M7A
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP2 | P | sing | 1.61Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| P | OP1 | doub | 1.48Å | 1.50Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| O3' | C3' | sing | 1.43Å | 1.41Å | |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| C4' | O4' | sing | 1.45Å | 1.45Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| O2' | C2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.54Å | 1.52Å | |
| C1' | N9 | sing | 1.47Å | 1.48Å | |
| C8 | N9 | sing | 1.48Å | 1.45Å | |
| C8 | N7 | sing | 1.48Å | 1.43Å | |
| N9 | C4 | sing | 1.39Å | 1.33Å | |
| C71 | N7 | sing | 1.47Å | 1.48Å | |
| N7 | C5 | sing | 1.41Å | 1.32Å | |
| C4 | C5 | doub | 1.39Å | 1.46Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.34Å | Aromatic |
| C5 | C6 | sing | 1.39Å | 1.46Å | Aromatic |
| N3 | C2 | doub | 1.32Å | 1.33Å | Aromatic |
| C6 | N6 | sing | 1.39Å | 1.34Å | |
| C6 | N1 | doub | 1.33Å | 1.33Å | Aromatic |
| C2 | N1 | sing | 1.32Å | 1.33Å | Aromatic |
| C1' | H1 | sing | 1.09Å | 1.10Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| C2' | H3 | sing | 1.09Å | 1.10Å | |
| C3' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.09Å | 1.10Å | |
| C71 | H9 | sing | 1.09Å | 1.10Å | |
| C71 | H10 | sing | 1.09Å | 1.10Å | |
| C71 | H11 | sing | 1.09Å | 1.10Å | |
| N6 | H12 | sing | 0.97Å | 1.00Å | |
| N6 | H13 | sing | 0.97Å | 1.00Å | |
| O2' | H14 | sing | 0.97Å | 0.95Å | |
| O3' | H15 | sing | 0.97Å | 0.95Å | |
| OP2 | H17 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| C8 | H18 | sing | 1.09Å | 1.10Å | |
| OP3 | H16 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP2 | P | O5' | 106.3° | 109.5° |
| OP2 | P | OP1 | 120.3° | 109.4° |
| P | OP2 | H17 | 109.5° | 113.9° |
| OP2 | P | OP3 | 108.6° | 109.5° |
| O5' | P | OP1 | 107.9° | 109.5° |
| P | O5' | C5' | 121.1° | 123.0° |
| O5' | P | OP3 | 103.9° | 109.5° |
| OP1 | P | OP3 | 108.8° | 109.5° |
| O5' | C5' | C4' | 109.8° | 109.4° |
| O5' | C5' | H6 | 109.4° | 109.5° |
| O5' | C5' | H7 | 109.4° | 109.5° |
| C5' | C4' | C3' | 115.0° | 110.6° |
| C5' | C4' | O4' | 108.4° | 110.7° |
| C5' | C4' | H5 | 109.9° | 110.7° |
| C4' | C5' | H6 | 109.4° | 109.4° |
| C4' | C5' | H7 | 109.4° | 109.5° |
| O3' | C3' | C4' | 114.6° | 110.9° |
| O3' | C3' | C2' | 114.6° | 110.9° |
| O3' | C3' | H4 | 109.3° | 110.8° |
| C3' | O3' | H15 | 109.5° | 114.0° |
| C3' | C4' | O4' | 103.0° | 103.6° |
| C4' | C3' | C2' | 102.1° | 102.1° |
| C4' | C3' | H4 | 107.9° | 110.9° |
| C3' | C4' | H5 | 109.7° | 110.6° |
| C4' | O4' | C1' | 109.8° | 106.9° |
| O4' | C4' | H5 | 110.6° | 110.5° |
| C3' | C2' | O2' | 110.5° | 110.6° |
