M8E

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	O1	sing	1.46Å	1.49Å
O1	C4	sing	1.43Å	1.44Å
C6	C7	sing	1.53Å	1.62Å
C6	C5	sing	1.53Å	1.52Å
C7	N2	sing	1.47Å	1.49Å
N2	C8	sing	1.47Å	1.51Å
N2	C5'	sing	1.47Å	1.50Å
C5'	C4'	sing	1.53Å	1.52Å
C4'	O4'	sing	1.44Å	1.48Å
C4'	C3'	sing	1.54Å	1.51Å
O4'	C1'	sing	1.44Å	1.43Å
C1'	N6	sing	1.47Å	1.49Å
C1'	C2'	sing	1.55Å	1.54Å
N6	C13	sing	1.37Å	1.37Å	Aromatic
N6	C12	sing	1.37Å	1.39Å	Aromatic
C13	N3	doub	1.33Å	1.36Å	Aromatic
C13	C11	sing	1.41Å	1.40Å	Aromatic
N3	C9	sing	1.32Å	1.35Å	Aromatic
C9	N4	doub	1.32Å	1.37Å	Aromatic
N4	C10	sing	1.33Å	1.37Å	Aromatic
C10	N7	sing	1.38Å	1.34Å
C10	C11	doub	1.41Å	1.42Å	Aromatic
C11	N5	sing	1.35Å	1.37Å	Aromatic
N5	C12	doub	1.31Å	1.30Å	Aromatic
C12	C14	sing	1.47Å	1.51Å
C2'	O2'	sing	1.43Å	1.41Å
C2'	C3'	sing	1.55Å	1.53Å
C3'	O3'	sing	1.43Å	1.41Å
C5	C4	sing	1.53Å	1.54Å
C15	C14	doub	1.33Å	1.15Å
N1	HN1	sing	1.01Å	1.00Å
N1	HN1A	sing	1.01Å	1.00Å
C6	H6	sing	1.09Å	1.10Å
C6	H6A	sing	1.09Å	1.10Å
C7	H7	sing	1.09Å	1.10Å
C7	H7A	sing	1.09Å	1.10Å
C8	H8	sing	1.09Å	1.10Å
C8	H8A	sing	1.09Å	1.10Å
C8	H8B	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
C9	H9	sing	1.08Å	1.08Å
N7	HN7	sing	0.97Å	1.00Å
N7	HN7A	sing	0.97Å	1.00Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO2'	sing	0.97Å	0.95Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C5	H5	sing	1.09Å	1.10Å
C5	H5A	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.10Å
C4	H4A	sing	1.09Å	1.10Å
C15	H15	sing	1.08Å	1.08Å
C15	H15A	sing	1.08Å	1.08Å
C14	H14	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	O1	C4	109.6°	114.0°
O1	N1	HN1	109.5°	111.0°
O1	N1	HN1A	109.5°	111.0°
O1	C4	C5	112.3°	109.5°
O1	C4	H4	108.6°	109.5°
O1	C4	H4A	107.9°	109.4°
C7	C6	C5	110.8°	109.4°
C6	C7	N2	109.4°	109.5°
C7	C6	H6	109.0°	109.4°
C7	C6	H6A	108.7°	109.4°
C6	C7	H7	109.5°	109.4°
C6	C7	H7A	109.5°	109.5°
C6	C5	C4	110.4°	109.4°
C5	C6	H6	109.0°	109.5°
C5	C6	H6A	108.7°	109.5°
