
C3'	C2'	O2'	C1'	111.6°	114.6°
C3'	C2'	O2'	H2'	122.6°	122.6°
C3'	C2'	C1'	H2'	121.6°	118.6°
C3'	C2'	O2'	HO2'	179.9°	61.5°
C3'	C2'	C1'	N9	114.1°	142.8°
C3'	C2'	C1'	H1'	127.1°	95.0°
H3'	C3'	O3'	HO3'	57.1°	57.4°
H3'	C3'	C2'	O2'	148.6°	122.6°
H3'	C3'	C2'	C1'	97.3°	118.6°
H3'	C3'	C2'	H2'	28.2°	0.1°
O2'	C2'	C1'	H2'	119.8°	122.8°
O2'	C2'	C1'	N9	127.3°	98.6°
O2'	C2'	C1'	H1'	8.5°	23.6°
C1'	C2'	O2'	HO2'	68.4°	176.1°
C2'	C1'	N9	H1'	117.4°	122.3°
C2'	C1'	N9	C8	78.8°	121.5°
C2'	C1'	N9	C4	107.5°	58.5°
H2'	C2'	O2'	HO2'	57.4°	61.1°
H2'	C2'	C1'	N9	7.6°	24.2°
H2'	C2'	C1'	H1'	111.2°	146.4°
C1'	N9	C8	C4	174.7°	180.0°
C1'	N9	C8	N7	174.1°	180.0°
C1'	N9	C8	H81	48.8°	61.0°
C1'	N9	C8	H82	60.6°	60.9°
C1'	N9	C4	C5	174.3°	179.7°
C1'	N9	C4	N3	5.5°	0.0°
H1'	C1'	N9	C8	163.8°	0.7°
H1'	C1'	N9	C4	9.9°	179.3°
N9	C8	N7	H81	125.2°	119.0°
N9	C8	N7	H82	125.3°	119.1°
N9	C8	H81	H82	116.4°	121.9°
N9	C8	N7	CM7	177.0°	180.0°
N9	C8	N7	C5	0.3°	0.3°
C8	N9	C4	C5	0.6°	0.3°
C8	N9	C4	N3	179.6°	180.0°
C4	N9	C8	N7	0.6°	0.0°
C4	N9	C8	H81	125.8°	119.0°
C4	N9	C8	H82	124.7°	119.0°
N9	C4	C5	N7	0.4°	0.4°
N9	C4	C5	C6	179.7°	180.0°
N9	C4	C5	N3	179.8°	179.7°
N9	C4	N3	C2	179.6°	179.8°
N7	C8	H81	H82	116.5°	121.9°
C8	N7	CM7	C5	176.6°	179.6°
C8	N7	CM7	HM71	180.0°	180.0°
C8	N7	CM7	HM72	54.7°	60.0°
C8	N7	CM7	HM73	54.7°	60.0°
C8	N7	C5	C6	179.9°	179.9°
C8	N7	C5	C4	0.0°	0.4°
H81	C8	N7	CM7	51.8°	61.1°
H81	C8	N7	C5	125.6°	119.2°
H82	C8	N7	CM7	57.7°	60.9°
H82	C8	N7	C5	124.9°	118.8°
N7	CM7	HM71	HM72	125.2°	120.0°
N7	CM7	HM71	HM73	125.3°	120.0°
N7	CM7	HM72	HM73	112.3°	120.0°
CM7	N7	C5	C6	3.0°	0.4°
CM7	N7	C5	C4	177.1°	179.9°
C5	N7	CM7	HM71	3.4°	0.3°
C5	N7	CM7	HM72	121.8°	119.6°
C5	N7	CM7	HM73	128.7°	120.4°
N7	C5	C6	C4	179.9°	179.4°
N7	C5	C6	O6	0.6°	0.6°
N7	C5	C6	N1	179.9°	179.5°
N7	C5	C4	N3	179.8°	179.8°
HM71	CM7	HM72	HM73	112.4°	120.0°
C5	C6	O6	N1	179.4°	180.0°
C5	C6	N1	C2	0.2°	0.1°
C5	C6	N1	HN1	179.7°	180.0°
C6	C5	C4	N3	0.1°	0.3°
C4	C5	C6	O6	179.5°	179.9°
C4	C5	C6	N1	0.1°	0.1°
C5	C4	N3	C2	0.2°	0.5°
O6	C6	N1	C2	179.7°	180.0°
O6	C6	N1	HN1	0.2°	0.0°
C6	N1	C2	HN1	179.9°	180.0°
C6	N1	C2	N2	179.7°	179.9°
C6	N1	C2	N3	0.2°	0.3°
N1	C2	N2	N3	179.5°	179.8°
N1	C2	N2	HN21	179.9°	179.9°
N1	C2	N2	HN22	54.7°	0.1°
N1	C2	N3	C4	0.0°	0.5°
HN1	N1	C2	N2	0.3°	0.0°
HN1	N1	C2	N3	179.8°	179.8°
C2	N2	HN21	HN22	125.4°	179.8°
N2	C2	N3	C4	179.5°	179.7°
N3	C2	N2	HN21	0.4°	0.1°
N3	C2	N2	HN22	125.8°	179.7°

Definition date:	1999-07-08
Last modified:	2008-10-14
Release status:	OBS
Processing site:	RCSB
Replaced by:	M7G
Derived from:	1V39