| C3' | C2' | C1' | 101.2° | 104.2° |
| C3' | C2' | H3 | 111.6° | 110.5° |
| C2' | C3' | H4 | 107.9° | 110.9° |
| O4' | C1' | C2' | 107.4° | 107.4° |
| O4' | C1' | N9 | 110.7° | 109.9° |
| O4' | C1' | H1 | 109.5° | 109.9° |
| O2' | C2' | C1' | 108.0° | 110.5° |
| O2' | C2' | H3 | 113.3° | 110.5° |
| C2' | O2' | H14 | 109.5° | 114.0° |
| C2' | C1' | N9 | 112.7° | 109.8° |
| C2' | C1' | H1 | 108.0° | 109.9° |
| C1' | C2' | H3 | 111.5° | 110.5° |
| C1' | N9 | C8 | 117.9° | 111.0° |
| C1' | N9 | C4 | 126.4° | 111.3° |
| N9 | C1' | H1 | 108.5° | 109.9° |
| N9 | C8 | N7 | 97.9° | 103.2° |
| C8 | N9 | C4 | 115.7° | 105.7° |
| N9 | C8 | H8 | 112.3° | 110.7° |
| N9 | C8 | H18 | 112.3° | 110.6° |
| C8 | N7 | C71 | 109.7° | 111.0° |
| C8 | N7 | C5 | 115.5° | 105.0° |
| N7 | C8 | H8 | 112.3° | 110.7° |
| N7 | C8 | H18 | 112.3° | 110.7° |
| N9 | C4 | C5 | 104.6° | 109.4° |
| N9 | C4 | N3 | 137.1° | 131.8° |
| C71 | N7 | C5 | 134.8° | 111.1° |
| N7 | C71 | H9 | 109.5° | 109.5° |
| N7 | C71 | H10 | 109.5° | 109.4° |
| N7 | C71 | H11 | 109.5° | 109.4° |
| N7 | C5 | C4 | 106.4° | 109.3° |
| N7 | C5 | C6 | 134.5° | 132.3° |
| C5 | C4 | N3 | 118.3° | 118.9° |
| C4 | C5 | C6 | 119.1° | 118.4° |
| C4 | N3 | C2 | 120.1° | 120.8° |
| C5 | C6 | N6 | 123.9° | 120.6° |
| C5 | C6 | N1 | 115.0° | 118.8° |
| N3 | C2 | N1 | 123.7° | 122.2° |
| N3 | C2 | H2 | 118.1° | 118.9° |
| N6 | C6 | N1 | 121.0° | 120.6° |
| C6 | N6 | H12 | 109.5° | 120.0° |
| C6 | N6 | H13 | 109.4° | 120.0° |
| C6 | N1 | C2 | 123.8° | 120.9° |
| N1 | C2 | H2 | 118.2° | 118.9° |
| H6 | C5' | H7 | 109.5° | 109.5° |
| H8 | C8 | H18 | 109.5° | 110.8° |
| H9 | C71 | H10 | 109.4° | 109.5° |
| H9 | C71 | H11 | 109.4° | 109.5° |
| H10 | C71 | H11 | 109.5° | 109.5° |
| H12 | N6 | H13 | 109.4° | 120.0° |
| P | OP3 | H16 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP2 | P | O5' | OP1 | 130.2° | 119.9° |
| OP2 | P | O5' | OP3 | 114.4° | 120.0° |
| OP2 | P | OP1 | OP3 | 126.0° | 120.0° |
| OP2 | P | O5' | C5' | 50.0° | 65.0° |
| OP2 | P | OP3 | H16 | 132.5° | 60.0° |
| O5' | P | OP1 | OP3 | 112.0° | 120.0° |
| P | O5' | C5' | C4' | 169.0° | 180.0° |
| P | O5' | C5' | H6 | 71.0° | 60.1° |
| P | O5' | C5' | H7 | 48.9° | 60.0° |
| O5' | P | OP2 | H17 | 122.7° | 60.0° |
| O5' | P | OP3 | H16 | 114.7° | 180.0° |
| OP1 | P | O5' | C5' | 179.7° | 55.0° |
| OP1 | P | OP2 | H17 | 0.0° | 180.0° |
| OP1 | P | OP3 | H16 | 0.0° | 60.0° |
| O5' | C5' | C4' | H6 | 120.0° | 120.0° |
| O5' | C5' | C4' | H7 | 120.1° | 120.0° |
| O5' | C5' | C4' | C3' | 51.5° | 175.0° |
| O5' | C5' | C4' | O4' | 63.1° | 70.8° |
| O5' | C5' | C4' | H5 | 175.9° | 52.0° |
| O5' | C5' | H6 | H7 | 119.9° | 120.1° |
| C5' | O5' | P | OP3 | 64.4° | 175.0° |
| C5' | C4' | C3' | O3' | 79.0° | 86.3° |
| C5' | C4' | C3' | O4' | 117.7° | 118.6° |
| C5' | C4' | C3' | H5 | 124.5° | 123.0° |
| C5' | C4' | O4' | H5 | 120.6° | 123.0° |
| C5' | C4' | C3' | C2' | 156.5° | 155.5° |
| C5' | C4' | O4' | C1' | 147.1° | 158.4° |
| C5' | C4' | C3' | H4 | 43.0° | 37.3° |
| C4' | C5' | H6 | H7 | 119.8° | 120.0° |
| O3' | C3' | C4' | C2' | 124.5° | 118.2° |
| O3' | C3' | C4' | H4 | 122.0° | 123.6° |
| O3' | C3' | C4' | O4' | 163.3° | 155.1° |
| O3' | C3' | C2' | H4 | 121.9° | 123.6° |
| O3' | C3' | C2' | O2' | 48.0° | 20.4° |
| O3' | C3' | C2' | C1' | 162.2° | 139.1° |
| O3' | C3' | C2' | H3 | 79.1° | 102.3° |
| O3' | C3' | C4' | H5 | 45.5° | 36.7° |
| C3' | C4' | O4' | H5 | 117.2° | 118.5° |
| C4' | C3' | C2' | H4 | 113.6° | 118.2° |
| C3' | C4' | O4' | C1' | 24.8° | 39.9° |
| C4' | C3' | C2' | O2' | 76.5° | 97.8° |
| C4' | C3' | C2' | C1' | 37.7° | 20.9° |
| C4' | C3' | C2' | H3 | 156.5° | 139.5° |
| C3' | C4' | C5' | H6 | 68.5° | 55.0° |
| C3' | C4' | C5' | H7 | 171.6° | 65.0° |
| C4' | C3' | O3' | H15 | 180.0° | 174.2° |
| O4' | C4' | C3' | C2' | 38.9° | 36.9° |
| C4' | O4' | C1' | C2' | 0.5° | 26.3° |
| C4' | O4' | C1' | N9 | 124.0° | 145.8° |
| C4' | O4' | C1' | H1 | 116.5° | 93.2° |
| O4' | C4' | C3' | H4 | 74.7° | 81.3° |
| O4' | C4' | C5' | H6 | 176.8° | 169.2° |
| O4' | C4' | C5' | H7 | 57.0° | 49.2° |
| C3' | C2' | C1' | O4' | 23.7° | 1.9° |
| C3' | C2' | O2' | C1' | 109.9° | 114.8° |
| C3' | C2' | O2' | H3 | 126.1° | 122.6° |
| C3' | C2' | C1' | H3 | 118.8° | 118.6° |
| C3' | C2' | C1' | N9 | 98.5° | 121.4° |
| C3' | C2' | C1' | H1 | 141.7° | 117.6° |
| C2' | C3' | C4' | H5 | 79.0° | 81.5° |
| C3' | C2' | O2' | H14 | 180.0° | 65.2° |
| C2' | C3' | O3' | H15 | 62.4° | 61.5° |
| O4' | C1' | C2' | O2' | 92.4° | 120.8° |
| O4' | C1' | C2' | N9 | 122.2° | 119.5° |
| O4' | C1' | C2' | H1 | 118.0° | 119.5° |
| O4' | C1' | N9 | H1 | 120.1° | 121.1° |
| O4' | C1' | N9 | C8 | 19.6° | 56.7° |
| O4' | C1' | N9 | C4 | 161.5° | 174.1° |
| O4' | C1' | C2' | H3 | 142.5° | 116.7° |
| C1' | O4' | C4' | H5 | 92.4° | 78.6° |
| O2' | C2' | C1' | H3 | 125.1° | 122.6° |
| O2' | C2' | C1' | N9 | 145.4° | 119.8° |
| O2' | C2' | C1' | H1 | 25.5° | 1.2° |
| O2' | C2' | C3' | H4 | 169.9° | 144.0° |
| C2' | C1' | N9 | H1 | 119.5° | 121.0° |
| C2' | C1' | N9 | C8 | 100.7° | 174.7° |
| C2' | C1' | N9 | C4 | 78.2° | 68.0° |
| C1' | C2' | C3' | H4 | 75.9° | 97.3° |
| C1' | C2' | O2' | H14 | 70.1° | 180.0° |
| C1' | N9 | C8 | C4 | 179.0° | 120.7° |
| C1' | N9 | C8 | N7 | 179.1° | 146.9° |
| C1' | N9 | C4 | C5 | 179.8° | 137.3° |
| C1' | N9 | C4 | N3 | 1.5° | 42.5° |
| N9 | C1' | C2' | H3 | 20.3° | 2.8° |
