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MD9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CMBC2Bsing1.50Å1.50Å
CMCC2Csing1.50Å1.50Å
CMAC3Asing1.51Å1.50Å
CMDC2Dsing1.51Å1.50Å
CAACBAsing1.53Å1.52Å
CAAC2Asing1.51Å1.52Å
CBACGAsing1.50Å1.48Å
CGAO1Adoub1.22Å1.26Å
CGAO2Asing1.31Å1.25Å
CADCBDsing1.53Å1.50Å
CADC3Dsing1.51Å1.52Å
CBDCGDsing1.50Å1.49Å
CGDO1Ddoub1.22Å1.25Å
CGDO2Dsing1.31Å1.25Å
C2AC3Adoub1.37Å1.37Å
C2AC1Asing1.38Å1.39Å
C3AC4Asing1.38Å1.39Å
C4ANAdoub1.36Å1.38Å
C4ACHBsing1.41Å1.49Å
NAC1Asing1.36Å1.40Å
NAMGsing2.11Å1.70Å
C1ACHAdoub1.41Å1.50Å
CHBC1Bdoub1.40Å1.47Å
C1BC2Bsing1.39Å1.39Å
C1BNBsing1.36Å1.35Å
C2BC3Bdoub1.36Å1.37Å
C3BC4Bsing1.38Å1.39Å
C4BNBsing1.36Å1.36Å
C4BCHCdoub1.43Å1.45Å
NBMGsing2.10Å2.03Å
CHCC1Csing1.40Å1.44Å
C1CC2Csing1.38Å1.38Å
C1CNCdoub1.36Å1.36Å
C2CC3Cdoub1.36Å1.36Å
C3CC4Csing1.38Å1.38Å
C4CNCsing1.36Å1.38Å
C4CCHDdoub1.43Å1.47Å
NCMGsing2.11Å1.87Å
CHDC1Dsing1.41Å1.48Å
C1DC2Ddoub1.37Å1.40ÅAromatic
C1DNDsing1.36Å1.36ÅAromatic
C2DC3Dsing1.37Å1.36ÅAromatic
C3DC4Ddoub1.38Å1.40ÅAromatic
C4DNDsing1.36Å1.35ÅAromatic
C4DCHAsing1.41Å1.48Å
NDMGsing2.12Å1.95Å
CMBH1sing0.97Å1.10Å
CMBH2sing0.97Å1.10Å
CMBH3sing0.97Å1.10Å
CMCH4sing0.97Å1.10Å
CMCH5sing0.97Å1.10Å
CMCH6sing0.97Å1.10Å
CMAH7sing0.97Å1.10Å
CMAH8sing0.97Å1.10Å
CMAH9sing0.97Å1.10Å
CMDH10sing0.97Å1.10Å
CMDH11sing0.97Å1.10Å
CMDH12sing0.97Å1.10Å
CAAH13sing0.98Å1.10Å
CAAH14sing0.98Å1.10Å
CBAH15sing0.99Å1.10Å
CBAH16sing0.99Å1.10Å
CADH17sing0.98Å1.10Å
CADH18sing0.98Å1.10Å
CBDH19sing0.99Å1.10Å
CBDH20sing0.98Å1.10Å
CHBH21sing0.95Å1.08Å
C3BH22sing0.95Å1.08Å
CHCH23sing0.95Å1.08Å
C3CH24sing0.95Å1.08Å
CHDH25sing0.95Å1.08Å
CHAH26sing0.95Å1.08Å
O2DH27sing0.88Å0.95Å
O2AH28sing0.88Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CMBC2BC1B127.8°129.1°
CMBC2BC3B128.0°123.1°
C2BCMBH1109.5°109.6°
C2BCMBH2109.5°109.6°
C2BCMBH3109.5°109.5°
CMCC2CC1C128.1°128.9°
CMCC2CC3C127.5°123.5°
C2CCMCH4109.5°109.6°
C2CCMCH5109.5°109.6°
C2CCMCH6109.5°109.5°
CMAC3AC2A127.2°124.8°
CMAC3AC4A128.4°127.5°
C3ACMAH7109.5°110.4°
C3ACMAH8109.5°109.7°
C3ACMAH9109.5°109.5°
CMDC2DC1D127.5°127.4°
CMDC2DC3D127.3°125.0°
C2DCMDH10109.5°109.7°
C2DCMDH11109.5°110.4°
C2DCMDH12109.5°109.5°
CBACAAC2A117.2°114.3°
