MA7
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C2 | N3 | doub | 1.35Å | 1.33Å | Aromatic |
C2 | N1 | sing | 1.37Å | 1.34Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.08Å | |
C4 | C5 | doub | 1.38Å | 1.38Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.38Å | Aromatic |
C4 | N3 | sing | 1.34Å | 1.35Å | Aromatic |
C5 | C6 | sing | 1.38Å | 1.40Å | Aromatic |
C5 | N7 | sing | 1.37Å | 1.39Å | Aromatic |
C6 | N1 | doub | 1.37Å | 1.35Å | Aromatic |
C6 | N6 | sing | 1.41Å | 1.34Å | |
C8 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
C8 | N7 | doub | 1.32Å | 1.31Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
P | OP1 | doub | 1.50Å | 1.48Å | |
P | OP2 | sing | 1.62Å | 1.48Å | |
P | O5' | sing | 1.62Å | 1.59Å | |
P | OP3 | sing | 1.62Å | 84.35Å | |
OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
O5' | C5' | sing | 1.42Å | 1.42Å | |
N9 | C1' | sing | 1.46Å | 1.46Å | |
N1 | CN | sing | 1.46Å | 1.49Å | |
N6 | H61 | sing | 1.00Å | 1.00Å | |
N6 | H62 | sing | 1.00Å | 1.00Å | |
CN | HN1 | sing | 1.09Å | 1.10Å | |
CN | HN2 | sing | 1.09Å | 1.10Å | |
CN | HN3 | sing | 1.09Å | 1.10Å | |
C2' | C1' | sing | 1.52Å | 1.52Å | |
C2' | C3' | sing | 1.51Å | 1.52Å | |
C2' | H2' | sing | 1.10Å | 1.10Å | |
C2' | H2'' | sing | 1.09Å | 1.10Å | |
C5' | C4' | sing | 1.52Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C3' | sing | 1.52Å | 1.53Å | |
C4' | H4' | sing | 1.10Å | 1.10Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C1' | H1' | sing | 1.10Å | 1.10Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N3 | C2 | N1 | 129.2° | 124.6° |
N3 | C2 | H2 | 115.4° | 118.2° |
C2 | N3 | C4 | 110.6° | 113.6° |
N1 | C2 | H2 | 115.4° | 117.1° |
C2 | N1 | C6 | 118.9° | 118.9° |
C2 | N1 | CN | 120.9° | 119.4° |
C5 | C4 | N9 | 105.8° | 105.2° |
C5 | C4 | N3 | 126.7° | 127.3° |
C4 | C5 | C6 | 117.1° | 115.6° |
C4 | C5 | N7 | 110.7° | 111.0° |
N9 | C4 | N3 | 127.5° | 127.5° |
C4 | N9 | C8 | 105.7° | 106.9° |
C4 | N9 | C1' | 127.1° | 127.0° |
C6 | C5 | N7 | 132.2° | 133.3° |
C5 | C6 | N1 | 117.6° | 119.9° |
C5 | C6 | N6 | 123.8° | 121.0° |
C5 | N7 | C8 | 103.9° | 104.7° |
N1 | C6 | N6 | 118.6° | 119.1° |
C6 | N1 | CN | 120.2° | 121.7° |
C6 | N6 | H61 | 125.5° | 119.4° |
C6 | N6 | H62 | 109.0° | 119.4° |
N9 | C8 | N7 | 113.9° | 112.2° |
N9 | C8 | H8 | 123.0° | 122.2° |
C8 | N9 | C1' | 127.2° | 126.2° |
N7 | C8 | H8 | 123.1° | 125.6° |
OP1 | P | OP2 | 119.6° | 115.3° |
