Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

M3D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C24C25sing1.53Å1.54Å
C24N2sing1.47Å1.47Å
C25O4sing1.43Å1.44Å
O4C26sing1.43Å1.42Å
C27N2sing1.47Å1.46Å
C27C26sing1.53Å1.54Å
N2C23sing1.47Å1.45Å
C23C22sing1.53Å1.53Å
C6C5doub1.31Å1.42ÅAromatic
C6C7sing1.47Å1.40ÅAromatic
C5C4sing1.48Å1.42ÅAromatic
C22N1sing1.46Å1.44Å
N1C15sing1.35Å1.34Å
C7C8doub1.31Å1.41ÅAromatic
C4C1sing1.47Å1.46Å
C4C3doub1.31Å1.42ÅAromatic
C1C2doub1.29Å1.35Å
C2C15sing1.47Å1.47Å
C2C9sing1.47Å1.49Å
C15O2doub1.21Å1.23Å
C8C3sing1.48Å1.41ÅAromatic
C3O1sing1.36Å1.36Å
C14C9doub1.32Å1.42ÅAromatic
C14C13sing1.47Å1.42ÅAromatic
C9C10sing1.47Å1.41ÅAromatic
C13C12doub1.31Å1.41ÅAromatic
C10O1sing1.35Å1.36Å
C10C11doub1.32Å1.41ÅAromatic
C12C11sing1.47Å1.41ÅAromatic
C12C16sing1.47Å1.48Å
C16C17doub1.38Å1.42ÅAromatic
C16C21sing1.38Å1.43ÅAromatic
C17C18sing1.38Å1.42ÅAromatic
C21C20doub1.40Å1.42ÅAromatic
C18C19doub1.39Å1.41ÅAromatic
C20C19sing1.40Å1.42ÅAromatic
C20C28sing1.43Å1.47Å
C19O3sing1.36Å1.36Å
C28N3trip1.14Å1.17Å
C1H1sing1.08Å1.08Å
O3H2sing0.97Å0.95Å
C11H3sing1.08Å1.08Å
C13H4sing1.08Å1.08Å
C14H5sing1.08Å1.08Å
C17H6sing1.08Å1.08Å
C18H7sing1.08Å1.08Å
C21H8sing1.08Å1.08Å
C22H9sing1.09Å1.10Å
C22H10sing1.09Å1.10Å
C23H11sing1.09Å1.10Å
C23H12sing1.09Å1.10Å
C24H13sing1.09Å1.10Å
C24H14sing1.09Å1.10Å
C25H15sing1.09Å1.10Å
C25H16sing1.09Å1.10Å
C26H17sing1.09Å1.10Å
C26H18sing1.09Å1.10Å
C27H19sing1.09Å1.10Å
C27H20sing1.09Å1.10Å
C5H21sing1.08Å1.08Å
C6H22sing1.08Å1.08Å
C7H23sing1.08Å1.08Å
C8H24sing1.08Å1.08Å
N1H25sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C25C24N2108.6°109.2°
C24C25O4108.7°109.2°
C25C24H13109.7°109.5°
C25C24H14109.7°109.5°
C24C25H15109.6°109.5°
C24C25H16109.7°109.5°
C24N2C27110.2°110.7°
C24N2C23114.2°111.0°
N2C24H13109.7°109.5°
N2C24H14109.7°109.5°
C25O4C26114.6°113.7°
O4C25H15109.7°109.5°
O4C25H16109.7°109.5°
O4C26C27105.7°109.3°
O4C26H17110.4°109.5°
O4C26H18110.4°109.6°
N2C27C26106.2°109.3°
C27N2C23115.8°111.0°
N2C27H19110.3°109.5°
N2C27H20110.3°109.5°
C27C26H17110.4°109.5°
C27C26H18110.4°109.5°
C26C27H19110.3°109.5°
C26C27H20110.3°109.5°
N2C23C22110.1°109.5°
N2C23H11109.3°109.5°
