M57
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | C | sing | 1.38Å | 1.34Å | |
N1 | C | doub | 1.32Å | 1.33Å | Aromatic |
N1 | C1 | sing | 1.34Å | 1.37Å | Aromatic |
C | N5 | sing | 1.36Å | 1.37Å | Aromatic |
O2 | C8 | doub | 1.21Å | 1.22Å | |
C1 | N2 | sing | 1.39Å | 1.36Å | |
C1 | N4 | doub | 1.31Å | 1.31Å | Aromatic |
N5 | C8 | sing | 1.35Å | 1.39Å | |
N5 | N4 | sing | 1.40Å | 1.37Å | Aromatic |
N2 | C2 | sing | 1.40Å | 1.42Å | |
C18 | C17 | doub | 1.38Å | 1.38Å | Aromatic |
C18 | C9 | sing | 1.39Å | 1.39Å | Aromatic |
C8 | N6 | sing | 1.35Å | 1.35Å | |
C17 | C12 | sing | 1.40Å | 1.39Å | Aromatic |
C7 | C2 | doub | 1.39Å | 1.39Å | Aromatic |
C7 | C6 | sing | 1.38Å | 1.38Å | Aromatic |
C2 | C3 | sing | 1.39Å | 1.40Å | Aromatic |
N6 | C9 | sing | 1.40Å | 1.40Å | |
C6 | C5 | doub | 1.38Å | 1.38Å | Aromatic |
O5 | C16 | sing | 1.34Å | 1.37Å | Aromatic |
O5 | C13 | sing | 1.34Å | 1.35Å | Aromatic |
C9 | C10 | doub | 1.39Å | 1.39Å | Aromatic |
C16 | C14 | doub | 1.36Å | 1.35Å | Aromatic |
C3 | C4 | doub | 1.38Å | 1.39Å | Aromatic |
C12 | C13 | sing | 1.48Å | 1.45Å | |
C12 | C11 | doub | 1.40Å | 1.40Å | Aromatic |
C13 | N7 | doub | 1.31Å | 1.29Å | Aromatic |
C5 | C4 | sing | 1.38Å | 1.39Å | Aromatic |
C5 | S | sing | 1.76Å | 1.77Å | |
O | S | doub | 1.42Å | 1.44Å | |
C14 | N7 | sing | 1.36Å | 1.38Å | Aromatic |
C14 | C15 | sing | 1.47Å | 1.47Å | |
C10 | C11 | sing | 1.38Å | 1.38Å | Aromatic |
S | O1 | doub | 1.42Å | 1.43Å | |
S | N3 | sing | 1.66Å | 1.59Å | |
C15 | O4 | doub | 1.22Å | 1.31Å | |
C15 | O3 | sing | 1.35Å | 1.22Å | |
O3 | H1 | sing | 0.97Å | 0.95Å | |
C4 | H2 | sing | 1.08Å | 1.08Å | |
C6 | H3 | sing | 1.08Å | 1.08Å | |
C7 | H4 | sing | 1.08Å | 1.08Å | |
N2 | H5 | sing | 0.97Å | 1.00Å | |
C10 | H6 | sing | 1.08Å | 1.08Å | |
C11 | H7 | sing | 1.08Å | 1.08Å | |
N3 | H8 | sing | 0.97Å | 1.00Å | |
N3 | H9 | sing | 0.97Å | 1.00Å | |
N | H10 | sing | 0.97Å | 1.00Å | |
N | H11 | sing | 0.97Å | 1.00Å | |
C16 | H12 | sing | 1.08Å | 1.08Å | |
C17 | H13 | sing | 1.08Å | 1.08Å | |
C18 | H14 | sing | 1.08Å | 1.08Å | |
C3 | H15 | sing | 1.08Å | 1.08Å | |
N6 | H16 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N | C | N1 | 128.9° | 126.1° |
N | C | N5 | 122.9° | 126.2° |
C | N | H10 | 109.5° | 120.0° |
C | N | H11 | 109.4° | 120.0° |
C | N1 | C1 | 102.8° | 109.7° |
N1 | C | N5 | 108.2° | 107.7° |
N1 | C1 | N2 | 119.7° | 125.4° |
N1 | C1 | N4 | 117.0° | 109.3° |
C | N5 | C8 | 128.2° | 126.8° |
C | N5 | N4 | 111.7° | 106.3° |
O2 | C8 | N5 | 119.2° | 120.0° |
O2 | C8 | N6 | 126.3° | 120.0° |
N2 | C1 | N4 | 123.3° | 125.4° |
C1 | N2 | C2 | 131.6° | 120.0° |