| C1' | N9 | C8 | H8 | 62.8° | 94.7° |
| C1' | N9 | C8 | H18 | 61.0° | 28.5° |
| N9 | C8 | N7 | H8 | 118.1° | 118.4° |
| N9 | C8 | N7 | H18 | 118.0° | 118.3° |
| N9 | C8 | N7 | C71 | 179.6° | 146.3° |
| N9 | C8 | N7 | C5 | 1.0° | 26.1° |
| C8 | N9 | C4 | C5 | 0.9° | 16.8° |
| C8 | N9 | C4 | N3 | 179.5° | 163.0° |
| C8 | N9 | C1' | H1 | 139.8° | 64.4° |
| N9 | C8 | H8 | H18 | 125.4° | 123.1° |
| N7 | C8 | N9 | C4 | 0.0° | 26.2° |
| C8 | N7 | C71 | C5 | 179.2° | 116.5° |
| C8 | N7 | C5 | C4 | 1.6° | 16.9° |
| C8 | N7 | C5 | C6 | 180.0° | 163.4° |
| N7 | C8 | H8 | H18 | 125.5° | 123.2° |
| C8 | N7 | C71 | H9 | 180.0° | 52.0° |
| C8 | N7 | C71 | H10 | 60.0° | 172.0° |
| C8 | N7 | C71 | H11 | 60.0° | 68.1° |
| N9 | C4 | C5 | N7 | 1.5° | 0.1° |
| N9 | C4 | C5 | N3 | 178.9° | 179.8° |
| N9 | C4 | C5 | C6 | 179.8° | 179.9° |
| N9 | C4 | N3 | C2 | 179.2° | 179.8° |
| C4 | N9 | C1' | H1 | 41.3° | 53.0° |
| C4 | N9 | C8 | H8 | 118.1° | 144.6° |
| C4 | N9 | C8 | H18 | 118.0° | 92.2° |
| C71 | N7 | C5 | C4 | 179.2° | 137.0° |
| C71 | N7 | C5 | C6 | 0.8° | 43.3° |
| C71 | N7 | C8 | H8 | 62.3° | 95.3° |
| N7 | C71 | H9 | H10 | 120.0° | 120.0° |
| N7 | C71 | H9 | H11 | 120.0° | 120.0° |
| N7 | C71 | H10 | H11 | 120.0° | 119.9° |
| C71 | N7 | C8 | H18 | 61.6° | 27.9° |
| N7 | C5 | C4 | C6 | 178.7° | 179.8° |
| N7 | C5 | C4 | N3 | 179.6° | 180.0° |
| N7 | C5 | C6 | N6 | 1.2° | 0.3° |
| N7 | C5 | C6 | N1 | 179.0° | 179.8° |
| C5 | N7 | C8 | H8 | 117.1° | 144.5° |
| C5 | N7 | C71 | H9 | 0.8° | 168.4° |
| C5 | N7 | C71 | H10 | 119.2° | 71.5° |
| C5 | N7 | C71 | H11 | 120.8° | 48.4° |
| C5 | N7 | C8 | H18 | 119.0° | 92.3° |
| C5 | C4 | N3 | C2 | 0.7° | 0.0° |
| C4 | C5 | C6 | N6 | 179.4° | 180.0° |
| C4 | C5 | C6 | N1 | 0.7° | 0.5° |
| N3 | C4 | C5 | C6 | 0.9° | 0.3° |
| C4 | N3 | C2 | N1 | 0.3° | 0.0° |
| C4 | N3 | C2 | H2 | 179.7° | 179.7° |
| C5 | C6 | N6 | N1 | 179.9° | 179.5° |
| C5 | C6 | N1 | C2 | 0.3° | 0.5° |
| C5 | C6 | N6 | H12 | 179.8° | 10.8° |
| C5 | C6 | N6 | H13 | 59.9° | 169.4° |
| N3 | C2 | N1 | C6 | 0.1° | 0.2° |
| N3 | C2 | N1 | H2 | 180.0° | 179.8° |
| N6 | C6 | N1 | C2 | 179.8° | 180.0° |
| C6 | N6 | H12 | H13 | 120.0° | 179.9° |
| C6 | N1 | C2 | H2 | 179.9° | 180.0° |
| N1 | C6 | N6 | H12 | 0.0° | 169.8° |
| N1 | C6 | N6 | H13 | 120.0° | 10.1° |
| H1 | C1' | C2' | H3 | 99.5° | 123.8° |
| H3 | C2' | C3' | H4 | 42.9° | 21.3° |
| H3 | C2' | O2' | H14 | 53.9° | 57.4° |
| H4 | C3' | C4' | H5 | 167.5° | 160.3° |
| H4 | C3' | O3' | H15 | 58.7° | 62.2° |
| H5 | C4' | C5' | H6 | 55.9° | 67.9° |
| H5 | C4' | C5' | H7 | 64.0° | 172.0° |
| H9 | C71 | H10 | H11 | 120.0° | 120.1° |
| H17 | OP2 | P | OP3 | 126.1° | 60.0° |