C6	C5	H5	109.2°	109.4°
C6	C5	H5A	109.0°	109.5°
C7	N2	C8	108.0°	111.0°
C7	N2	C5'	108.6°	111.0°
N2	C7	H7	109.5°	109.5°
N2	C7	H7A	109.5°	109.5°
C8	N2	C5'	111.2°	111.0°
N2	C8	H8	109.5°	109.5°
N2	C8	H8A	109.5°	109.5°
N2	C8	H8B	109.5°	109.5°
N2	C5'	C4'	114.6°	109.5°
N2	C5'	H5'	107.8°	109.5°
N2	C5'	H5'A	106.6°	109.5°
C5'	C4'	O4'	109.6°	109.9°
C5'	C4'	C3'	112.1°	109.9°
C4'	C5'	H5'	107.8°	109.4°
C4'	C5'	H5'A	106.6°	109.5°
C5'	C4'	H4'	106.8°	109.8°
O4'	C4'	C3'	106.9°	107.3°
C4'	O4'	C1'	108.9°	107.0°
O4'	C4'	H4'	112.0°	109.9°
C4'	C3'	C2'	101.8°	104.1°
C4'	C3'	O3'	108.1°	110.5°
C3'	C4'	H4'	109.5°	110.0°
C4'	C3'	H3'	115.3°	110.5°
O4'	C1'	N6	106.1°	110.6°
O4'	C1'	C2'	103.8°	103.5°
O4'	C1'	H1'	117.9°	110.6°
N6	C1'	C2'	116.8°	110.6°
C1'	N6	C13	125.9°	126.3°
C1'	N6	C12	129.2°	126.3°
N6	C1'	H1'	105.3°	110.5°
C1'	C2'	O2'	114.3°	110.9°
C1'	C2'	C3'	101.6°	102.1°
C2'	C1'	H1'	107.5°	110.8°
C1'	C2'	H2'	114.1°	110.9°
C13	N6	C12	104.9°	107.3°
N6	C13	N3	127.7°	134.7°
N6	C13	C11	105.7°	106.2°
N6	C12	N5	114.1°	109.6°
N6	C12	C14	120.8°	125.2°
N3	C13	C11	126.6°	119.1°
C13	N3	C9	111.3°	120.6°
C13	C11	C10	117.0°	118.1°
C13	C11	N5	110.9°	107.4°
N3	C9	N4	128.7°	122.5°
N3	C9	H9	115.6°	118.7°
C9	N4	C10	118.1°	121.2°
N4	C9	H9	115.7°	118.7°
N4	C10	N7	118.5°	120.8°
N4	C10	C11	118.3°	118.4°
N7	C10	C11	123.2°	120.7°
C10	N7	HN7	109.5°	120.0°
C10	N7	HN7A	109.5°	120.0°
C10	C11	N5	132.1°	134.5°
C11	N5	C12	104.4°	109.5°
N5	C12	C14	125.1°	125.2°
C12	C14	C15	130.6°	120.0°
C12	C14	H14	114.7°	120.0°
O2'	C2'	C3'	115.9°	110.9°
O2'	C2'	H2'	99.2°	110.9°
C2'	O2'	HO2'	109.5°	114.0°
C2'	C3'	O3'	110.0°	110.5°
C3'	C2'	H2'	112.5°	110.9°
C2'	C3'	H3'	113.6°	110.5°
O3'	C3'	H3'	107.8°	110.6°
C3'	O3'	HO3'	109.5°	114.0°
C4	C5	H5	109.2°	109.5°
C4	C5	H5A	109.0°	109.5°
C5	C4	H4	108.5°	109.5°
C5	C4	H4A	107.9°	109.5°
C14	C15	H15	113.7°	120.0°
C14	C15	H15A	123.2°	120.0°
C15	C14	H14	114.7°	120.0°
HN1	N1	HN1A	109.5°	111.0°
H6	C6	H6A	110.5°	109.5°