OP1 | P | O5' | 109.8° | 115.0° |
OP1 | P | OP3 | 103.6° | 115.0° |
OP2 | P | O5' | 109.8° | 103.7° |
OP2 | P | OP3 | 106.0° | 103.3° |
P | OP2 | HOP2 | 109.5° | 118.9° |
O5' | P | OP3 | 11.9° | 102.9° |
P | O5' | C5' | 121.1° | 118.5° |
P | OP3 | HOP3 | 103.6° | 118.9° |
O5' | C5' | C4' | 109.8° | 108.7° |
O5' | C5' | H5' | 109.3° | 109.2° |
O5' | C5' | H5'' | 109.4° | 109.2° |
N9 | C1' | C2' | 114.3° | 114.3° |
N9 | C1' | O4' | 107.4° | 110.0° |
N9 | C1' | H1' | 106.6° | 105.9° |
N1 | CN | HN1 | 109.5° | 108.9° |
N1 | CN | HN2 | 109.5° | 110.4° |
N1 | CN | HN3 | 109.5° | 109.7° |
H61 | N6 | H62 | 125.5° | 120.9° |
HN1 | CN | HN2 | 109.5° | 109.5° |
HN1 | CN | HN3 | 109.5° | 109.7° |
HN2 | CN | HN3 | 109.5° | 108.6° |
C1' | C2' | C3' | 102.1° | 101.6° |
C1' | C2' | H2' | 113.6° | 110.5° |
C1' | C2' | H2'' | 112.0° | 111.7° |
C2' | C1' | O4' | 106.0° | 106.7° |
C2' | C1' | H1' | 107.9° | 111.7° |
C3' | C2' | H2' | 113.6° | 110.0° |
C3' | C2' | H2'' | 112.0° | 114.2° |
C2' | C3' | C4' | 102.6° | 103.2° |
C2' | C3' | O3' | 109.7° | 108.4° |
C2' | C3' | H3' | 113.8° | 113.7° |
H2' | C2' | H2'' | 103.9° | 108.7° |
C4' | C5' | H5' | 109.3° | 110.1° |
C4' | C5' | H5'' | 109.4° | 110.1° |
C5' | C4' | O4' | 108.6° | 108.0° |
C5' | C4' | C3' | 113.6° | 112.7° |
C5' | C4' | H4' | 106.2° | 109.4° |
H5' | C5' | H5'' | 109.7° | 109.6° |
O4' | C4' | C3' | 105.7° | 106.8° |
O4' | C4' | H4' | 113.9° | 107.7° |
C4' | O4' | C1' | 110.4° | 108.7° |
C3' | C4' | H4' | 109.0° | 112.0° |
C4' | C3' | O3' | 109.7° | 109.6° |
C4' | C3' | H3' | 113.8° | 114.0° |
O4' | C1' | H1' | 114.9° | 108.1° |
O3' | C3' | H3' | 107.2° | 107.8° |
C3' | O3' | HO3' | 109.5° | 106.6° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N3 | C2 | N1 | H2 | 180.0° | 180.0° |
C2 | N3 | C4 | C5 | 0.1° | 0.1° |
C2 | N3 | C4 | N9 | 179.4° | 180.0° |
N3 | C2 | N1 | C6 | 0.4° | 0.0° |
N3 | C2 | N1 | CN | 180.0° | 179.9° |
N1 | C2 | N3 | C4 | 0.3° | 0.1° |
C2 | N1 | C6 | C5 | 0.0° | 0.0° |
C2 | N1 | C6 | CN | 179.7° | 180.0° |
C2 | N1 | C6 | N6 | 179.7° | 179.9° |
C2 | N1 | CN | HN1 | 39.1° | 8.9° |
C2 | N1 | CN | HN2 | 159.1° | 129.2° |
C2 | N1 | CN | HN3 | 80.9° | 111.2° |
H2 | C2 | N3 | C4 | 179.7° | 179.9° |
H2 | C2 | N1 | C6 | 179.6° | 179.9° |
H2 | C2 | N1 | CN | 0.0° | 0.1° |
C5 | C4 | N9 | N3 | 179.6° | 179.9° |
C4 | C5 | C6 | N7 | 179.9° | 180.0° |
C4 | C5 | C6 | N1 | 0.3° | 0.0° |
C4 | C5 | C6 | N6 | 180.0° | 179.9° |