N2C23H12109.3°109.5°
C23C22N1111.7°109.5°
C23C22H9108.9°109.4°
C23C22H10108.9°109.5°
C22C23H11109.3°109.4°
C22C23H12109.3°109.5°
C5C6C7120.4°119.9°
C6C5C4119.7°120.5°
C6C5H21120.1°119.7°
C5C6H22119.8°120.1°
C6C7C8120.3°119.7°
C7C6H22119.8°120.1°
C6C7H23119.8°120.2°
C5C4C1119.6°118.3°
C5C4C3119.3°119.5°
C4C5H21120.2°119.7°
C22N1C15127.0°120.0°
N1C22H9108.9°109.5°
N1C22H10108.9°109.5°
C22N1H25116.5°120.0°
N1C15C2114.4°120.0°
N1C15O2121.6°120.0°
C15N1H25116.5°120.0°
C7C8C3119.5°120.5°
C8C7H23119.8°120.1°
C7C8H24120.3°119.8°
C1C4C3121.1°122.2°
C4C1C2127.5°126.7°
C4C1H1116.3°116.6°
C4C3C8120.8°119.8°
C4C3O1120.6°122.0°
C1C2C15114.4°117.7°
C1C2C9126.1°124.6°
C2C1H1116.3°116.6°
C15C2C9119.4°117.6°
C2C15O2123.9°120.0°
C2C9C14121.9°120.4°
C2C9C10121.3°119.5°
C8C3O1118.6°118.2°
C3C8H24120.3°119.8°
C3O1C10119.5°118.6°
C9C14C13121.9°120.0°
C14C9C10116.7°120.1°
C9C14H5119.0°119.9°
C14C13C12120.8°119.9°
C14C13H4119.5°120.1°
C13C14H5119.1°120.0°
C9C10O1121.1°120.1°
C9C10C11121.4°119.8°
C13C12C11117.0°120.2°
C13C12C16121.4°119.9°
C12C13H4119.6°120.0°
O1C10C11117.3°120.1°
C10C11C12122.1°120.0°
C10C11H3118.9°120.0°
C11C12C16121.5°119.9°
C12C11H3119.0°120.0°
C12C16C17120.5°119.9°
C12C16C21122.3°119.8°
C17C16C21117.1°120.3°
C16C17C18121.7°120.4°
C16C17H6119.2°119.8°
C16C21C20121.7°119.9°
C16C21H8119.1°120.1°
C17C18C19119.8°120.1°
C18C17H6119.2°119.8°
C17C18H7120.1°119.9°
C21C20C19119.5°119.6°
C21C20C28119.4°120.2°
C20C21H8119.2°120.0°
C18C19C20119.8°119.7°
C18C19O3118.4°120.2°
C19C18H7120.1°119.9°
C19C20C28121.1°120.2°
C20C19O3121.7°120.1°
C20C28N3178.0°180.0°
C19O3H2109.5°114.0°
H9C22H10109.5°109.5°
H11C23H12109.5°109.5°
H13C24H14109.5°109.6°
H15C25H16109.5°109.6°
H17C26H18109.5°109.5°
H19C27H20109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C25C24N2H13119.9°119.9°
C25C24N2H14119.9°119.9°
C24C25O4H15119.9°119.9°
C24C25O4H16119.9°119.9°
C24C25O4C2657.8°58.7°
C25C24N2C2760.4°58.6°
C25C24N2C23167.3°177.6°
C25C24H13H14120.4°120.1°
C24C25H15H16120.3°120.1°
N2C24C25O452.9°56.9°
C24N2C27C23131.5°123.8°
C24N2C27C2666.1°58.6°
C24N2C23C2267.5°170.0°
C24N2C23H1152.6°70.0°
C24N2C23H12172.4°50.0°
N2C24H13H14120.4°120.1°