CAACBACGA117.4°113.5°
CBACAAH13107.5°108.5°
CBACAAH14107.5°108.7°
CAACBAH15107.5°108.9°
CAACBAH16107.4°109.0°
CAAC2AC3A126.0°126.3°
CAAC2AC1A128.1°126.5°
C2ACAAH13107.5°109.3°
C2ACAAH14107.5°109.9°
CBACGAO1A119.9°123.8°
CBACGAO2A120.0°112.8°
CGACBAH15107.5°108.6°
CGACBAH16107.5°108.9°
O1ACGAO2A120.1°123.4°
CGAO2AH28109.5°112.1°
CBDCADC3D116.7°114.3°
CADCBDCGD119.1°113.6°
CBDCADH17107.6°108.7°
CBDCADH18107.6°108.4°
CADCBDH19107.0°109.0°
CADCBDH20107.0°109.0°
CADC3DC2D127.3°126.3°
CADC3DC4D127.5°126.5°
C3DCADH17107.6°109.8°
C3DCADH18107.6°109.3°
CBDCGDO1D119.5°123.7°
CBDCGDO2D120.1°112.9°
CGDCBDH19107.0°108.8°
CGDCBDH20107.0°108.6°
O1DCGDO2D120.4°123.4°
CGDO2DH27109.5°112.2°
C3AC2AC1A106.0°107.2°
C2AC3AC4A104.4°107.7°
C2AC1ANA114.9°108.9°
C2AC1ACHA111.8°127.5°
C3AC4ANA116.6°108.8°
C3AC4ACHB113.5°128.4°
NAC4ACHB130.0°122.8°
C4ANAC1A98.2°107.4°
C4ANAMG135.0°127.1°
C4ACHBC1B107.8°129.8°
C4ACHBH21126.1°115.8°
C1ANAMG126.8°125.1°
NAC1ACHA133.3°123.6°
NAMGNB86.7°88.1°
NAMGNC163.6°163.1°
NAMGND94.3°90.0°
C1ACHAC4D109.6°131.0°
C1ACHAH26125.2°114.5°
CHBC1BC2B116.6°127.4°
CHBC1BNB128.7°123.6°
C1BCHBH21126.1°114.4°
C2BC1BNB114.8°109.0°
C1BC2BC3B104.2°107.8°
C1BNBC4B101.4°106.6°
C1BNBMG127.1°126.8°
C2BC3BC4B106.1°106.7°
C2BC3BH22127.0°125.9°
C3BC4BNB113.5°109.9°
C3BC4BCHC116.1°124.6°
C4BC3BH22127.0°127.5°
NBC4BCHC130.4°125.5°
C4BNBMG129.6°125.9°
C4BCHCC1C109.0°127.5°
C4BCHCH23125.5°114.6°
NBMGNC84.0°87.8°
NBMGND157.6°163.1°
CHCC1CC2C112.5°127.7°
CHCC1CNC130.8°123.1°
C1CCHCH23125.5°117.9°
C2CC1CNC116.7°109.2°
C1CC2CC3C104.4°107.6°
C1CNCC4C97.7°106.5°
C1CNCMG135.0°128.2°
C2CC3CC4C105.3°106.8°
C2CC3CH24127.4°125.7°
C3CC4CNC116.0°109.8°
C3CC4CCHD112.0°124.6°
C4CC3CH24127.3°127.5°
NCC4CCHD132.0°125.5°
C4CNCMG127.2°124.6°
C4CCHDC1D109.9°129.2°
C4CCHDH25125.1°113.1°
NCMGND89.3°89.2°
CHDC1DC2D118.0°128.6°
CHDC1DND128.2°122.5°
C1DCHDH25125.0°117.7°
C2DC1DND113.7°109.0°
C1DC2DC3D105.2°107.6°
C1DNDC4D101.9°107.4°
C1DNDMG127.8°127.1°
C2DC3DC4D105.2°107.2°
C3DC4DND114.0°108.9°
C3DC4DCHA119.2°127.5°
NDC4DCHA126.9°123.6°
C4DNDMG127.0°125.0°
C4DCHAH26125.2°114.5°
H1CMBH2109.5°109.3°
H1CMBH3109.5°109.4°
H2CMBH3109.4°109.4°
H4CMCH5109.5°109.3°
H4CMCH6109.4°109.4°
