Obsolete: M1F
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP3 | doub | 1.48Å | 1.52Å | |
| P | OP1 | sing | 1.61Å | 1.51Å | |
| P | O1' | sing | 1.61Å | 1.64Å | |
| P | OP2 | sing | 1.61Å | 1.52Å | |
| C1 | O1 | sing | 1.43Å | 1.45Å | |
| C1 | C2 | sing | 1.53Å | 1.53Å | |
| C1 | O5 | sing | 1.43Å | 1.44Å | |
| O1 | C4' | sing | 1.43Å | 1.44Å | |
| C2 | O2 | sing | 1.43Å | 1.44Å | |
| C2 | C3 | sing | 1.53Å | 1.52Å | |
| C3 | O3 | sing | 1.43Å | 1.43Å | |
| C3 | C4 | sing | 1.53Å | 1.54Å | |
| C4 | O4 | sing | 1.43Å | 1.40Å | |
| C4 | C5 | sing | 1.53Å | 1.52Å | |
| C5 | O5 | sing | 1.43Å | 1.43Å | |
| C5 | C6 | sing | 1.53Å | 1.49Å | |
| C6 | O6 | sing | 1.43Å | 1.41Å | |
| C1' | C2' | sing | 1.53Å | 1.55Å | |
| C1' | O1' | sing | 1.43Å | 1.47Å | |
| C1' | O5' | sing | 1.43Å | 1.44Å | |
| C2' | O2' | sing | 1.43Å | 1.45Å | |
| C2' | C3' | sing | 1.53Å | 1.55Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | C4' | sing | 1.53Å | 1.57Å | |
| C4' | C5' | sing | 1.53Å | 1.57Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| C5' | C6' | sing | 1.53Å | 1.53Å | |
| C6' | O6' | sing | 1.43Å | 1.44Å | |
| C1 | H1 | sing | 1.09Å | 1.10Å | |
| C2 | H2 | sing | 1.09Å | 1.10Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C6 | H6A | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| O6 | HO6 | sing | 0.97Å | 0.95Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C6' | H6' | sing | 1.09Å | 1.10Å | |
| C6' | H6'A | sing | 1.09Å | 1.10Å | |
| O6' | HO6' | sing | 0.97Å | 0.95Å | |
| OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP3 | P | OP1 | 113.0° | 109.5° |
| OP3 | P | O1' | 112.0° | 109.5° |
| OP3 | P | OP2 | 108.7° | 109.5° |
| OP1 | P | O1' | 100.0° | 109.4° |
| OP1 | P | OP2 | 115.2° | 109.4° |
| P | OP1 | HOP1 | 109.5° | 114.0° |
| O1' | P | OP2 | 107.5° | 109.5° |
| P | O1' | C1' | 121.8° | 123.0° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| O1 | C1 | C2 | 112.2° | 109.5° |
| O1 | C1 | O5 | 111.4° | 109.5° |
| C1 | O1 | C4' | 110.4° | 114.0° |
| O1 | C1 | H1 | 107.1° | 109.5° |
| C2 | C1 | O5 | 112.4° | 109.4° |
| C1 | C2 | O2 | 109.2° | 109.5° |
| C1 | C2 | C3 | 113.8° | 109.2° |
| C2 | C1 | H1 | 106.1° | 109.5° |
| C1 | C2 | H2 | 107.9° | 109.5° |
| C1 | O5 | C5 | 114.9° | 114.1° |
| O5 | C1 | H1 | 107.2° | 109.5° |
| O1 | C4' | C3' | 111.8° | 109.5° |
| O1 | C4' | C5' | 106.3° | 109.5° |
| O1 | C4' | H4' | 108.3° | 109.5° |
| O2 | C2 | C3 | 108.6° | 109.5° |
| O2 | C2 | H2 | 109.1° | 109.5° |
| C2 | O2 | HO2 | 109.5° | 114.0° |
| C2 | C3 | O3 | 106.5° | 109.5° |
| C2 | C3 | C4 | 109.3° | 109.0° |