N2C24C25H15172.7°176.8°
N2C24C25H1667.0°63.0°
C24N2C27H19174.4°61.3°
C24N2C27H2053.3°178.6°
C25O4C26C2763.2°58.7°
O4C25C24H13172.7°176.8°
O4C25C24H1467.0°63.1°
O4C25H15H16120.4°120.2°
C25O4C26H17177.3°61.2°
C25O4C26H1856.2°178.7°
O4C26C27N264.6°56.9°
O4C26C27H17119.4°120.0°
O4C26C27H18119.4°120.0°
C26O4C25H15177.7°178.6°
C26O4C25H1662.1°61.2°
O4C26H17H18121.7°120.1°
O4C26C27H19175.9°63.1°
O4C26C27H2054.9°176.8°
N2C27C26H19119.5°119.9°
N2C27C26H20119.5°120.0°
C27N2C23C22162.9°66.4°
C27N2C23H1177.0°53.6°
C27N2C23H1242.8°173.6°
C27N2C24H13179.8°178.5°
C27N2C24H1459.5°61.3°
N2C27C26H17176.0°63.1°
N2C27C26H1854.8°176.9°
N2C27H19H20121.5°120.1°
C26C27N2C23162.4°177.6°
C27C26H17H18121.7°120.1°
C26C27H19H20121.5°120.1°
N2C23C22H11120.1°120.0°
N2C23C22H12120.1°120.0°
N2C23C22N1174.4°180.0°
N2C23C22H954.0°60.0°
N2C23C22H1065.3°59.9°
N2C23H11H12119.7°120.0°
C23N2C24H1347.4°57.7°
C23N2C24H1472.8°62.5°
C23N2C27H1942.9°62.4°
C23N2C27H2078.2°57.6°
C23C22N1H9120.3°119.9°
C23C22N1H10120.4°120.0°
C23C22N1C1588.3°180.0°
C23C22H9H10119.0°119.9°
C22C23H11H12119.7°120.0°
C23C22N1H2591.7°0.0°
C5C6C7H22180.0°180.0°
C6C5C4H21180.0°180.0°
C5C6C7C80.3°0.9°
C6C5C4C1178.3°178.0°
C6C5C4C30.3°1.9°
C5C6C7H23179.7°179.1°
C7C6C5C40.6°0.1°
C6C7C8H23180.0°180.0°
C6C7C8C32.0°0.0°
C7C6C5H21179.4°180.0°
C6C7C8H24178.0°180.0°
C5C4C1C3178.0°179.9°
C5C4C1C2144.3°139.6°
C5C4C3C82.1°2.8°
C5C4C3O1179.8°177.0°
C5C4C1H135.7°40.0°
C4C5C6H22179.4°179.9°
C22N1C15H25180.0°180.0°
C22N1C15C2177.0°175.1°
C22N1C15O20.2°5.0°
N1C22H9H10119.0°120.1°
N1C22C23H1165.5°60.0°
N1C22C23H1254.3°60.0°
N1C15C2C153.5°173.3°
N1C15C2O2176.7°179.9°
N1C15C2C9129.8°6.7°
C15N1C22H932.1°60.0°
C15N1C22H10151.4°60.0°
C7C8C3C43.0°2.0°
C7C8C3H24180.0°179.9°
C7C8C3O1179.3°177.9°
C8C7C6H22179.7°179.1°
C4C1C2H1180.0°179.6°
C4C1C2C15179.6°178.7°
C4C1C2C93.2°1.3°
C1C4C3C8179.9°177.1°
C1C4C3O12.3°3.1°
C1C4C5H211.7°2.0°
C3C4C1C233.7°40.5°
C4C3C8O1177.7°179.8°
C4C3O1C1066.8°63.9°
C3C4C1H1146.3°139.9°
C3C4C5H21179.7°178.1°
C4C3C8H24177.0°178.1°
C1C2C15C9176.7°180.0°
C1C2C15O2123.2°6.7°
C1C2C9C14153.0°143.3°
C1C2C9C1028.9°37.6°
C15C2C9C1430.7°36.7°
C15C2C9C10147.4°142.4°
C15C2C1H10.4°0.9°