H5CMCH6109.5°109.4°
H7CMAH8109.5°108.6°
H7CMAH9109.5°109.3°
H8CMAH9109.5°109.3°
H10CMDH11109.4°108.8°
H10CMDH12109.5°109.2°
H11CMDH12109.5°109.2°
H13CAAH14109.5°105.9°
H15CBAH16109.5°107.7°
H17CADH18109.5°106.0°
H19CBDH20109.4°107.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CMBC2BC1BCHB0.6°0.7°
CMBC2BC1BC3B179.9°179.6°
CMBC2BC1BNB179.4°179.9°
CMBC2BC3BC4B180.0°179.7°
C2BCMBH1H2120.0°120.2°
C2BCMBH1H3120.0°120.1°
C2BCMBH2H3120.0°120.0°
CMBC2BC3BH220.0°0.0°
CMCC2CC1CCHC0.2°0.4°
CMCC2CC1CC3C179.8°179.7°
CMCC2CC1CNC180.0°179.9°
CMCC2CC3CC4C179.8°179.7°
C2CCMCH4H5120.0°120.2°
C2CCMCH4H6120.0°120.1°
C2CCMCH5H6120.0°120.1°
CMCC2CC3CH240.2°0.0°
CMAC3AC2ACAA0.1°0.3°
CMAC3AC2AC4A179.9°179.6°
CMAC3AC2AC1A179.9°179.8°
CMAC3AC4ANA179.8°179.7°
CMAC3AC4ACHB0.2°0.7°
C3ACMAH7H8120.0°120.3°
C3ACMAH7H9120.0°120.5°
C3ACMAH8H9120.0°120.1°
CMDC2DC3DCAD0.1°0.2°
CMDC2DC1DCHD0.2°0.1°
CMDC2DC1DC3D179.9°179.8°
CMDC2DC1DND179.3°179.5°
CMDC2DC3DC4D179.9°180.0°
C2DCMDH10H11120.0°120.9°
C2DCMDH10H12120.0°120.0°
C2DCMDH11H12120.0°120.4°
CBACAAC2AH13121.1°121.7°
CBACAAC2AH14121.1°122.5°
CAACBACGAH15121.2°121.4°
CAACBACGAH16121.1°121.6°
CAACBACGAO1A47.9°94.0°
CAACBACGAO2A132.0°86.0°
CBACAAC2AC3A89.4°91.3°
CBACAAC2AC1A90.5°88.7°
CBACAAH13H14116.5°116.5°
CAACBAH15H16116.4°118.0°
C2ACAACBACGA78.0°179.3°
CAAC2AC3AC1A179.9°180.0°
CAAC2AC3AC4A179.8°179.9°
CAAC2AC1ANA179.7°179.6°
CAAC2AC1ACHA0.2°0.6°
C2ACAAH13H14116.5°118.3°
C2ACAACBAH15160.8°58.1°
C2ACAACBAH1643.1°59.1°
CBACGAO1AO2A179.9°179.9°
CGACBACAAH13160.9°57.1°
CGACBACAAH1443.1°57.6°
CGACBAH15H16116.4°117.8°
CBACGAO2AH28179.9°180.0°
O1ACGACBAH1573.2°27.3°
O1ACGACBAH16169.1°144.4°
O1ACGAO2AH280.0°0.1°
O2ACGACBAH15106.9°152.6°
O2ACGACBAH1610.8°35.6°
CBDCADC3DH17121.0°122.4°
CBDCADC3DH18121.1°121.7°
CADCBDCGDH19121.4°121.6°
CADCBDCGDH20121.4°121.5°
CADCBDCGDO1D175.6°94.0°
CADCBDCGDO2D4.5°85.9°
CBDCADC3DC2D109.3°91.4°
CBDCADC3DC4D70.5°88.8°
CBDCADH17H18116.7°116.4°
CADCBDH19H20115.7°118.1°
C3DCADCBDCGD145.3°173.7°
CADC3DC2DC1D180.0°180.0°
CADC3DC2DC4D179.8°179.8°
CADC3DC4DND179.3°179.6°
CADC3DC4DCHA0.1°0.6°
C3DCADH17H18116.7°118.0°
C3DCADCBDH1993.4°64.8°
C3DCADCBDH2023.9°52.4°
CBDCGDO1DO2D179.9°180.0°