| C3 | C2 | H2 | 108.1° | 109.6° |
| C2 | C3 | H3 | 108.7° | 109.5° |
| O3 | C3 | C4 | 113.8° | 109.6° |
| O3 | C3 | H3 | 110.0° | 109.6° |
| C3 | O3 | HO3 | 109.5° | 114.0° |
| C3 | C4 | O4 | 112.6° | 109.5° |
| C3 | C4 | C5 | 107.8° | 109.2° |
| C4 | C3 | H3 | 108.5° | 109.6° |
| C3 | C4 | H4 | 108.7° | 109.5° |
| O4 | C4 | C5 | 108.0° | 109.5° |
| O4 | C4 | H4 | 110.6° | 109.5° |
| C4 | O4 | HO4 | 109.5° | 114.1° |
| C4 | C5 | O5 | 109.7° | 109.4° |
| C4 | C5 | C6 | 111.7° | 109.5° |
| C5 | C4 | H4 | 109.0° | 109.6° |
| C4 | C5 | H5 | 109.3° | 109.5° |
| O5 | C5 | C6 | 106.0° | 109.4° |
| O5 | C5 | H5 | 110.4° | 109.5° |
| C5 | C6 | O6 | 105.5° | 109.5° |
| C6 | C5 | H5 | 109.6° | 109.5° |
| C5 | C6 | H6A | 110.5° | 109.4° |
| C5 | C6 | H6 | 110.4° | 109.5° |
| O6 | C6 | H6A | 110.4° | 109.5° |
| O6 | C6 | H6 | 110.4° | 109.5° |
| C6 | O6 | HO6 | 109.5° | 114.0° |
| C2' | C1' | O1' | 117.2° | 109.5° |
| C2' | C1' | O5' | 100.7° | 109.4° |
| C1' | C2' | O2' | 116.0° | 109.5° |
| C1' | C2' | C3' | 106.5° | 109.1° |
| C2' | C1' | H1' | 108.5° | 109.4° |
| C1' | C2' | H2' | 105.3° | 109.5° |
| O1' | C1' | O5' | 110.5° | 109.5° |
| O1' | C1' | H1' | 109.5° | 109.5° |
| C1' | O5' | C5' | 112.4° | 114.1° |
| O5' | C1' | H1' | 110.0° | 109.5° |
| O2' | C2' | C3' | 116.3° | 109.5° |
| O2' | C2' | H2' | 106.4° | 109.5° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C2' | C3' | O3' | 109.0° | 109.5° |
| C2' | C3' | C4' | 106.6° | 109.0° |
| C3' | C2' | H2' | 105.3° | 109.6° |
| C2' | C3' | H3' | 108.3° | 109.6° |
| O3' | C3' | C4' | 115.0° | 109.5° |
| O3' | C3' | H3' | 109.6° | 109.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C4' | C5' | 116.5° | 109.2° |
| C4' | C3' | H3' | 108.1° | 109.6° |
| C3' | C4' | H4' | 106.8° | 109.5° |
| C4' | C5' | O5' | 112.4° | 109.4° |
| C4' | C5' | C6' | 117.1° | 109.5° |
| C5' | C4' | H4' | 106.8° | 109.6° |
| C4' | C5' | H5' | 106.5° | 109.5° |
| O5' | C5' | C6' | 105.7° | 109.5° |
| O5' | C5' | H5' | 107.9° | 109.5° |
| C5' | C6' | O6' | 111.4° | 109.5° |
| C6' | C5' | H5' | 106.9° | 109.5° |
| C5' | C6' | H6' | 109.0° | 109.5° |
| C5' | C6' | H6'A | 109.0° | 109.5° |
| O6' | C6' | H6' | 109.0° | 109.5° |
| O6' | C6' | H6'A | 109.0° | 109.5° |
| C6' | O6' | HO6' | 109.5° | 114.0° |
| H6A | C6 | H6 | 109.5° | 109.4° |
| H6' | C6' | H6'A | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | O1' | 119.3° | 120.0° |
| OP3 | P | OP1 | OP2 | 125.8° | 120.0° |
| OP3 | P | O1' | OP2 | 119.4° | 120.1° |
| OP3 | P | O1' | C1' | 178.8° | 54.9° |
| OP3 | P | OP1 | HOP1 | 0.0° | 180.0° |
| OP3 | P | OP2 | HOP2 | 0.0° | 59.9° |
| OP1 | P | O1' | OP2 | 120.6° | 119.9° |
| OP1 | P | O1' | C1' | 58.8° | 65.1° |
| OP1 | P | OP2 | HOP2 | 128.0° | 60.1° |
| P | O1' | C1' | C2' | 178.9° | 150.0° |
| P | O1' | C1' | O5' | 64.4° | 90.0° |
| P | O1' | C1' | H1' | 56.9° | 30.1° |
| O1' | P | OP1 | HOP1 | 119.3° | 59.9° |
| O1' | P | OP2 | HOP2 | 121.5° | 180.0° |
| OP2 | P | O1' | C1' | 61.8° | 175.0° |
| OP2 | P | OP1 | HOP1 | 125.8° | 60.0° |
| O1 | C1 | C2 | O5 | 126.6° | 119.9° |
| O1 | C1 | C2 | H1 | 116.6° | 120.1° |
| O1 | C1 | O5 | H1 | 116.8° | 120.1° |
| O1 | C1 | C2 | O2 | 39.2° | 57.6° |
| O1 | C1 | C2 | C3 | 82.4° | 62.3° |
| O1 | C1 | O5 | C5 | 77.2° | 58.8° |
| C1 | O1 | C4' | C3' | 92.4° | 85.2° |
| C1 | O1 | C4' | C5' | 139.4° | 155.1° |
| O1 | C1 | C2 | H2 | 157.7° | 177.7° |
| C1 | O1 | C4' | H4' | 25.0° | 34.9° |
| C2 | C1 | O5 | H1 | 116.2° | 120.0° |
| C2 | C1 | O1 | C4' | 166.0° | 167.6° |
| C1 | C2 | O2 | C3 | 124.7° | 119.7° |
| C1 | C2 | O2 | H2 | 117.7° | 120.1° |
| C1 | C2 | C3 | H2 | 119.9° | 120.0° |
| C1 | C2 | C3 | O3 | 172.7° | 176.9° |
| C1 | C2 | C3 | C4 | 49.4° | 57.0° |
| C2 | C1 | O5 | C5 | 49.8° | 61.2° |
| C1 | C2 | O2 | HO2 | 180.0° | 60.0° |
| C1 | C2 | C3 | H3 | 68.8° | 62.9° |
| O5 | C1 | O1 | C4' | 66.9° | 72.5° |
| O5 | C1 | C2 | O2 | 165.7° | 177.5° |
| O5 | C1 | C2 | C3 | 44.2° | 57.6° |
| C1 | O5 | C5 | C4 | 60.7° | 61.2° |
| C1 | O5 | C5 | C6 | 178.6° | 178.9° |
| O5 | C1 | C2 | H2 | 75.7° | 62.4° |
| C1 | O5 | C5 | H5 | 59.9° | 58.9° |
| O1 | C4' | C3' | C2' | 159.9° | 176.9° |
| O1 | C4' | C3' | O3' | 79.2° | 63.2° |
| O1 | C4' | C3' | C5' | 122.5° | 119.9° |
| O1 | C4' | C3' | H4' | 118.3° | 120.1° |
| O1 | C4' | C5' | H4' | 115.5° | 120.2° |
| O1 | C4' | C5' | O5' | 157.0° | 177.5° |
| O1 | C4' | C5' | C6' | 80.4° | 62.5° |
| C4' | O1 | C1 | H1 | 50.0° | 47.5° |
| O1 | C4' | C3' | H3' | 43.6° | 56.9° |
| O1 | C4' | C5' | H5' | 39.1° | 57.5° |
| O2 | C2 | C3 | H2 | 118.3° | 120.1° |
| O2 | C2 | C3 | O3 | 65.4° | 63.3° |
| O2 | C2 | C3 | C4 | 171.3° | 176.9° |
| O2 | C2 | C1 | H1 | 77.4° | 62.5° |
| O2 | C2 | C3 | H3 | 53.1° | 57.0° |
| C2 | C3 | O3 | C4 | 120.5° | 119.5° |
| C2 | C3 | O3 | H3 | 117.6° | 120.2° |
| C2 | C3 | C4 | H3 | 118.4° | 119.8° |
| C2 | C3 | C4 | O4 | 177.2° | 176.9° |
| C2 | C3 | C4 | C5 | 58.2° | 57.0° |
| C3 | C2 | C1 | H1 | 161.0° | 177.6° |
| C3 | C2 | O2 | HO2 | 55.4° | 179.7° |
| C2 | C3 | O3 | HO3 | 180.0° | 60.0° |
| C2 | C3 | C4 | H4 | 59.9° | 63.0° |
| O3 | C3 | C4 | H3 | 122.7° | 120.3° |
| O3 | C3 | C4 | O4 | 63.9° | 63.3° |
| O3 | C3 | C4 | C5 | 177.1° | 176.8° |
