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SummaryGeometryRelated PDB entries

MD7

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CANCAOsing1.53Å1.57Å
CANCAWsing1.53Å1.56Å
CAOCAWsing1.53Å1.51Å
CAWCASsing1.51Å1.59Å
CASOACsing1.34Å1.38Å
CASCARdoub1.36Å1.60Å
CARCADsing1.43Å1.44Å
CARCAQsing1.47Å1.57Å
CADNAAtrip1.14Å1.15Å
CAQOABdoub1.22Å1.24Å
CAQNAPsing1.35Å1.33Å
NAPCATsing1.40Å1.33Å
CATCAKdoub1.39Å1.40ÅAromatic
CATCAJsing1.39Å1.43ÅAromatic
CAKCAMsing1.38Å1.41ÅAromatic
CAMCAVdoub1.39Å1.42ÅAromatic
CAJCALdoub1.38Å1.41ÅAromatic
CALCAVsing1.39Å1.40ÅAromatic
CAVCAUsing1.48Å1.39ÅAromatic
CAUCAHdoub1.39Å1.40ÅAromatic
CAUCAIsing1.39Å1.41ÅAromatic
CAHCAFsing1.38Å1.39ÅAromatic
CAFCAEdoub1.38Å1.40ÅAromatic
CAECAGsing1.38Å1.41ÅAromatic
CAGCAIdoub1.38Å1.41ÅAromatic
CANHANsing1.09Å1.10Å
CANHANAsing1.09Å1.10Å
CAOHAOsing1.09Å1.10Å
CAOHAOAsing1.09Å1.10Å
CAWHAWsing1.09Å1.10Å
OACHOACsing0.97Å0.95Å
NAPHNAPsing0.97Å1.00Å
CAKHAKsing1.08Å1.08Å
CAMHAMsing1.08Å1.08Å
CAJHAJsing1.08Å1.08Å
CALHALsing1.08Å1.08Å
CAHHAHsing1.08Å1.08Å
CAFHAFsing1.08Å1.08Å
CAEHAEsing1.08Å1.08Å
CAGHAGsing1.08Å1.08Å
CAIHAIsing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAOCANCAW58.0°60.0°
CANCAOCAW60.7°60.0°
CAOCANHAN132.1°117.5°
CAOCANHANA137.1°117.4°
CANCAOHAO130.5°117.5°
CANCAOHAOA135.6°117.4°
CANCAWCAO61.4°60.0°
CANCAWCAS125.3°117.5°
CAWCANHAN132.1°117.5°
CAWCANHANA137.1°117.5°
CANCAWHAW129.3°117.4°
CAOCAWCAS112.9°117.5°
CAWCAOHAO130.5°117.5°
CAWCAOHAOA135.7°117.5°
CAOCAWHAW140.0°117.5°
CAWCASOAC115.4°120.0°
CAWCASCAR129.1°120.0°
CASCAWHAW91.4°115.6°
OACCASCAR115.5°120.0°
CASOACHOAC109.5°117.0°
CASCARCAD129.1°120.0°
CASCARCAQ117.9°120.0°
CADCARCAQ112.9°120.0°
CARCADNAA171.0°180.0°
CARCAQOAB121.7°120.0°
CARCAQNAP114.1°120.0°
OABCAQNAP123.7°120.0°
CAQNAPCAT126.7°120.0°
CAQNAPHNAP116.7°120.0°
NAPCATCAK119.7°120.0°
NAPCATCAJ119.9°119.9°
CATNAPHNAP116.6°120.0°
CAKCATCAJ120.4°120.1°
CATCAKCAM116.7°120.1°
CATCAKHAK121.7°120.0°
CATCAJCAL123.1°120.1°
CATCAJHAJ118.4°120.0°
CAKCAMCAV122.5°120.0°
CAMCAKHAK121.6°120.0°
CAKCAMHAM118.8°120.0°
CAMCAVCAL121.2°119.9°
CAMCAVCAU115.7°120.1°
CAVCAMHAM118.8°120.0°
CAJCALCAV115.9°119.9°
CALCAJHAJ118.5°120.0°
CAJCALHAL122.1°120.0°
CALCAVCAU122.1°120.1°
CAVCALHAL122.1°120.0°
CAVCAUCAH112.6°120.1°
CAVCAUCAI125.7°120.1°
CAHCAUCAI120.6°119.8°
CAUCAHCAF120.5°119.9°
CAUCAHHAH119.8°120.1°
CAUCAICAG118.3°119.9°
CAUCAIHAI120.8°120.1°
CAHCAFCAE119.7°120.1°
CAFCAHHAH119.8°120.0°
CAHCAFHAF120.2°120.0°
CAFCAECAG120.1°120.3°
CAECAFHAF120.2°119.9°
CAFCAEHAE119.9°119.9°
CAECAGCAI120.4°120.1°
CAGCAEHAE119.9°119.8°
CAECAGHAG119.8°119.9°
CAICAGHAG119.8°119.9°
CAGCAIHAI120.8°120.0°
HANCANHANA73.2°115.6°
HAOCAOHAOA75.2°115.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAOCANCAWHAN120.0°107.4°
CAOCANCAWHANA126.6°107.4°
CANCAOCAWHAO120.0°107.5°
CANCAOCAWHAOA126.7°107.4°
CAOCANCAWCAS99.0°107.5°
CAOCANHANHANA139.2°145.6°
CANCAOHAOHAOA138.3°145.7°
CAOCANCAWHAW132.9°107.5°
CANCAWCASHAW142.5°145.6°
CANCAWCASOAC108.3°60.1°
CANCAWCASCAR74.8°119.9°
CAWCANHANHANA139.3°145.8°
CAOCAWCASHAW147.3°145.8°
CAOCAWCASOAC178.5°8.6°
CAOCAWCASCAR4.6°171.4°
CAWCAOHAOHAOA138.4°145.7°
CAWCASOACCAR177.3°180.0°
CAWCASCARCAD4.1°9.3°
CAWCASCARCAQ175.4°170.6°
CASCAWCANHAN141.0°145.1°
CASCAWCANHANA27.6°0.1°
CASCAWCAOHAO1.1°0.0°
CASCAWCAOHAOA114.4°145.1°
CAWCASOACHOAC29.2°174.3°
OACCASCARCAD179.0°170.7°
OACCASCARCAQ1.5°9.4°
OACCASCAWHAW34.1°154.3°
CASCARCADCAQ179.5°179.9°
CASCARCADNAA173.3°34.6°
CASCARCAQOAB176.8°7.0°
CASCARCAQNAP4.2°172.9°
CARCASCAWHAW142.8°25.7°
CARCASOACHOAC153.5°5.7°
CADCARCAQOAB2.8°172.9°
CADCARCAQNAP175.3°7.2°
CAQCARCADNAA6.2°145.4°
CARCAQOABNAP171.8°179.9°
CARCAQNAPCAT178.7°174.5°
CARCAQNAPHNAP1.3°5.7°
OABCAQNAPCAT8.9°5.4°
OABCAQNAPHNAP171.1°174.4°
CAQNAPCATHNAP180.0°179.9°
CAQNAPCATCAK27.6°139.7°
CAQNAPCATCAJ154.8°40.6°
NAPCATCAKCAJ177.7°179.7°
NAPCATCAKCAM176.5°180.0°
NAPCATCAJCAL176.6°180.0°
NAPCATCAKHAK3.5°0.1°
NAPCATCAJHAJ3.4°0.0°
CATCAKCAMHAK180.0°179.9°
CATCAKCAMCAV3.4°0.1°
CAKCATCAJCAL1.0°0.3°
CAKCATNAPHNAP152.4°40.1°
CATCAKCAMHAM176.6°179.9°
CAKCATCAJHAJ179.0°179.7°
CAJCATCAKCAM1.1°0.3°
CATCAJCALHAJ180.0°180.0°
CATCAJCALCAV3.0°0.1°
CAJCATNAPHNAP25.2°139.6°
CAJCATCAKHAK178.9°179.7°
CATCAJCALHAL177.0°180.0°
CAKCAMCAVHAM180.0°180.0°
CAKCAMCAVCAL5.6°0.2°
CAKCAMCAVCAU174.0°180.0°
CAMCAVCALCAJ5.1°0.2°
CAMCAVCALCAU167.6°179.9°
CAMCAVCAUCAH127.7°180.0°
CAMCAVCAUCAI40.6°0.2°
CAVCAMCAKHAK176.6°180.0°
CAMCAVCALHAL174.9°179.7°
CAJCALCAVHAL180.0°179.9°
CAJCALCAVCAU172.7°180.0°
CALCAVCAUCAH40.5°0.2°
CALCAVCAUCAI151.2°180.0°
CALCAVCAMHAM174.4°179.8°
CAVCALCAJHAJ177.0°179.9°
CAVCAUCAHCAI169.0°179.8°
CAVCAUCAHCAF175.5°180.0°
CAVCAUCAICAG174.3°179.7°
CAUCAVCAMHAM6.0°0.0°
CAUCAVCALHAL7.3°0.1°
CAVCAUCAHHAH4.6°0.0°
CAVCAUCAIHAI5.7°0.1°
CAUCAHCAFHAH180.0°180.0°
CAUCAHCAFCAE2.9°0.0°
CAHCAUCAICAG6.9°0.5°
CAUCAHCAFHAF177.1°180.0°
CAHCAUCAIHAI173.1°179.7°
CAICAUCAHCAF6.5°0.2°
CAUCAICAGCAE3.8°0.5°
CAUCAICAGHAI180.0°179.8°
CAICAUCAHHAH173.5°179.8°
CAUCAICAGHAG176.2°179.7°
CAHCAFCAEHAF180.0°179.9°
CAHCAFCAECAG0.1°0.0°
CAHCAFCAEHAE179.9°179.9°
CAFCAECAGHAE180.0°180.0°
CAFCAECAGCAI0.4°0.3°
CAECAFCAHHAH177.1°179.9°
CAFCAECAGHAG179.6°180.0°
CAECAGCAIHAG180.0°179.7°
CAGCAECAFHAF179.9°180.0°
CAECAGCAIHAI176.2°179.7°
CAICAGCAEHAE179.6°179.8°
HANCANCAOHAO120.0°145.0°
HANCANCAOHAOA6.8°0.1°
HANCANCAWHAW12.9°0.1°
HANACANCAOHAO6.6°0.0°
HANACANCAOHAOA106.6°145.0°
HANACANCAWHAW100.5°145.1°
HAOCAOCAWHAW121.8°145.1°
HAOACAOCAWHAW8.6°0.0°
HAKCAKCAMHAM3.4°0.0°
HAJCAJCALHAL2.9°0.0°
HAHCAHCAFHAF2.9°0.0°
HAFCAFCAEHAE0.1°0.0°
HAECAECAGHAG0.4°0.0°
HAGCAGCAIHAI3.8°0.1°

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PDB entries from 2024-07-17

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