MCY

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	sing	1.34Å	1.38Å
N1	C6	sing	1.36Å	1.36Å
N1	C1'	sing	1.46Å	1.48Å
C2	N3	sing	1.33Å	1.36Å
C2	O2	doub	1.22Å	1.23Å
N3	C4	doub	1.33Å	1.34Å
C4	C5	sing	1.41Å	1.35Å
C4	N4	sing	1.38Å	1.33Å
C5	C6	doub	1.35Å	1.34Å
C5	C5A	sing	1.51Å	1.53Å
C6	H6	sing	1.08Å	1.09Å
N4	HN41	sing	0.97Å	1.01Å
N4	HN42	sing	0.97Å	1.01Å
C1'	C2'	sing	1.54Å	1.52Å
C1'	O4'	sing	1.44Å	1.45Å
C1'	H1'	sing	1.09Å	1.09Å
C2'	C3'	sing	1.55Å	1.51Å
C2'	H2'	sing	1.09Å	1.09Å
C2'	H2''	sing	1.09Å	1.09Å
C3'	C4'	sing	1.55Å	1.52Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	H3'	sing	1.09Å	1.09Å
C4'	O4'	sing	1.45Å	1.45Å
C4'	C5'	sing	1.53Å	1.53Å
C4'	H4'	sing	1.09Å	1.09Å
O3'	HO3'	sing	0.97Å	0.95Å
C5'	O5'	sing	1.43Å	1.43Å
C5'	H5'	sing	1.09Å	1.09Å
C5'	H5''	sing	1.09Å	1.09Å
O5'	HO5'	sing	0.97Å	0.96Å
C5A	H5A1	sing	1.09Å	1.09Å
C5A	H5A2	sing	1.09Å	1.09Å
C5A	H5A3	sing	1.09Å	1.09Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N1	C6	120.5°	120.3°
C2	N1	C1'	118.0°	119.8°
N1	C2	N3	117.6°	121.1°
N1	C2	O2	120.6°	119.4°
C6	N1	C1'	121.6°	119.8°
N1	C6	C5	120.4°	119.3°
N1	C6	H6	119.7°	120.4°
N1	C1'	C2'	110.3°	109.9°
N1	C1'	O4'	111.4°	109.9°
N1	C1'	H1'	109.1°	109.8°
N3	C2	O2	121.8°	119.4°
C2	N3	C4	121.5°	120.7°
N3	C4	C5	120.2°	119.6°
N3	C4	N4	119.5°	120.2°
C5	C4	N4	120.3°	120.2°
C4	C5	C6	119.8°	119.0°
C4	C5	C5A	120.2°	120.5°
C4	N4	HN41	120.1°	120.0°
C4	N4	HN42	119.8°	120.0°
C6	C5	C5A	120.0°	120.5°
C5	C6	H6	119.8°	120.3°
C5	C5A	H5A1	109.5°	109.5°
C5	C5A	H5A2	109.5°	109.4°
C5	C5A	H5A3	109.5°	109.5°
HN41	N4	HN42	120.1°	120.0°
C2'	C1'	O4'	107.8°	107.4°
C2'	C1'	H1'	109.2°	109.9°
C1'	C2'	C3'	106.8°	104.2°
C1'	C2'	H2'	110.1°	110.5°
C1'	C2'	H2''	110.0°	110.5°
O4'	C1'	H1'	109.1°	109.9°
C1'	O4'	C4'	110.4°	106.9°
C3'	C2'	H2'	110.0°	110.4°
C3'	C2'	H2''	109.9°	110.6°
C2'	C3'	C4'	105.8°	102.1°
C2'	C3'	O3'	111.1°	110.9°
C2'	C3'	H3'	109.1°	110.9°
H2'	C2'	H2''	110.0°	110.5°
C4'	C3'	O3'	111.4°	111.0°