C1 | N2 | H5 | 114.2° | 120.0° |
C1 | N4 | N5 | 100.3° | 107.0° |
C8 | N5 | N4 | 120.2° | 126.8° |
N5 | C8 | N6 | 114.5° | 120.0° |
N2 | C2 | C7 | 119.2° | 120.1° |
N2 | C2 | C3 | 121.4° | 120.1° |
C2 | N2 | H5 | 114.2° | 120.0° |
C17 | C18 | C9 | 119.8° | 120.1° |
C18 | C17 | C12 | 120.1° | 119.9° |
C18 | C17 | H13 | 119.9° | 120.0° |
C17 | C18 | H14 | 120.1° | 119.9° |
C18 | C9 | N6 | 115.8° | 119.9° |
C18 | C9 | C10 | 120.6° | 120.2° |
C9 | C18 | H14 | 120.1° | 120.0° |
C8 | N6 | C9 | 121.7° | 120.0° |
C8 | N6 | H16 | 119.1° | 120.0° |
C17 | C12 | C13 | 119.0° | 120.1° |
C17 | C12 | C11 | 120.1° | 119.9° |
C12 | C17 | H13 | 119.9° | 120.1° |
C2 | C7 | C6 | 120.3° | 119.9° |
C7 | C2 | C3 | 119.4° | 119.9° |
C2 | C7 | H4 | 119.9° | 120.0° |
C7 | C6 | C5 | 119.7° | 120.1° |
C7 | C6 | H3 | 120.1° | 119.9° |
C6 | C7 | H4 | 119.8° | 120.1° |
C2 | C3 | C4 | 120.2° | 119.9° |
C2 | C3 | H15 | 119.9° | 120.1° |
N6 | C9 | C10 | 123.6° | 119.9° |
C9 | N6 | H16 | 119.1° | 120.0° |
C6 | C5 | C4 | 120.9° | 120.2° |
C6 | C5 | S | 120.3° | 119.9° |
C5 | C6 | H3 | 120.2° | 120.0° |
C16 | O5 | C13 | 104.1° | 108.2° |
O5 | C16 | C14 | 107.5° | 107.1° |
O5 | C16 | H12 | 126.3° | 126.4° |
O5 | C13 | C12 | 117.9° | 125.5° |
O5 | C13 | N7 | 114.5° | 109.0° |
C9 | C10 | C11 | 119.6° | 120.0° |
C9 | C10 | H6 | 120.2° | 120.0° |
C16 | C14 | N7 | 109.5° | 107.3° |
C16 | C14 | C15 | 130.6° | 126.3° |
C14 | C16 | H12 | 126.3° | 126.5° |
C3 | C4 | C5 | 119.5° | 120.1° |
C3 | C4 | H2 | 120.2° | 120.0° |
C4 | C3 | H15 | 119.9° | 120.0° |
C13 | C12 | C11 | 120.9° | 120.1° |
C12 | C13 | N7 | 127.6° | 125.4° |
C12 | C11 | C10 | 119.7° | 119.9° |
C12 | C11 | H7 | 120.2° | 120.0° |
C13 | N7 | C14 | 104.4° | 108.4° |
C4 | C5 | S | 118.8° | 119.9° |
C5 | C4 | H2 | 120.2° | 120.0° |
C5 | S | O | 105.9° | 106.4° |
C5 | S | O1 | 110.7° | 106.4° |
C5 | S | N3 | 105.6° | 107.2° |
O | S | O1 | 118.0° | 123.2° |
O | S | N3 | 108.7° | 106.4° |
N7 | C14 | C15 | 119.8° | 126.4° |
C14 | C15 | O4 | 112.6° | 120.0° |
C14 | C15 | O3 | 122.9° | 120.0° |
C11 | C10 | H6 | 120.2° | 120.0° |
C10 | C11 | H7 | 120.2° | 120.0° |
O1 | S | N3 | 107.2° | 106.4° |
S | N3 | H8 | 109.5° | 120.0° |
S | N3 | H9 | 109.4° | 120.0° |
O4 | C15 | O3 | 124.5° | 120.0° |
C15 | O3 | H1 | 109.5° | 117.0° |
H8 | N3 | H9 | 109.5° | 120.0° |
H10 | N | H11 | 109.4° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N | C | N1 | N5 | 179.9° | 179.9° |
N | C | N1 | C1 | 179.9° | 179.9° |
N | C | N5 | C8 | 0.8° | 0.0° |
N | C | N5 | N4 | 179.8° | 180.0° |
C | N | H10 | H11 | 120.0° | 179.9° |
C | N1 | C1 | N2 | 180.0° | 180.0° |
C | N1 | C1 | N4 | 0.0° | 0.0° |
