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M5P

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.38Å1.39ÅAromatic
C1C6doub1.38Å1.39ÅAromatic
C1H1sing1.08Å1.08Å
C2C3doub1.38Å1.39ÅAromatic
C2H2sing1.08Å1.08Å
C3C4sing1.38Å1.39ÅAromatic
C3H3sing1.08Å1.08Å
C4C5doub1.38Å1.39ÅAromatic
C4H4sing1.08Å1.08Å
C5C6sing1.38Å1.39ÅAromatic
C5H5sing1.08Å1.08Å
C6C7sing1.51Å1.53Å
C7C8sing1.53Å1.53Å
C7H71sing1.09Å1.10Å
C7H72sing1.09Å1.10Å
C8C9sing1.53Å1.53Å
C8H81sing1.09Å1.10Å
C8H82sing1.09Å1.10Å
C9C10sing1.53Å1.53Å
C9H91sing1.09Å1.10Å
C9H92sing1.09Å1.10Å
C10C12sing1.51Å1.53Å
C10C11sing1.53Å1.53Å
C10H10sing1.09Å1.10Å
C12O2doub1.21Å1.23Å
C12O1sing1.34Å1.23Å
O1HO1sing0.97Å0.95Å
C11S1sing1.81Å1.83Å
C11H111sing1.09Å1.10Å
C11H112sing1.09Å1.10Å
S1HS1sing1.34Å1.30Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C6120.1°120.0°
C2C1H1120.0°120.1°
C1C2C3120.0°120.0°
C1C2H2120.0°120.0°
C6C1H1119.9°119.9°
C1C6C5119.8°120.0°
C1C6C7119.2°120.0°
C3C2H2120.0°120.0°
C2C3C4119.9°120.0°
C2C3H3120.1°120.0°
C4C3H3120.1°120.0°
C3C4C5120.1°120.0°
C3C4H4120.0°120.0°
C5C4H4120.0°120.0°
C4C5C6120.1°120.0°
C4C5H5120.0°120.0°
C6C5H5120.0°120.0°
C5C6C7120.5°120.0°
C6C7C8108.3°109.5°
C6C7H71109.8°109.5°
C6C7H72110.1°109.5°
C8C7H71109.9°109.4°
C8C7H72110.1°109.5°
C7C8C9113.4°109.4°
C7C8H81108.2°109.4°
C7C8H82107.3°109.5°
H71C7H72108.6°109.5°
C9C8H81108.2°109.5°
C9C8H82107.3°109.5°
C8C9C10108.9°109.5°
C8C9H91109.7°109.5°
C8C9H92109.8°109.5°
H81C8H82112.6°109.4°
C10C9H91109.6°109.4°
C10C9H92109.8°109.4°
C9C10C12112.7°109.5°
C9C10C11111.9°109.5°
C9C10H10105.9°109.5°
H91C9H92109.0°109.5°
C12C10C11110.6°109.5°
C12C10H10107.3°109.5°
C10C12O2119.6°120.0°
C10C12O1121.0°120.0°
C11C10H10108.1°109.4°
C10C11S1110.0°109.5°
C10C11H111109.3°109.5°
C10C11H112109.2°109.4°
O2C12O1119.4°120.0°
C12O1HO1109.5°116.9°
S1C11H111109.3°109.5°
S1C11H112109.2°109.5°
C11S1HS1109.5°103.0°
H111C11H112109.9°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C6H1180.0°179.7°
C1C2C3H2180.0°180.0°
C1C2C3C40.4°0.0°
C1C2C3H3179.6°179.9°
C2C1C6C50.8°0.0°
C2C1C6C7171.6°179.9°
C6C1C2C30.2°0.0°
C6C1C2H2179.8°180.0°
C1C6C5C40.9°0.1°
C1C6C5C7172.3°179.9°