C4'	C3'	H3'	109.3°	110.9°
C3'	C4'	O4'	108.0°	103.6°
C3'	C4'	C5'	110.8°	110.6°
C3'	C4'	H4'	109.1°	110.6°
O3'	C3'	H3'	110.0°	110.8°
C3'	O3'	HO3'	111.1°	106.8°
O4'	C4'	C5'	110.8°	110.8°
O4'	C4'	H4'	108.9°	110.5°
C5'	C4'	H4'	109.2°	110.5°
C4'	C5'	O5'	111.7°	109.5°
C4'	C5'	H5'	109.1°	109.5°
C4'	C5'	H5''	109.1°	109.5°
O5'	C5'	H5'	108.9°	109.4°
O5'	C5'	H5''	109.0°	109.4°
C5'	O5'	HO5'	107.4°	106.8°
H5'	C5'	H5''	109.0°	109.5°
H5A1	C5A	H5A2	109.4°	109.4°
H5A1	C5A	H5A3	109.4°	109.6°
H5A2	C5A	H5A3	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	N1	C6	C1'	178.0°	180.0°
N1	C2	N3	O2	179.8°	179.9°
N1	C2	N3	C4	0.2°	0.3°
C2	N1	C6	C5	0.4°	0.1°
C2	N1	C6	H6	179.3°	180.0°
C2	N1	C1'	C2'	103.6°	59.7°
C2	N1	C1'	O4'	136.7°	58.3°
C2	N1	C1'	H1'	16.3°	179.3°
C6	N1	C2	N3	0.4°	0.1°
C6	N1	C2	O2	179.4°	180.0°
N1	C6	C5	C4	0.3°	0.2°
N1	C6	C5	H6	179.8°	180.0°
N1	C6	C5	C5A	179.6°	179.9°
C6	N1	C1'	C2'	74.5°	120.3°
C6	N1	C1'	O4'	45.2°	121.7°
C6	N1	C1'	H1'	165.6°	0.6°
C1'	N1	C2	N3	177.7°	180.0°
C1'	N1	C2	O2	2.5°	0.0°
C1'	N1	C6	C5	177.6°	180.0°
C1'	N1	C6	H6	2.6°	0.0°
N1	C1'	C2'	O4'	121.8°	119.6°
N1	C1'	C2'	H1'	119.8°	121.0°
N1	C1'	O4'	H1'	120.5°	121.0°
N1	C1'	C2'	C3'	116.3°	121.5°
N1	C1'	C2'	H2'	3.1°	119.9°
N1	C1'	C2'	H2''	124.5°	2.8°
N1	C1'	O4'	C4'	122.4°	145.8°
C2	N3	C4	C5	0.0°	0.6°
C2	N3	C4	N4	179.4°	180.0°
O2	C2	N3	C4	179.6°	179.7°
N3	C4	C5	N4	179.4°	179.4°
N3	C4	C5	C6	0.0°	0.6°
N3	C4	C5	C5A	179.9°	179.7°
N3	C4	N4	HN41	179.5°	0.1°
N3	C4	N4	HN42	0.6°	180.0°
C4	C5	C6	C5A	179.9°	179.7°
C4	C5	C6	H6	179.5°	179.7°
C5	C4	N4	HN41	0.1°	179.4°
C5	C4	N4	HN42	179.9°	0.6°
C4	C5	C5A	H5A1	35.1°	0.3°
C4	C5	C5A	H5A2	84.8°	119.7°
C4	C5	C5A	H5A3	155.1°	120.4°
N4	C4	C5	C6	179.5°	180.0°
N4	C4	C5	C5A	0.4°	0.3°
C4	N4	HN41	HN42	179.9°	180.0°
C6	C5	C5A	H5A1	145.0°	179.9°
C6	C5	C5A	H5A2	95.0°	60.0°
C6	C5	C5A	H5A3	25.0°	59.9°
C5A	C5	C6	H6	0.6°	0.0°
C5	C5A	H5A1	H5A2	120.0°	119.9°
C5	C5A	H5A1	H5A3	120.0°	120.1°
C5	C5A	H5A2	H5A3	120.1°	120.0°
C2'	C1'	O4'	H1'	118.5°	119.5°
C1'	C2'	C3'	H2'	119.4°	118.7°
C1'	C2'	C3'	H2''	119.3°	118.7°
C1'	C2'	H2'	H2''	121.3°	122.6°
C1'	C2'	C3'	C4'	9.8°	20.8°
C1'	C2'	C3'	O3'	130.8°	139.1°
C1'	C2'	C3'	H3'	107.8°	97.3°
C2'	C1'	O4'	C4'	1.3°	26.3°
O4'	C1'	C2'	C3'	5.5°	2.0°
O4'	C1'	C2'	H2'	124.9°	120.6°
O4'	C1'	C2'	H2''	113.7°	116.8°
C1'	O4'	C4'	C3'	7.6°	39.9°
C1'	O4'	C4'	C5'	129.2°	158.5°
C1'	O4'	C4'	H4'	110.8°	78.7°
H1'	C1'	C2'	C3'	123.9°	117.5°
H1'	C1'	C2'	H2'	116.7°	1.1°
H1'	C1'	C2'	H2''	4.6°	123.7°
H1'	C1'	O4'	C4'	117.1°	93.2°
C3'	C2'	H2'	H2''	121.2°	122.7°
C2'	C3'	C4'	O3'	120.9°	118.3°
C2'	C3'	C4'	H3'	117.4°	118.1°
C2'	C3'	O3'	H3'	121.0°	123.6°
C2'	C3'	C4'	O4'	10.7°	36.9°
C2'	C3'	C4'	C5'	132.3°	155.6°
C2'	C3'	C4'	H4'	107.5°	81.5°
C2'	C3'	O3'	HO3'	180.0°	61.4°
H2'	C2'	C3'	C4'	129.2°	97.8°
H2'	C2'	C3'	O3'	109.7°	20.5°
H2'	C2'	C3'	H3'	11.7°	144.0°
H2''	C2'	C3'	C4'	109.5°	139.5°
H2''	C2'	C3'	O3'	11.5°	102.2°
H2''	C2'	C3'	H3'	133.0°	21.4°
C4'	C3'	O3'	H3'	121.3°	123.6°
C3'	C4'	O4'	C5'	121.5°	118.6°
C3'	C4'	O4'	H4'	118.4°	118.5°
C3'	C4'	C5'	H4'	120.2°	122.9°
C4'	C3'	O3'	HO3'	62.3°	174.2°
C3'	C4'	C5'	O5'	65.3°	180.0°
C3'	C4'	C5'	H5'	174.3°	60.0°
C3'	C4'	C5'	H5''	55.3°	60.0°
O3'	C3'	C4'	O4'	131.6°	155.2°
O3'	C3'	C4'	C5'	106.8°	86.1°
O3'	C3'	C4'	H4'	13.4°	36.7°
H3'	C3'	C4'	O4'	106.7°	81.3°
H3'	C3'	C4'	C5'	14.9°	37.5°
H3'	C3'	C4'	H4'	135.1°	160.3°
H3'	C3'	O3'	HO3'	59.0°	62.2°
O4'	C4'	C5'	H4'	119.9°	122.8°
O4'	C4'	C5'	O5'	54.6°	65.7°
O4'	C4'	C5'	H5'	65.9°	174.3°
O4'	C4'	C5'	H5''	175.2°	54.2°
C4'	C5'	O5'	H5'	120.5°	120.0°
C4'	C5'	O5'	H5''	120.7°	120.0°
C4'	C5'	H5'	H5''	119.1°	120.1°
C4'	C5'	O5'	HO5'	156.2°	180.0°
H4'	C4'	C5'	O5'	174.5°	57.1°
H4'	C4'	C5'	H5'	54.1°	62.9°
H4'	C4'	C5'	H5''	64.9°	177.1°
O5'	C5'	H5'	H5''	118.8°	119.9°
H5'	C5'	O5'	HO5'	35.7°	60.0°
H5''	C5'	O5'	HO5'	83.2°	60.0°
H5A1	C5A	H5A2	H5A3	119.9°	120.1°

Definition date:	2000-06-01
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1BAE