N1 | C | N5 | C8 | 179.1° | 180.0° |
N1 | C | N5 | N4 | 0.3° | 0.0° |
N1 | C | N | H10 | 0.0° | 0.0° |
N1 | C | N | H11 | 120.0° | 179.9° |
C1 | N1 | C | N5 | 0.2° | 0.0° |
N1 | C1 | N2 | N4 | 180.0° | 179.9° |
N1 | C1 | N4 | N5 | 0.1° | 0.0° |
N1 | C1 | N2 | C2 | 179.1° | 5.2° |
N1 | C1 | N2 | H5 | 0.9° | 174.7° |
C | N5 | C8 | O2 | 0.4° | 0.0° |
C | N5 | N4 | C1 | 0.2° | 0.0° |
C | N5 | C8 | N4 | 179.3° | 180.0° |
C | N5 | C8 | N6 | 179.7° | 180.0° |
N5 | C | N | H10 | 179.9° | 179.9° |
N5 | C | N | H11 | 60.1° | 0.0° |
O2 | C8 | N5 | N6 | 179.3° | 180.0° |
O2 | C8 | N5 | N4 | 179.7° | 180.0° |
O2 | C8 | N6 | C9 | 1.8° | 5.6° |
O2 | C8 | N6 | H16 | 178.1° | 174.4° |
N2 | C1 | N4 | N5 | 179.9° | 180.0° |
C1 | N2 | C2 | H5 | 180.0° | 180.0° |
C1 | N2 | C2 | C7 | 160.4° | 34.0° |
C1 | N2 | C2 | C3 | 19.3° | 145.6° |
C1 | N4 | N5 | C8 | 179.2° | 180.0° |
N4 | C1 | N2 | C2 | 0.9° | 174.7° |
N4 | C1 | N2 | H5 | 179.1° | 5.3° |
N5 | C8 | N6 | C9 | 178.9° | 174.4° |
N5 | C8 | N6 | H16 | 1.1° | 5.6° |
N4 | N5 | C8 | N6 | 1.0° | 0.0° |
N2 | C2 | C7 | C3 | 179.7° | 179.6° |
N2 | C2 | C7 | C6 | 179.9° | 180.0° |
N2 | C2 | C3 | C4 | 179.8° | 179.8° |
N2 | C2 | C7 | H4 | 0.1° | 0.3° |
N2 | C2 | C3 | H15 | 0.2° | 0.3° |
C17 | C18 | C9 | H14 | 180.0° | 179.9° |
C18 | C17 | C12 | H13 | 180.0° | 179.9° |
C17 | C18 | C9 | N6 | 180.0° | 179.7° |
C17 | C18 | C9 | C10 | 0.1° | 0.1° |
C18 | C17 | C12 | C13 | 179.9° | 179.9° |
C18 | C17 | C12 | C11 | 0.6° | 0.0° |
C18 | C9 | N6 | C8 | 77.2° | 34.9° |
C9 | C18 | C17 | C12 | 0.4° | 0.1° |
C18 | C9 | N6 | C10 | 179.8° | 179.8° |
C18 | C9 | C10 | C11 | 0.1° | 0.0° |
C18 | C9 | C10 | H6 | 179.9° | 180.0° |
C9 | C18 | C17 | H13 | 179.6° | 180.0° |
C18 | C9 | N6 | H16 | 102.8° | 145.1° |
C8 | N6 | C9 | H16 | 180.0° | 180.0° |
C8 | N6 | C9 | C10 | 102.6° | 145.4° |
C17 | C12 | C13 | O5 | 24.8° | 180.0° |
C17 | C12 | C13 | C11 | 179.5° | 180.0° |
C17 | C12 | C13 | N7 | 155.3° | 0.0° |
C17 | C12 | C11 | C10 | 0.6° | 0.1° |
C17 | C12 | C11 | H7 | 179.4° | 180.0° |
C12 | C17 | C18 | H14 | 179.6° | 180.0° |
C2 | C7 | C6 | H4 | 180.0° | 179.7° |
C2 | C7 | C6 | C5 | 0.1° | 0.0° |
C7 | C2 | C3 | C4 | 0.5° | 0.6° |
C2 | C7 | C6 | H3 | 179.9° | 179.9° |
C7 | C2 | N2 | H5 | 19.6° | 146.0° |
C7 | C2 | C3 | H15 | 179.4° | 180.0° |
C6 | C7 | C2 | C3 | 0.5° | 0.3° |
C7 | C6 | C5 | H3 | 180.0° | 180.0° |
C7 | C6 | C5 | C4 | 0.2° | 0.0° |
C7 | C6 | C5 | S | 179.8° | 180.0° |
C2 | C3 | C4 | H15 | 180.0° | 179.4° |
C2 | C3 | C4 | C5 | 0.2° | 0.6° |
C2 | C3 | C4 | H2 | 179.8° | 179.7° |
C3 | C2 | C7 | H4 | 179.5° | 180.0° |
C3 | C2 | N2 | H5 | 160.8° | 34.4° |
N6 | C9 | C10 | C11 | 179.9° | 179.8° |
N6 | C9 | C10 | H6 | 0.1° | 0.3° |
N6 | C9 | C18 | H14 | 0.0° | 0.2° |
C6 | C5 | C4 | C3 | 0.2° | 0.3° |
C6 | C5 | C4 | S | 179.6° | 180.0° |
C6 | C5 | S | O | 104.5° | 23.5° |
C6 | C5 | S | O1 | 24.5° | 156.5° |
C6 | C5 | S | N3 | 140.3° | 90.0° |
C6 | C5 | C4 | H2 | 179.8° | 180.0° |
C5 | C6 | C7 | H4 | 179.9° | 179.8° |
O5 | C16 | C14 | H12 | 180.0° | 179.9° |
C16 | O5 | C13 | C12 | 179.9° | 180.0° |
C16 | O5 | C13 | N7 | 0.0° | 0.0° |
O5 | C16 | C14 | N7 | 0.0° | 0.0° |
O5 | C16 | C14 | C15 | 178.6° | 180.0° |
C13 | O5 | C16 | C14 | 0.0° | 0.0° |
O5 | C13 | C12 | N7 | 179.9° | 179.9° |
O5 | C13 | C12 | C11 | 154.7° | 0.1° |
O5 | C13 | N7 | C14 | 0.0° | 0.0° |
C13 | O5 | C16 | H12 | 180.0° | 179.9° |
C9 | C10 | C11 | C12 | 0.3° | 0.1° |
C9 | C10 | C11 | H6 | 180.0° | 180.0° |
C9 | C10 | C11 | H7 | 179.7° | 180.0° |
C10 | C9 | C18 | H14 | 179.8° | 180.0° |
C10 | C9 | N6 | H16 | 77.4° | 34.7° |
C16 | C14 | N7 | C13 | 0.0° | 0.0° |
C16 | C14 | N7 | C15 | 178.8° | 180.0° |
C16 | C14 | C15 | O4 | 31.3° | 0.0° |
C16 | C14 | C15 | O3 | 149.9° | 180.0° |
C3 | C4 | C5 | H2 | 180.0° | 179.8° |
C3 | C4 | C5 | S | 179.8° | 179.7° |
C12 | C13 | N7 | C14 | 179.8° | 180.0° |
C13 | C12 | C11 | C10 | 179.9° | 180.0° |
C13 | C12 | C11 | H7 | 0.1° | 0.1° |
C13 | C12 | C17 | H13 | 0.1° | 0.0° |
C11 | C12 | C13 | N7 | 25.2° | 180.0° |
C12 | C11 | C10 | H7 | 180.0° | 179.9° |
C12 | C11 | C10 | H6 | 179.7° | 180.0° |
C11 | C12 | C17 | H13 | 179.4° | 179.9° |
C13 | N7 | C14 | C15 | 178.8° | 180.0° |
C4 | C5 | S | O | 75.1° | 156.5° |
C4 | C5 | S | O1 | 155.9° | 23.5° |
C4 | C5 | S | N3 | 40.2° | 90.0° |
C4 | C5 | C6 | H3 | 179.8° | 180.0° |
C5 | C4 | C3 | H15 | 179.8° | 180.0° |
C5 | S | O | O1 | 124.6° | 123.0° |
C5 | S | O | N3 | 113.1° | 114.1° |
C5 | S | O1 | N3 | 114.7° | 114.1° |
S | C5 | C4 | H2 | 0.2° | 0.0° |
S | C5 | C6 | H3 | 0.2° | 0.0° |
C5 | S | N3 | H8 | 180.0° | 150.0° |
C5 | S | N3 | H9 | 60.0° | 30.0° |
O | S | O1 | N3 | 123.1° | 122.9° |
O | S | N3 | H8 | 66.7° | 36.5° |
O | S | N3 | H9 | 53.3° | 143.6° |
N7 | C14 | C15 | O4 | 147.3° | 179.9° |
N7 | C14 | C15 | O3 | 31.6° | 0.0° |
N7 | C14 | C16 | H12 | 180.0° | 179.9° |
C14 | C15 | O4 | O3 | 178.8° | 180.0° |
C14 | C15 | O3 | H1 | 178.7° | 180.0° |
C15 | C14 | C16 | H12 | 1.3° | 0.1° |
O1 | S | N3 | H8 | 61.9° | 96.5° |
O1 | S | N3 | H9 | 178.1° | 83.5° |
S | N3 | H8 | H9 | 120.0° | 179.9° |
O4 | C15 | O3 | H1 | 0.0° | 0.0° |
H2 | C4 | C3 | H15 | 0.2° | 0.2° |
H3 | C6 | C7 | H4 | 0.1° | 0.2° |
H6 | C10 | C11 | H7 | 0.3° | 0.0° |
H13 | C17 | C18 | H14 | 0.4° | 0.1° |