C1C6C5H5179.1°180.0°
C1C6C7C8114.7°90.0°
C1C6C7H715.3°150.0°
C1C6C7H72124.8°30.0°
H1C1C2C3179.8°179.7°
H1C1C2H20.2°0.4°
H1C1C6C5179.2°179.6°
H1C1C6C78.4°0.3°
C2C3C4H3180.0°180.0°
C2C3C4C50.4°0.0°
C2C3C4H4179.6°180.0°
H2C2C3C4179.6°180.0°
H2C2C3H30.4°0.0°
C3C4C5H4180.0°180.0°
C3C4C5C60.3°0.1°
C3C4C5H5179.7°180.0°
H3C3C4C5179.7°180.0°
H3C3C4H40.3°0.0°
C4C5C6H5180.0°179.9°
C4C5C6C7171.4°180.0°
H4C4C5C6179.7°179.9°
H4C4C5H50.3°0.0°
C5C6C7C857.7°90.1°
C5C6C7H71177.7°29.9°
C5C6C7H7262.8°149.9°
H5C5C6C78.6°0.1°
C6C7C8H71120.0°120.0°
C6C7C8H72120.5°120.0°
C6C7H71H72120.5°120.0°
C6C7C8C9141.1°180.0°
C6C7C8H8198.9°59.9°
C6C7C8H8222.8°60.0°
C8C7H71H72120.5°120.0°
C7C8C9H81120.0°120.0°
C7C8C9H82118.3°120.0°
C7C8H81H82118.3°120.0°
C7C8C9C10162.5°174.9°
C7C8C9H9142.5°65.2°
C7C8C9H9277.3°54.9°
H71C7C8C921.1°60.0°
H71C7C8H81141.1°179.9°
H71C7C8H8297.2°60.0°
H72C7C8C998.4°60.0°
H72C7C8H8121.6°60.1°
H72C7C8H82143.3°180.0°
C9C8H81H82118.4°120.1°
C8C9C10H91120.0°120.0°
C8C9C10H92120.2°120.0°
C8C9H91H92120.2°120.1°
C8C9C10C12164.9°66.5°
C8C9C10C1169.7°173.4°
C8C9C10H1047.9°53.5°
H81C8C9C1077.5°54.9°
H81C8C9H91162.5°174.8°
H81C8C9H9242.7°65.1°
H82C8C9C1044.2°65.2°
H82C8C9H9175.8°54.8°
H82C8C9H92164.5°174.9°
C10C9H91H92120.2°119.9°
C9C10C12C11126.1°120.0°
C9C10C12H10116.2°120.0°
C9C10C11H10116.3°120.0°
C9C10C12O299.8°0.0°
C9C10C12O181.8°180.0°
C9C10C11S1110.9°65.7°
C9C10C11H111129.1°174.3°
C9C10C11H1128.9°54.3°
H91C9C10C1244.9°53.5°
H91C9C10C11170.3°66.5°
H91C9C10H1072.1°173.5°
H92C9C10C1274.9°173.4°
H92C9C10C1150.6°53.4°
H92C9C10H10168.1°66.6°
C12C10C11H10117.2°120.0°
C10C12O2O1178.5°180.0°
C10C12O1HO1178.4°180.0°
C12C10C11S1122.6°174.3°
C12C10C11H1112.6°54.3°
C12C10C11H112117.6°65.7°
C11C10C12O2134.1°120.0°
C11C10C12O144.3°60.0°
C10C11S1H111120.0°120.0°
C10C11S1H112119.8°120.0°
C10C11H111H112119.8°120.0°
C10C11S1HS144.2°180.0°
H10C10C12O216.4°120.0°
H10C10C12O1162.0°60.0°
H10C10C11S15.4°54.3°
H10C10C11H111114.6°65.7°
H10C10C11H112125.2°174.3°
O2C12O1HO10.0°0.0°
S1C11H111H112119.8°120.0°
H111C11S1HS175.8°60.0°
H112C11S1HS1164.0°60.0°

224931

PDB entries from 2024-09-11

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