C5 | C4 | N9 | C8 | 1.1° | 0.0° |
C4 | C5 | N7 | C8 | 0.3° | 0.0° |
C5 | C4 | N9 | C1' | 178.0° | 179.9° |
N9 | C4 | C5 | C6 | 179.2° | 180.0° |
N9 | C4 | C5 | N7 | 0.9° | 0.0° |
C4 | N9 | C8 | C1' | 179.1° | 180.0° |
C4 | N9 | C8 | N7 | 1.0° | 0.0° |
C4 | N9 | C8 | H8 | 179.0° | 179.9° |
C4 | N9 | C1' | C2' | 128.5° | 93.5° |
C4 | N9 | C1' | O4' | 114.2° | 146.5° |
C4 | N9 | C1' | H1' | 9.3° | 30.0° |
N3 | C4 | C5 | C6 | 0.4° | 0.0° |
N3 | C4 | C5 | N7 | 179.5° | 180.0° |
N3 | C4 | N9 | C8 | 179.3° | 180.0° |
N3 | C4 | N9 | C1' | 1.6° | 0.0° |
C5 | C6 | N1 | N6 | 179.7° | 179.9° |
C6 | C5 | N7 | C8 | 179.8° | 180.0° |
C5 | C6 | N1 | CN | 179.7° | 180.0° |
C5 | C6 | N6 | H61 | 179.8° | 42.2° |
C5 | C6 | N6 | H62 | 0.2° | 144.2° |
N7 | C5 | C6 | N1 | 179.6° | 180.0° |
N7 | C5 | C6 | N6 | 0.1° | 0.1° |
C5 | N7 | C8 | N9 | 0.4° | 0.0° |
C5 | N7 | C8 | H8 | 179.6° | 179.9° |
N1 | C6 | N6 | H61 | 0.2° | 137.9° |
N1 | C6 | N6 | H62 | 179.8° | 35.7° |
C6 | N1 | CN | HN1 | 140.5° | 171.1° |
C6 | N1 | CN | HN2 | 20.6° | 50.8° |
C6 | N1 | CN | HN3 | 99.4° | 68.9° |
N6 | C6 | N1 | CN | 0.0° | 0.1° |
C6 | N6 | H61 | H62 | 180.0° | 173.6° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
C8 | N9 | C1' | C2' | 52.6° | 86.6° |
C8 | N9 | C1' | O4' | 64.6° | 33.4° |
C8 | N9 | C1' | H1' | 171.8° | 150.0° |
N7 | C8 | N9 | C1' | 178.1° | 179.9° |
H8 | C8 | N9 | C1' | 1.9° | 0.1° |
OP1 | P | OP2 | O5' | 128.2° | 126.6° |
OP1 | P | OP2 | OP3 | 116.4° | 126.3° |
OP1 | P | O5' | OP3 | 60.3° | 125.8° |
OP1 | P | OP2 | HOP2 | 88.3° | 48.8° |
OP1 | P | O5' | C5' | 175.9° | 180.0° |
OP1 | P | OP3 | HOP3 | 180.0° | 48.0° |
OP2 | P | O5' | OP3 | 73.2° | 107.4° |
OP2 | P | O5' | C5' | 50.6° | 53.2° |
OP2 | P | OP3 | HOP3 | 53.2° | 78.5° |
O5' | P | OP2 | HOP2 | 143.5° | 175.4° |
P | O5' | C5' | C4' | 148.1° | 180.0° |
P | O5' | C5' | H5' | 92.0° | 59.9° |
P | O5' | C5' | H5'' | 28.1° | 59.9° |
O5' | P | OP3 | HOP3 | 57.2° | 173.9° |
OP3 | P | OP2 | HOP2 | 155.3° | 77.5° |
OP3 | P | O5' | C5' | 123.8° | 54.2° |
O5' | C5' | C4' | H5' | 119.9° | 119.6° |
O5' | C5' | C4' | H5'' | 120.0° | 119.5° |
O5' | C5' | H5' | H5'' | 119.9° | 119.6° |
O5' | C5' | C4' | O4' | 59.3° | 61.8° |
O5' | C5' | C4' | C3' | 58.0° | 179.5° |
O5' | C5' | C4' | H4' | 177.8° | 55.2° |
N9 | C1' | C2' | O4' | 118.1° | 121.8° |
N9 | C1' | C2' | H1' | 118.4° | 120.3° |
N9 | C1' | C2' | C3' | 150.2° | 154.5° |
N9 | C1' | C2' | H2' | 27.5° | 37.8° |