CGDCBDCADH1793.7°63.3°
CGDCBDCADH1824.2°51.5°
CGDCBDH19H20115.6°117.6°
CBDCGDO2DH27180.0°180.0°
O1DCGDCBDH1963.0°144.4°
O1DCGDCBDH2054.2°27.4°
O1DCGDO2DH270.0°0.1°
O2DCGDCBDH19116.9°35.6°
O2DCGDCBDH20125.9°152.6°
C2AC3AC4ANA0.1°0.6°
C2AC3AC4ACHB179.9°179.6°
C3AC2AC1ANA0.2°0.4°
C3AC2AC1ACHA179.7°179.4°
C2AC3ACMAH7180.0°169.5°
C2AC3ACMAH860.0°49.8°
C2AC3ACMAH960.0°70.2°
C3AC2ACAAH1331.8°147.0°
C3AC2ACAAH14149.5°31.2°
C1AC2AC3AC4A0.0°0.1°
C2AC1ANAC4A0.2°0.8°
C2AC1ANACHA179.4°179.0°
C2AC1ANAMG179.2°172.3°
C2AC1ACHAC4D177.8°176.3°
C1AC2ACAAH13148.4°33.0°
C1AC2ACAAH1430.6°148.9°
C2AC1ACHAH262.2°5.6°
C3AC4ANACHB180.0°179.1°
C3AC4ANAC1A0.2°0.9°
C3AC4ANAMG179.2°172.0°
C3AC4ACHBC1B164.4°177.3°
C4AC3ACMAH70.1°10.1°
C4AC3ACMAH8119.9°129.8°
C4AC3ACMAH9120.1°110.3°
C3AC4ACHBH2115.6°4.0°
C4ANAC1AMG179.4°173.1°
C4ANAC1ACHA179.6°179.8°
NAC4ACHBC1B15.6°3.9°
C4ANAMGNB15.0°12.6°
C4ANAMGNC70.5°88.6°
C4ANAMGND172.6°175.8°
NAC4ACHBH21164.4°174.9°
CHBC4ANAC1A179.9°180.0°
CHBC4ANAMG0.8°7.1°
C4ACHBC1BH21180.0°178.8°
C4ACHBC1BC2B173.3°177.9°
C4ACHBC1BNB6.7°3.0°
C1ANAMGNB164.2°175.7°
C1ANAMGNC108.7°99.7°
NAC1ACHAC4D1.7°5.0°
C1ANAMGND6.6°12.5°
NAC1ACHAH26178.3°173.1°
MGNAC1ACHA0.2°6.7°
NAMGNBC1B21.2°13.4°
NAMGNBC4B177.1°177.1°
NAMGNBNC166.4°163.6°
NAMGNBND93.2°83.6°
NAMGNCC1C58.1°90.1°
NAMGNCC4C116.5°100.4°
NAMGNCND102.8°87.3°
NAMGNDC1D171.6°176.3°
NAMGNDC4D15.9°12.8°
C1ACHAC4DC3D172.1°176.6°
C1ACHAC4DND8.6°4.6°
C1ACHAC4DH26180.0°178.1°
CHBC1BC2BNB180.0°179.2°
CHBC1BC2BC3B179.5°179.7°
CHBC1BNBC4B179.1°180.0°
CHBC1BNBMG13.5°8.8°
C1BC2BC3BC4B0.1°0.1°
C2BC1BNBC4B0.8°0.7°
C2BC1BNBMG166.5°170.5°
C1BC2BCMBH1180.0°157.9°
C1BC2BCMBH260.0°37.9°
C1BC2BCMBH360.0°82.1°
C2BC1BCHBH216.7°3.3°
C1BC2BC3BH22179.9°179.6°
NBC1BC2BC3B0.5°0.5°
C1BNBC4BC3B0.9°0.7°
C1BNBC4BMG165.2°171.3°
C1BNBC4BCHC179.9°179.8°
C1BNBMGNC172.3°176.9°
C1BNBMGND114.4°96.9°
NBC1BCHBH21173.3°175.8°
C2BC3BC4BH22180.0°179.7°
C2BC3BC4BNB0.6°0.4°
C2BC3BC4BCHC180.0°179.8°
C3BC2BCMBH10.1°21.6°
C3BC2BCMBH2120.0°141.6°
C3BC2BCMBH3120.1°98.4°
C3BC4BNBCHC179.2°179.5°
C3BC4BNBMG166.0°170.6°
C3BC4BCHCC1C175.1°178.5°
C3BC4BCHCH234.9°1.8°
NBC4BCHCC1C5.7°2.1°
C4BNBMGNC10.7°13.5°
C4BNBMGND83.9°93.5°
NBC4BC3BH22179.4°179.9°