H7	C7	H7A	109.4°	109.5°
H8	C8	H8A	109.5°	109.4°
H8	C8	H8B	109.5°	109.4°
H8A	C8	H8B	109.5°	109.5°
H5'	C5'	H5'A	113.5°	109.5°
HN7	N7	HN7A	109.5°	120.0°
H5	C5	H5A	110.2°	109.5°
H4	C4	H4A	111.7°	109.5°
H15	C15	H15A	123.2°	120.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	O1	C4	C5	173.1°	180.0°
O1	N1	HN1	HN1A	120.0°	124.0°
N1	O1	C4	H4	53.1°	60.0°
N1	O1	C4	H4A	68.1°	60.0°
O1	C4	C5	C6	50.6°	180.0°
O1	C4	C5	H4	120.0°	120.0°
O1	C4	C5	H4A	118.8°	120.0°
C4	O1	N1	HN1	171.4°	56.0°
C4	O1	N1	HN1A	68.5°	180.0°
O1	C4	C5	H5	170.6°	60.1°
O1	C4	C5	H5A	69.0°	60.0°
O1	C4	H4	H4A	118.8°	120.0°
C7	C6	C5	H6	120.0°	119.9°
C7	C6	C5	H6A	119.4°	119.9°
C6	C7	N2	H7	120.0°	119.9°
C6	C7	N2	H7A	120.1°	120.0°
C6	C7	N2	C8	131.9°	66.1°
C6	C7	N2	C5'	107.4°	170.0°
C7	C6	C5	C4	179.5°	180.0°
C7	C6	H6	H6A	119.4°	120.0°
C6	C7	H7	H7A	120.1°	120.0°
C7	C6	C5	H5	59.5°	60.0°
C7	C6	C5	H5A	60.9°	60.0°
C5	C6	C7	N2	84.2°	180.0°
C6	C5	C4	H5	120.0°	119.9°
C6	C5	C4	H5A	119.6°	120.0°
C5	C6	H6	H6A	119.5°	120.1°
C5	C6	C7	H7	155.8°	60.0°
C5	C6	C7	H7A	35.8°	60.0°
C6	C5	H5	H5A	119.6°	120.0°
C6	C5	C4	H4	170.6°	60.0°
C6	C5	C4	H4A	68.2°	60.0°
C7	N2	C8	C5'	119.1°	123.9°
C7	N2	C5'	C4'	179.6°	170.0°
N2	C7	C6	H6	155.8°	60.0°
N2	C7	C6	H6A	35.3°	60.0°
N2	C7	H7	H7A	120.0°	120.1°
C7	N2	C8	H8	158.6°	60.0°
C7	N2	C8	H8A	81.4°	180.0°
C7	N2	C8	H8B	38.6°	60.0°
C7	N2	C5'	H5'	60.3°	50.0°
C7	N2	C5'	H5'A	61.9°	70.0°
C8	N2	C5'	C4'	60.9°	66.1°
C8	N2	C7	H7	108.1°	174.0°
C8	N2	C7	H7A	11.8°	53.9°
N2	C8	H8	H8A	120.0°	120.0°
N2	C8	H8	H8B	120.0°	120.1°
N2	C8	H8A	H8B	120.0°	120.1°
C8	N2	C5'	H5'	179.1°	173.9°
C8	N2	C5'	H5'A	56.8°	53.9°
N2	C5'	C4'	H5'	120.0°	120.0°
N2	C5'	C4'	H5'A	117.7°	120.0°
N2	C5'	C4'	O4'	44.6°	66.4°
N2	C5'	C4'	C3'	163.1°	175.7°
C5'	N2	C7	H7	12.6°	50.1°
C5'	N2	C7	H7A	132.5°	70.0°
C5'	N2	C8	H8	82.3°	176.1°
C5'	N2	C8	H8A	37.7°	56.1°
C5'	N2	C8	H8B	157.7°	64.0°
N2	C5'	H5'	H5'A	117.9°	120.0°
N2	C5'	C4'	H4'	77.0°	54.6°
C5'	C4'	O4'	C3'	121.7°	119.5°
C5'	C4'	O4'	H4'	118.4°	120.9°
C5'	C4'	C3'	H4'	118.4°	121.0°
C5'	C4'	O4'	C1'	121.2°	146.0°
C5'	C4'	C3'	C2'	94.9°	121.5°
C5'	C4'	C3'	O3'	149.3°	119.8°
C4'	C5'	H5'	H5'A	117.9°	120.0°
C5'	C4'	C3'	H3'	28.5°	2.9°
O4'	C4'	C3'	H4'	121.6°	119.5°
C4'	O4'	C1'	N6	147.9°	158.5°
C4'	O4'	C1'	C2'	24.3°	40.0°
O4'	C4'	C3'	C2'	25.2°	2.0°
O4'	C4'	C3'	O3'	90.7°	120.7°
O4'	C4'	C5'	H5'	75.4°	53.6°
O4'	C4'	C5'	H5'A	162.4°	173.6°
C4'	O4'	C1'	H1'	94.4°	78.6°
O4'	C4'	C3'	H3'	148.6°	116.6°
C3'	C4'	O4'	C1'	0.5°	26.5°
C4'	C3'	C2'	C1'	38.7°	20.9°
C4'	C3'	C2'	O2'	163.2°	139.1°
C4'	C3'	C2'	O3'	114.5°	118.6°
C4'	C3'	C2'	H3'	124.6°	118.7°
C4'	C3'	O3'	H3'	125.3°	122.7°
C3'	C4'	C5'	H5'	43.1°	64.3°
C3'	C4'	C5'	H5'A	79.2°	55.7°
C4'	C3'	C2'	H2'	83.7°	97.3°
C4'	C3'	O3'	HO3'	52.1°	179.9°
O4'	C1'	N6	C2'	115.1°	114.1°
O4'	C1'	N6	H1'	125.7°	122.9°
O4'	C1'	C2'	H1'	125.7°	118.6°
O4'	C1'	N6	C13	44.0°	136.5°
O4'	C1'	N6	C12	136.3°	43.3°
O4'	C1'	C2'	O2'	165.0°	155.2°
O4'	C1'	C2'	C3'	39.5°	37.0°
C1'	O4'	C4'	H4'	120.4°	93.1°
O4'	C1'	C2'	H2'	81.8°	81.2°
N6	C1'	C2'	H1'	118.0°	122.9°
C1'	N6	C13	C12	179.8°	179.8°
C1'	N6	C13	N3	0.0°	0.1°
C1'	N6	C13	C11	180.0°	180.0°
C1'	N6	C12	N5	179.9°	179.8°
C1'	N6	C12	C14	0.2°	0.0°
N6	C1'	C2'	O2'	78.7°	86.3°
N6	C1'	C2'	C3'	155.8°	155.5°
N6	C1'	C2'	H2'	34.5°	37.3°
C2'	C1'	N6	C13	71.1°	109.4°
C2'	C1'	N6	C12	108.7°	70.8°
C1'	C2'	O2'	C3'	117.6°	112.7°
C1'	C2'	O2'	H2'	121.8°	123.7°
C1'	C2'	C3'	H2'	122.4°	118.2°
C1'	C2'	C3'	O3'	75.8°	97.8°
C1'	C2'	O2'	HO2'	151.3°	180.0°
C1'	C2'	C3'	H3'	163.3°	139.5°
N6	C13	N3	C11	180.0°	179.9°
N6	C13	N3	C9	180.0°	179.9°
N6	C13	C11	C10	179.9°	180.0°
N6	C13	C11	N5	0.1°	0.0°
C13	N6	C12	N5	0.2°	0.4°
C13	N6	C12	C14	179.7°	179.7°
C13	N6	C1'	H1'	169.7°	13.6°
C12	N6	C13	N3	179.8°	179.7°
C12	N6	C13	C11	0.2°	0.2°
N6	C12	N5	C11	0.2°	0.4°
N6	C12	N5	C14	179.9°	179.8°
N6	C12	C14	C15	78.8°	180.0°
C12	N6	C1'	H1'	10.5°	166.1°
N6	C12	C14	H14	101.2°	0.0°
C13	N3	C9	N4	0.1°	0.0°
N3	C13	C11	C10	0.1°	0.1°
N3	C13	C11	N5	179.9°	180.0°
C13	N3	C9	H9	179.9°	179.9°
C11	C13	N3	C9	0.0°	0.0°
C13	C11	C10	N4	0.2°	0.1°
C13	C11	C10	N7	179.9°	180.0°
C13	C11	C10	N5	179.9°	180.0°
C13	C11	N5	C12	0.1°	0.3°
N3	C9	N4	H9	180.0°	179.9°
N3	C9	N4	C10	0.1°	0.0°
C9	N4	C10	N7	180.0°	180.0°
C9	N4	C10	C11	0.1°	0.0°
N4	C10	N7	C11	179.9°	180.0°
N4	C10	C11	N5	179.9°	180.0°
C10	N4	C9	H9	179.9°	179.9°
N4	C10	N7	HN7	14.2°	0.1°
N4	C10	N7	HN7A	134.2°	180.0°
N7	C10	C11	N5	0.0°	0.0°
C10	N7	HN7	HN7A	120.0°	180.0°
C10	C11	N5	C12	180.0°	179.7°
C11	C10	N7	HN7	165.7°	180.0°
C11	C10	N7	HN7A	45.7°	0.0°
C11	N5	C12	C14	179.7°	179.7°
N5	C12	C14	C15	101.1°	0.2°
N5	C12	C14	H14	78.9°	179.8°
C12	C14	C15	H14	180.0°	180.0°
C12	C14	C15	H15	180.0°	0.0°
C12	C14	C15	H15A	0.0°	180.0°
O2'	C2'	C3'	H2'	113.1°	123.6°
O2'	C2'	C3'	O3'	48.7°	20.4°
O2'	C2'	C1'	H1'	39.3°	36.6°
O2'	C2'	C3'	H3'	72.2°	102.3°
C2'	C3'	O3'	H3'	124.3°	122.6°
C2'	C3'	C4'	H4'	146.8°	117.5°
C3'	C2'	C1'	H1'	86.2°	81.6°
C3'	C2'	O2'	HO2'	91.1°	67.4°
C2'	C3'	O3'	HO3'	58.3°	65.2°
O3'	C3'	C4'	H4'	30.9°	1.1°
O3'	C3'	C2'	H2'	161.8°	144.1°
C4	C5	C6	H6	60.6°	60.1°
C4	C5	C6	H6A	60.0°	60.0°
C4	C5	H5	H5A	119.6°	120.0°
C5	C4	H4	H4A	118.8°	120.0°
C14	C15	H15	H15A	180.0°	180.0°
H6	C6	C7	H7	35.8°	60.0°
H6	C6	C7	H7A	84.2°	180.0°
H6	C6	C5	H5	179.4°	180.0°
H6	C6	C5	H5A	59.1°	59.9°
H6A	C6	C7	H7	84.7°	NaN°
H6A	C6	C7	H7A	155.3°	60.0°
H6A	C6	C5	H5	60.0°	59.9°
H6A	C6	C5	H5A	179.6°	180.0°
H8	C8	H8A	H8B	120.0°	119.9°
H5'	C5'	C4'	H4'	163.0°	174.6°
H5'A	C5'	C4'	H4'	40.8°	65.5°
H4'	C4'	C3'	H3'	89.8°	123.9°
H1'	C1'	C2'	H2'	152.5°	160.2°
H2'	C2'	O2'	HO2'	29.5°	56.3°
H2'	C2'	C3'	H3'	40.9°	21.4°
H3'	C3'	O3'	HO3'	177.3°	57.4°
H5	C5	C4	H4	69.4°	60.0°
H5	C5	C4	H4A	51.8°	180.0°
H5A	C5	C4	H4	51.0°	180.0°
H5A	C5	C4	H4A	172.2°	60.0°
H15	C15	C14	H14	0.0°	180.0°
H15A	C15	C14	H14	180.0°	0.0°

Definition date:	2008-07-31
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	3DZ6