N9 | C1' | C2' | H2'' | 89.8° | 83.3° |
N9 | C1' | O4' | C4' | 138.1° | 141.8° |
N9 | C1' | O4' | H1' | 118.3° | 115.2° |
N1 | CN | HN1 | HN2 | 120.0° | 120.8° |
N1 | CN | HN1 | HN3 | 120.0° | 120.1° |
N1 | CN | HN2 | HN3 | 120.0° | 120.3° |
HN1 | CN | HN2 | HN3 | 120.0° | 119.8° |
C1' | C2' | C3' | H2' | 122.6° | 117.0° |
C1' | C2' | C3' | H2'' | 120.0° | 120.4° |
C1' | C2' | H2' | H2'' | 121.9° | 122.9° |
C2' | C1' | O4' | C4' | 15.5° | 17.3° |
C1' | C2' | C3' | C4' | 35.6° | 34.8° |
C2' | C1' | O4' | H1' | 119.1° | 120.3° |
C1' | C2' | C3' | O3' | 81.0° | 81.3° |
C1' | C2' | C3' | H3' | 159.0° | 158.8° |
C3' | C2' | H2' | H2'' | 122.0° | 125.7° |
C2' | C3' | C4' | C5' | 91.6° | 92.6° |
C2' | C3' | C4' | O4' | 27.4° | 25.9° |
C2' | C3' | C4' | O3' | 116.5° | 115.3° |
C2' | C3' | C4' | H3' | 123.4° | 123.7° |
C2' | C3' | C4' | H4' | 150.3° | 143.6° |
C3' | C2' | C1' | O4' | 32.1° | 32.7° |
C3' | C2' | C1' | H1' | 91.5° | 85.2° |
C2' | C3' | O3' | H3' | 124.0° | 123.5° |
C2' | C3' | O3' | HO3' | 40.7° | 65.3° |
H2' | C2' | C3' | C4' | 87.1° | 82.2° |
H2' | C2' | C1' | O4' | 90.6° | 84.0° |
H2' | C2' | C1' | H1' | 145.9° | 158.1° |
H2' | C2' | C3' | O3' | 156.4° | 161.6° |
H2' | C2' | C3' | H3' | 36.3° | 41.7° |
H2'' | C2' | C3' | C4' | 155.6° | 155.2° |
H2'' | C2' | C1' | O4' | 152.1° | 154.9° |
H2'' | C2' | C1' | H1' | 28.5° | 37.0° |
H2'' | C2' | C3' | O3' | 39.0° | 39.1° |
H2'' | C2' | C3' | H3' | 81.1° | 80.8° |
C4' | C5' | H5' | H5'' | 119.9° | 121.2° |
C5' | C4' | O4' | C3' | 122.2° | 121.5° |
C5' | C4' | O4' | H4' | 118.1° | 118.0° |
C5' | C4' | C3' | H4' | 118.1° | 123.8° |
C5' | C4' | O4' | C1' | 114.6° | 116.0° |
C5' | C4' | C3' | O3' | 151.9° | 152.1° |
C5' | C4' | C3' | H3' | 31.8° | 31.2° |
H5' | C5' | C4' | O4' | 60.6° | 57.8° |
H5' | C5' | C4' | C3' | 177.9° | 60.0° |
H5' | C5' | C4' | H4' | 62.4° | 174.7° |
H5'' | C5' | C4' | O4' | 179.3° | 178.7° |
H5'' | C5' | C4' | C3' | 62.0° | 60.9° |
H5'' | C5' | C4' | H4' | 57.7° | 64.3° |
O4' | C4' | C3' | H4' | 122.9° | 117.7° |
C4' | O4' | C1' | H1' | 103.6° | 103.1° |
O4' | C4' | C3' | O3' | 89.1° | 89.4° |
O4' | C4' | C3' | H3' | 150.8° | 149.7° |
C3' | C4' | O4' | C1' | 7.6° | 5.5° |
C4' | C3' | O3' | H3' | 124.0° | 124.6° |
C4' | C3' | O3' | HO3' | 71.2° | 46.6° |
H4' | C4' | O4' | C1' | 127.3° | 126.0° |
H4' | C4' | C3' | O3' | 33.8° | 28.3° |
H4' | C4' | C3' | H3' | 86.3° | 92.6° |
H3' | C3' | O3' | HO3' | 164.8° | 171.2° |