| O3 | C3 | C2 | H2 | 52.9° | 56.9° |
| O3 | C3 | C4 | H4 | 59.0° | 56.9° |
| C3 | C4 | O4 | C5 | 118.9° | 119.7° |
| C3 | C4 | O4 | H4 | 121.9° | 120.1° |
| C3 | C4 | C5 | H4 | 117.9° | 119.9° |
| C3 | C4 | C5 | O5 | 63.7° | 57.6° |
| C3 | C4 | C5 | C6 | 179.1° | 177.6° |
| C4 | C3 | C2 | H2 | 70.4° | 63.0° |
| C4 | C3 | O3 | HO3 | 59.5° | 179.6° |
| C3 | C4 | O4 | HO4 | 180.0° | 60.0° |
| C3 | C4 | C5 | H5 | 57.5° | 62.3° |
| O4 | C4 | C5 | H4 | 120.2° | 120.2° |
| O4 | C4 | C5 | O5 | 174.4° | 177.5° |
| O4 | C4 | C5 | C6 | 57.2° | 62.5° |
| O4 | C4 | C3 | H3 | 58.9° | 57.0° |
| O4 | C4 | C5 | H5 | 64.4° | 57.6° |
| C4 | C5 | O5 | C6 | 120.8° | 119.9° |
| C4 | C5 | O5 | H5 | 120.5° | 120.0° |
| C4 | C5 | C6 | H5 | 121.3° | 120.1° |
| C4 | C5 | C6 | O6 | 46.7° | 175.0° |
| C5 | C4 | C3 | H3 | 60.2° | 62.9° |
| C5 | C4 | O4 | HO4 | 61.1° | 179.7° |
| C4 | C5 | C6 | H6A | 166.0° | 55.0° |
| C4 | C5 | C6 | H6 | 72.7° | 64.9° |
| O5 | C5 | C6 | H5 | 119.2° | 120.0° |
| O5 | C5 | C6 | O6 | 72.8° | 65.1° |
| C5 | O5 | C1 | H1 | 166.0° | 178.9° |
| O5 | C5 | C4 | H4 | 54.2° | 62.3° |
| O5 | C5 | C6 | H6A | 46.5° | 174.9° |
| O5 | C5 | C6 | H6 | 167.9° | 55.0° |
| C5 | C6 | O6 | H6A | 119.4° | 119.9° |
| C5 | C6 | O6 | H6 | 119.3° | 120.0° |
| C6 | C5 | C4 | H4 | 63.1° | 57.6° |
| C5 | C6 | H6A | H6 | 121.8° | 120.0° |
| C5 | C6 | O6 | HO6 | 180.0° | 180.0° |
| O6 | C6 | C5 | H5 | 168.0° | 54.9° |
| O6 | C6 | H6A | H6 | 121.8° | 120.1° |
| C2' | C1' | O1' | O5' | 114.6° | 120.0° |
| C2' | C1' | O1' | H1' | 124.1° | 120.0° |
| C2' | C1' | O5' | H1' | 114.4° | 119.9° |
| C1' | C2' | O2' | C3' | 126.4° | 119.6° |
| C1' | C2' | O2' | H2' | 116.7° | 120.2° |
| C1' | C2' | C3' | H2' | 111.5° | 119.9° |
| C1' | C2' | C3' | O3' | 174.6° | 176.8° |
| C1' | C2' | C3' | C4' | 60.7° | 57.0° |
| C2' | C1' | O5' | C5' | 74.3° | 61.2° |
| C1' | C2' | O2' | HO2' | 180.0° | 60.1° |
| C1' | C2' | C3' | H3' | 55.4° | 63.0° |
| O1' | C1' | O5' | H1' | 121.0° | 120.1° |
| O1' | C1' | C2' | O2' | 90.8° | 57.5° |
| O1' | C1' | C2' | C3' | 40.4° | 62.4° |
| O1' | C1' | O5' | C5' | 50.3° | 58.8° |
| O1' | C1' | C2' | H2' | 151.9° | 177.6° |
| O5' | C1' | C2' | O2' | 149.3° | 177.5° |
| O5' | C1' | C2' | C3' | 79.5° | 57.6° |
| C1' | O5' | C5' | C4' | 51.3° | 61.2° |
| C1' | O5' | C5' | C6' | 179.8° | 178.8° |
| O5' | C1' | C2' | H2' | 32.0° | 62.3° |
| C1' | O5' | C5' | H5' | 65.8° | 58.8° |
| O2' | C2' | C3' | H2' | 117.5° | 120.2° |
| O2' | C2' | C3' | O3' | 43.6° | 63.3° |
| O2' | C2' | C3' | C4' | 168.3° | 176.9° |
| O2' | C2' | C1' | H1' | 33.8° | 62.5° |
| O2' | C2' | C3' | H3' | 75.6° | 56.9° |
| C2' | C3' | O3' | C4' | 119.6° | 119.6° |
| C2' | C3' | O3' | H3' | 118.4° | 120.2° |
| C2' | C3' | C4' | H3' | 116.3° | 120.0° |
| C2' | C3' | C4' | C5' | 37.3° | 57.0° |
| C3' | C2' | C1' | H1' | 165.0° | 177.6° |
| C3' | C2' | O2' | HO2' | 53.6° | 179.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 60.1° |
| C2' | C3' | C4' | H4' | 81.8° | 63.0° |
| O3' | C3' | C4' | H3' | 122.8° | 120.2° |
| O3' | C3' | C4' | C5' | 158.2° | 176.9° |
| O3' | C3' | C2' | H2' | 73.9° | 56.9° |
| O3' | C3' | C4' | H4' | 39.1° | 56.9° |
| C3' | C4' | C5' | H4' | 119.2° | 119.9° |
| C3' | C4' | C5' | O5' | 31.7° | 57.6° |
| C3' | C4' | C5' | C6' | 154.3° | 177.6° |
| C4' | C3' | C2' | H2' | 50.8° | 63.0° |
| C4' | C3' | O3' | HO3' | 60.4° | 179.6° |
| C3' | C4' | C5' | H5' | 86.3° | 62.4° |
| C4' | C5' | O5' | C6' | 128.9° | 120.0° |
| C4' | C5' | O5' | H5' | 117.1° | 120.0° |
| C4' | C5' | C6' | H5' | 119.2° | 120.0° |
| C4' | C5' | C6' | O6' | 43.9° | 175.9° |
| C5' | C4' | C3' | H3' | 78.9° | 63.0° |
| C4' | C5' | C6' | H6' | 164.2° | 55.9° |
| C4' | C5' | C6' | H6'A | 76.4° | 64.1° |
| O5' | C5' | C6' | H5' | 114.7° | 120.0° |
| O5' | C5' | C6' | O6' | 82.2° | 64.1° |
| C5' | O5' | C1' | H1' | 171.3° | 178.9° |
| O5' | C5' | C4' | H4' | 87.5° | 62.3° |
| O5' | C5' | C6' | H6' | 38.1° | 175.9° |
| O5' | C5' | C6' | H6'A | 157.6° | 55.9° |
| C5' | C6' | O6' | H6' | 120.3° | 120.0° |
| C5' | C6' | O6' | H6'A | 120.3° | 120.0° |
| C6' | C5' | C4' | H4' | 35.1° | 57.7° |
| C5' | C6' | H6' | H6'A | 119.2° | 120.0° |
| C5' | C6' | O6' | HO6' | 180.0° | 180.0° |
| O6' | C6' | C5' | H5' | 163.1° | 55.9° |
| O6' | C6' | H6' | H6'A | 119.1° | 120.0° |
| H1 | C1 | C2 | H2 | 41.1° | 57.6° |
| H2 | C2 | O2 | HO2 | 62.2° | 60.1° |
| H2 | C2 | C3 | H3 | 171.3° | 177.1° |
| H3 | C3 | O3 | HO3 | 62.4° | 60.2° |
| H3 | C3 | C4 | H4 | 178.2° | 177.2° |
| H4 | C4 | O4 | HO4 | 58.2° | 60.1° |
| H4 | C4 | C5 | H5 | 175.4° | 177.7° |
| H5 | C5 | C6 | H6A | 72.7° | 65.1° |
| H5 | C5 | C6 | H6 | 48.7° | 175.0° |
| H6A | C6 | O6 | HO6 | 60.6° | 60.0° |
| H6 | C6 | O6 | HO6 | 60.7° | 60.0° |
| H1' | C1' | C2' | H2' | 83.4° | 57.6° |
| H2' | C2' | O2' | HO2' | 63.3° | 60.1° |
| H2' | C2' | C3' | H3' | 167.0° | 177.1° |
| H3' | C3' | O3' | HO3' | 61.6° | 60.2° |
| H3' | C3' | C4' | H4' | 161.9° | 177.0° |
| H4' | C4' | C5' | H5' | 154.5° | 177.7° |
| H5' | C5' | C6' | H6' | 76.6° | 64.1° |
| H5' | C5' | C6' | H6'A | 42.8° | 175.9° |
| H6' | C6' | O6' | HO6' | 59.7° | 60.0° |
| H6'A | C6' | O6' | HO6' | 59.7° | 60.0° |