NBC4BCHCH23174.3°177.6°
CHCC4BNBMG14.7°8.8°
C4BCHCC1CH23180.0°179.7°
C4BCHCC1CC2C175.8°178.6°
C4BCHCC1CNC3.9°2.0°
CHCC4BC3BH220.0°0.4°
NBMGNCC1C2.3°14.0°
NBMGNCC4C172.3°176.5°
NBMGNCND158.6°163.4°
NBMGNDC1D96.7°93.0°
NBMGNDC4D107.6°96.1°
CHCC1CC2CNC179.8°179.4°
CHCC1CC2CC3C179.9°179.9°
CHCC1CNCC4C180.0°179.8°
CHCC1CNCMG4.3°9.2°
C1CC2CC3CC4C0.0°0.0°
C2CC1CNCC4C0.3°0.7°
C2CC1CNCMG175.4°170.3°
C1CC2CCMCH4180.0°158.5°
C1CC2CCMCH560.0°38.4°
C1CC2CCMCH660.0°81.5°
C2CC1CCHCH234.2°1.7°
C1CC2CC3CH24180.0°179.7°
NCC1CC2CC3C0.2°0.4°
C1CNCC4CC3C0.3°0.8°
C1CNCC4CMG176.2°171.4°
C1CNCC4CCHD179.7°180.0°
C1CNCMGND160.9°177.4°
NCC1CCHCH23176.1°177.7°
C2CC3CC4CH24180.0°179.6°
C2CC3CC4CNC0.2°0.5°
C2CC3CC4CCHD179.7°179.8°
C3CC2CCMCH40.2°21.2°
C3CC2CCMCH5120.2°141.2°
C3CC2CCMCH6119.8°98.8°
C3CC4CNCCHD179.4°179.3°
C3CC4CNCMG175.9°170.6°
C3CC4CCHDC1D163.9°178.4°
C3CC4CCHDH2516.1°2.0°
NCC4CCHDC1D15.5°2.4°
C4CNCMGND13.7°13.1°
NCC4CC3CH24179.8°179.9°
NCC4CCHDH25164.5°177.1°
CHDC4CNCMG3.5°8.6°
C4CCHDC1DH25180.0°179.5°
C4CCHDC1DC2D175.8°177.7°
C4CCHDC1DND3.2°2.9°
CHDC4CC3CH240.3°0.6°
NCMGNDC1D24.5°13.2°
NCMGNDC4D179.9°175.9°
CHDC1DC2DND179.1°179.5°
CHDC1DC2DC3D180.0°179.7°
CHDC1DNDC4D179.9°179.9°
CHDC1DNDMG19.6°7.9°
C1DC2DC3DC4D0.2°0.2°
C2DC1DNDC4D1.1°0.6°
C2DC1DNDMG161.4°171.5°
C1DC2DCMDH1089.9°130.2°
C1DC2DCMDH11150.1°10.2°
C1DC2DCMDH1230.1°110.0°
C2DC1DCHDH254.3°2.7°
NDC1DC2DC3D0.9°0.3°
C1DNDC4DC3D1.0°0.7°
C1DNDC4DMG160.6°172.4°
C1DNDC4DCHA179.7°179.8°
NDC1DCHDH25176.8°176.7°
C2DC3DC4DND0.5°0.6°
C2DC3DC4DCHA179.9°179.6°
C3DC2DCMDH1089.9°50.1°
C3DC2DCMDH1130.1°170.0°
C3DC2DCMDH12150.1°69.7°
C2DC3DCADH17129.7°31.0°
C2DC3DCADH1811.8°146.9°
C3DC4DNDCHA179.4°179.0°
C3DC4DNDMG161.5°171.6°
C4DC3DCADH1750.6°148.8°
C4DC3DCADH18168.5°32.9°
C3DC4DCHAH267.9°5.3°
NDC4DCHAH26171.4°173.5°
CHAC4DNDMG19.1°7.4°
H1CMBH2H3120.0°119.8°
H4CMCH5H6120.0°119.8°
H7CMAH8H9120.0°119.2°
H10CMDH11H12120.0°119.1°
H13CAACBAH1539.7°64.1°
H13CAACBAH1678.0°178.7°
H14CAACBAH1578.1°178.8°
H14CAACBAH16164.2°64.0°
H17CADCBDH1927.7°58.2°
H17CADCBDH20144.9°175.4°
H18CADCBDH19145.6°173.0°
H18CADCBDH2097.2°69.7°

259987

PDB entries from 2026-09-23

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