C2C15N1H253.0°4.9°
C9C2C15O253.5°173.4°
C2C9C14C10178.2°179.1°
C2C9C14C13177.8°177.8°
C2C9C10O14.2°4.8°
C2C9C10C11178.5°176.9°
C9C2C1H1176.8°179.1°
C2C9C14H52.1°2.3°
O2C15N1H25179.8°175.0°
C8C3O1C10115.5°115.9°
C3C8C7H23178.0°179.9°
C3O1C10C967.5°61.3°
C3O1C10C11118.0°117.0°
O1C3C8H240.6°2.1°
C9C14C13H5180.0°179.9°
C9C14C13C120.6°0.9°
C14C9C10O1173.9°176.1°
C14C9C10C110.4°2.2°
C9C14C13H4179.4°179.7°
C13C14C9C100.3°1.3°
C14C13C12H4180.0°178.7°
C14C13C12C110.2°2.3°
C14C13C12C16177.7°179.0°
C9C10O1C11174.5°178.3°
C9C10C11C120.8°0.9°
C9C10C11H3179.2°179.1°
C10C9C14H5179.7°178.6°
C13C12C11C100.5°1.3°
C13C12C11C16177.9°178.7°
C13C12C16C1715.7°178.7°
C13C12C16C21161.8°1.6°
C13C12C11H3179.5°178.7°
C12C13C14H5179.4°179.1°
O1C10C11C12173.7°177.4°
O1C10C11H36.3°2.6°
C10C11C12H3180.0°180.0°
C10C11C12C16178.4°179.9°
C11C12C16C17166.5°0.0°
C11C12C16C2116.0°179.7°
C11C12C13H4179.8°179.0°
C12C16C17C21177.6°179.7°
C12C16C17C18178.9°180.0°
C12C16C21C20175.4°179.7°
C16C12C11H31.6°0.0°
C16C12C13H42.3°0.2°
C12C16C17H61.1°0.0°
C12C16C21H84.6°0.0°
C16C17C18H6180.0°180.0°
C17C16C21C202.2°0.6°
C16C17C18C196.8°0.1°
C16C17C18H7173.2°180.0°
C17C16C21H8177.8°179.7°
C21C16C17C183.5°0.3°
C16C21C20H8180.0°179.6°
C16C21C20C194.6°0.6°
C16C21C20C28177.3°179.7°
C21C16C17H6176.5°179.7°
C17C18C19H7180.0°179.9°
C17C18C19C204.3°0.1°
C17C18C19O3179.4°180.0°
C21C20C19C181.2°0.3°
C21C20C19C28178.1°179.7°
C21C20C19O3175.0°179.7°
C21C20C28N387.6°16.5°
C18C19C20O3176.2°180.0°
C18C19C20C28179.4°180.0°
C18C19O3H2180.0°89.9°
C19C18C17H6173.2°179.9°
C19C20C28N394.2°163.3°
C20C19O3H23.7°90.0°
C20C19C18H7175.7°180.0°
C19C20C21H8175.4°179.8°
C28C20C19O33.2°0.0°
C28C20C21H82.7°0.0°
O3C19C18H70.6°0.1°
H4C13C14H50.6°0.4°
H6C17C18H76.8°0.0°
H9C22C23H11174.1°60.0°
H9C22C23H1266.1°180.0°
H9C22N1H25148.0°120.0°
H10C22C23H1154.9°179.9°
H10C22C23H12174.6°60.0°
H10C22N1H2528.6°120.0°
H13C24C25H1567.4°63.3°
H13C24C25H1652.8°56.9°
H14C24C25H1552.9°56.8°
H14C24C25H16173.1°177.0°
H17C26C27H1956.5°177.0°
H17C26C27H2064.5°56.8°
H18C26C27H1964.7°56.9°
H18C26C27H20174.3°63.2°
H21C5C6H220.6°0.0°
H22C6C7H230.3°0.9°
H23C7C8H242.0°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon