Obsolete: MAD

MAD was replaced with 1MA on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP1	sing	1.61Å	1.49Å
P	OP2	doub	1.48Å	1.48Å
P	O5'	sing	1.61Å	1.60Å
P	OXT	sing	1.61Å	1.60Å
OP1	H1P	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.45Å
C5'	C4'	sing	1.53Å	1.51Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.54Å	1.53Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.41Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HA	sing	0.97Å	0.95Å
C2'	O2'	sing	1.43Å	1.42Å
C2'	C1'	sing	1.55Å	1.53Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HB	sing	0.97Å	0.95Å
C1'	N9	sing	1.46Å	1.46Å
C1'	H1'	sing	1.09Å	1.10Å
N9	C8	sing	1.37Å	1.38Å	Aromatic
N9	C4	sing	1.36Å	1.37Å	Aromatic
C8	N7	doub	1.31Å	1.31Å	Aromatic
C8	H8	sing	1.08Å	1.08Å
N7	C5	sing	1.33Å	1.39Å	Aromatic
C5	C6	sing	1.47Å	1.40Å
C5	C4	doub	1.41Å	1.38Å	Aromatic
C6	N6	doub	1.31Å	1.34Å
C6	N1	sing	1.40Å	1.35Å
N6	H6	sing	0.97Å	1.00Å
N1	CM1	sing	1.46Å	1.49Å
N1	C2	sing	1.36Å	1.33Å
CM1	HM11	sing	1.09Å	1.10Å
CM1	HM12	sing	1.09Å	1.10Å
CM1	HM13	sing	1.09Å	1.10Å
C2	N3	doub	1.31Å	1.33Å
C2	H2	sing	1.08Å	1.08Å
N3	C4	sing	1.34Å	1.35Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP2	119.6°	109.4°
OP1	P	O5'	109.5°	109.5°
OP1	P	OXT	108.8°	109.5°
P	OP1	H1P	109.5°	114.0°
OP2	P	O5'	107.3°	109.5°
OP2	P	OXT	106.4°	109.5°
O5'	P	OXT	104.2°	109.5°
P	O5'	C5'	121.4°	123.0°
P	OXT	HXT	109.5°	114.0°
O5'	C5'	C4'	110.2°	109.5°
O5'	C5'	H5'	109.3°	109.5°
O5'	C5'	H5''	109.3°	109.5°
C4'	C5'	H5'	109.3°	109.4°
C4'	C5'	H5''	109.3°	109.4°
C5'	C4'	O4'	107.9°	109.9°
C5'	C4'	C3'	112.7°	109.9°
C5'	C4'	H4'	110.0°	109.9°
H5'	C5'	H5''	109.5°	109.5°
O4'	C4'	C3'	105.6°	107.3°
O4'	C4'	H4'	110.9°	109.9°
C4'	O4'	C1'	109.9°	107.0°
C3'	C4'	H4'	109.8°	110.0°
C4'	C3'	O3'	110.4°	110.5°
C4'	C3'	C2'	103.0°	104.2°
C4'	C3'	H3'	110.5°	110.5°
O4'	C1'	C2'	107.8°	103.5°
O4'	C1'	N9	108.1°	110.6°
O4'	C1'	H1'	109.2°	110.6°
O3'	C3'	C2'	109.9°	110.5°
O3'	C3'	H3'	112.1°	110.4°
C3'	O3'	HA	109.5°	114.0°
C2'	C3'	H3'	110.6°	110.6°
C3'	C2'	O2'	112.8°	110.9°
C3'	C2'	C1'	101.5°	102.1°
C3'	C2'	H2'	109.6°	110.9°
O2'	C2'	C1'	111.9°	110.9°
O2'	C2'	H2'	111.1°	110.8°
C2'	O2'	HB	109.5°	114.0°
C1'	C2'	H2'	109.5°	110.9°
C2'	C1'	N9	115.4°	110.7°
C2'	C1'	H1'	107.7°	110.6°
N9	C1'	H1'	108.5°	110.7°
C1'	N9	C8	130.0°	126.3°
C1'	N9	C4	124.3°	126.3°
C8	N9	C4	105.8°	107.4°
N9	C8	N7	113.7°	109.8°
N9	C8	H8	123.1°	125.1°
N9	C4	C5	106.0°	105.9°
N9	C4	N3	126.9°	133.4°
N7	C8	H8	123.2°	125.1°
C8	N7	C5	103.8°	109.0°
N7	C5	C6	132.5°	133.5°
N7	C5	C4	110.7°	107.8°
C6	C5	C4	116.8°	118.7°
C5	C6	N6	123.8°	123.7°
C5	C6	N1	117.4°	112.7°
C5	C4	N3	127.0°	120.6°
N6	C6	N1	118.9°	123.6°
C6	N6	H6	112.0°	120.0°
C6	N1	CM1	122.1°	120.5°
C6	N1	C2	119.2°	118.9°
CM1	N1	C2	118.7°	120.6°
N1	CM1	HM11	109.5°	109.5°
N1	CM1	HM12	109.5°	109.5°
N1	CM1	HM13	109.5°	109.5°
N1	C2	N3	129.0°	123.4°
N1	C2	H2	115.5°	118.3°
HM11	CM1	HM12	109.5°	109.5°
HM11	CM1	HM13	109.5°	109.5°
HM12	CM1	HM13	109.5°	109.4°
N3	C2	H2	115.5°	118.3°
C2	N3	C4	110.6°	119.3°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP2	O5'	125.4°	120.0°
OP1	P	OP2	OXT	123.5°	120.0°
OP1	P	O5'	OXT	116.2°	120.0°
OP1	P	O5'	C5'	39.3°	65.0°
OP1	P	OXT	HXT	130.1°	59.9°
OP2	P	O5'	OXT	112.5°	120.0°
OP2	P	OP1	H1P	0.0°	180.0°
OP2	P	O5'	C5'	170.6°	55.0°
OP2	P	OXT	HXT	0.0°	60.0°
O5'	P	OP1	H1P	124.4°	59.9°
P	O5'	C5'	C4'	109.1°	180.0°
P	O5'	C5'	H5'	11.0°	60.0°
P	O5'	C5'	H5''	130.9°	60.1°
O5'	P	OXT	HXT	113.2°	180.0°
OXT	P	OP1	H1P	122.4°	60.1°
OXT	P	O5'	C5'	76.9°	175.0°
O5'	C5'	C4'	H5'	120.1°	120.1°
O5'	C5'	C4'	H5''	120.1°	120.0°
O5'	C5'	H5'	H5''	119.7°	120.1°
O5'	C5'	C4'	O4'	56.0°	66.5°
O5'	C5'	C4'	C3'	60.2°	175.7°
O5'	C5'	C4'	H4'	177.1°	54.5°
C4'	C5'	H5'	H5''	119.7°	119.9°
C5'	C4'	O4'	C3'	120.7°	119.5°
C5'	C4'	O4'	H4'	120.5°	121.0°
C5'	C4'	C3'	H4'	122.9°	121.1°
C5'	C4'	O4'	C1'	109.4°	145.9°
C5'	C4'	C3'	O3'	154.1°	119.8°
C5'	C4'	C3'	C2'	88.5°	121.5°
C5'	C4'	C3'	H3'	29.6°	2.6°
H5'	C5'	C4'	O4'	176.1°	53.6°
H5'	C5'	C4'	C3'	59.9°	64.2°
H5'	C5'	C4'	H4'	62.8°	174.6°
H5''	C5'	C4'	O4'	64.1°	173.6°
H5''	C5'	C4'	C3'	179.7°	55.7°
H5''	C5'	C4'	H4'	57.0°	65.4°
O4'	C4'	C3'	H4'	119.6°	119.5°
O4'	C4'	C3'	O3'	88.4°	120.7°
O4'	C4'	C3'	C2'	29.0°	2.0°
O4'	C4'	C3'	H3'	147.1°	116.8°
C4'	O4'	C1'	C2'	11.3°	40.0°
C4'	O4'	C1'	N9	136.6°	158.6°
C4'	O4'	C1'	H1'	105.4°	78.5°
C3'	C4'	O4'	C1'	11.2°	26.5°
C4'	C3'	O3'	C2'	113.0°	114.8°
C4'	C3'	O3'	H3'	123.6°	122.5°
C4'	C3'	C2'	H3'	118.1°	118.7°
C4'	C3'	O3'	HA	180.0°	180.0°
C4'	C3'	C2'	O2'	154.1°	139.1°
C4'	C3'	C2'	C1'	34.3°	20.9°
C4'	C3'	C2'	H2'	81.5°	97.3°
H4'	C4'	O4'	C1'	130.1°	93.1°
H4'	C4'	C3'	O3'	31.3°	1.2°
H4'	C4'	C3'	C2'	148.6°	117.4°
H4'	C4'	C3'	H3'	93.3°	123.7°
O4'	C1'	C2'	C3'	28.9°	37.0°
O4'	C1'	C2'	O2'	149.4°	155.2°
O4'	C1'	C2'	N9	120.9°	118.5°
O4'	C1'	C2'	H1'	117.7°	118.5°
O4'	C1'	C2'	H2'	87.0°	81.2°
O4'	C1'	N9	H1'	118.4°	122.9°
O4'	C1'	N9	C8	122.4°	23.7°
O4'	C1'	N9	C4	58.4°	156.7°
O3'	C3'	C2'	H3'	124.3°	122.6°
O3'	C3'	C2'	O2'	36.5°	20.5°
O3'	C3'	C2'	C1'	83.4°	97.8°
O3'	C3'	C2'	H2'	160.9°	144.0°
C2'	C3'	O3'	HA	67.0°	65.2°
C3'	C2'	O2'	C1'	113.6°	112.8°
C3'	C2'	O2'	H2'	123.6°	123.6°
C3'	C2'	C1'	H2'	115.8°	118.2°
C3'	C2'	O2'	HB	180.0°	61.3°
C3'	C2'	C1'	N9	149.8°	155.5°
C3'	C2'	C1'	H1'	88.8°	81.5°
H3'	C3'	O3'	HA	56.4°	57.5°
H3'	C3'	C2'	O2'	87.8°	102.2°
H3'	C3'	C2'	C1'	152.4°	139.6°
H3'	C3'	C2'	H2'	36.6°	21.4°
O2'	C2'	C1'	H2'	123.7°	123.6°
O2'	C2'	C1'	N9	89.7°	86.3°
O2'	C2'	C1'	H1'	31.7°	36.7°
C1'	C2'	O2'	HB	66.4°	174.1°
C2'	C1'	N9	H1'	120.9°	123.0°
C2'	C1'	N9	C8	1.7°	90.4°
C2'	C1'	N9	C4	179.1°	89.2°
H2'	C2'	O2'	HB	56.4°	62.2°
H2'	C2'	C1'	N9	34.0°	37.3°
H2'	C2'	C1'	H1'	155.3°	160.3°
C1'	N9	C8	C4	179.3°	179.7°
C1'	N9	C8	N7	178.6°	179.9°
C1'	N9	C8	H8	1.4°	0.0°
C1'	N9	C4	C5	178.7°	179.7°
C1'	N9	C4	N3	1.0°	1.2°
H1'	C1'	N9	C8	119.2°	146.6°
H1'	C1'	N9	C4	59.9°	33.8°
N9	C8	N7	H8	180.0°	179.9°
N9	C8	N7	C5	0.4°	0.0°
C8	N9	C4	C5	0.7°	0.6°
C8	N9	C4	N3	179.7°	179.1°
C4	N9	C8	N7	0.7°	0.4°
C4	N9	C8	H8	179.3°	179.6°
N9	C4	C5	N7	0.5°	0.6°
N9	C4	C5	C6	179.4°	179.4°
N9	C4	C5	N3	179.6°	178.8°
N9	C4	N3	C2	179.4°	173.0°
C8	N7	C5	C6	179.8°	179.6°
C8	N7	C5	C4	0.1°	0.3°
H8	C8	N7	C5	179.6°	180.0°
N7	C5	C6	C4	179.9°	180.0°
N7	C5	C6	N6	0.1°	17.8°
N7	C5	C6	N1	180.0°	162.2°
N7	C5	C4	N3	179.9°	179.3°
C5	C6	N6	N1	179.9°	180.0°
C5	C6	N6	H6	179.9°	180.0°
C5	C6	N1	CM1	179.8°	150.6°
C5	C6	N1	C2	0.1°	29.4°
C6	C5	C4	N3	0.2°	0.6°
C4	C5	C6	N6	180.0°	162.2°
C4	C5	C6	N1	0.1°	17.8°
C5	C4	N3	C2	0.2°	8.7°
N6	C6	N1	CM1	0.3°	29.4°
N6	C6	N1	C2	179.9°	150.6°
N1	C6	N6	H6	0.0°	0.0°
C6	N1	CM1	C2	179.9°	180.0°
C6	N1	CM1	HM11	180.0°	90.0°
C6	N1	CM1	HM12	60.0°	150.0°
C6	N1	CM1	HM13	60.0°	30.0°
C6	N1	C2	N3	0.1°	24.0°
C6	N1	C2	H2	179.9°	156.0°
N1	CM1	HM11	HM12	120.0°	120.0°
N1	CM1	HM11	HM13	120.0°	120.1°
N1	CM1	HM12	HM13	120.0°	120.0°
CM1	N1	C2	N3	179.8°	156.0°
CM1	N1	C2	H2	0.3°	24.0°
C2	N1	CM1	HM11	0.1°	90.0°
C2	N1	CM1	HM12	120.1°	30.0°
C2	N1	CM1	HM13	119.9°	150.0°
N1	C2	N3	H2	180.0°	180.0°
N1	C2	N3	C4	0.0°	3.4°
HM11	CM1	HM12	HM13	120.0°	120.0°
H2	C2	N3	C4	180.0°	176.6°

Definition date:	2002-08-28
Last modified:	2015-08-19
Release status:	OBS
Processing site:	EBI
Replaced by:	1MA
Derived from:	1H3E