English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

LZ5

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C2	doub	1.20Å	1.20Å
C2	N3	sing	1.35Å	1.35Å
C2	C10	sing	1.47Å	1.47Å
N3	C4	sing	1.40Å	1.40Å
C4	C5	sing	1.40Å	1.40Å	Aromatic
C4	C9	doub	1.39Å	1.39Å	Aromatic
C5	C6	doub	1.38Å	1.38Å	Aromatic
C6	C7	sing	1.38Å	1.38Å	Aromatic
C7	C8	doub	1.38Å	1.38Å	Aromatic
C8	C9	sing	1.38Å	1.38Å	Aromatic
C10	C11	sing	1.39Å	1.39Å	Aromatic
C10	N15	doub	1.31Å	1.31Å	Aromatic
C11	C12	doub	1.35Å	1.35Å	Aromatic
C12	N13	sing	1.34Å	1.34Å	Aromatic
N13	N15	sing	1.36Å	1.36Å	Aromatic
N3	H3	sing	1.00Å	1.00Å
C5	H5	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C7	H7	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
C11	H11	sing	1.08Å	1.08Å
N13	H13	sing	1.00Å	1.00Å
C12	H12	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C2	N3	122.8°	122.8°
O1	C2	C10	120.9°	120.9°
N3	C2	C10	116.3°	116.3°
C2	N3	C4	126.5°	126.5°
C2	N3	H3	116.7°	116.7°
C2	C10	C11	127.2°	127.2°
C2	C10	N15	120.7°	120.7°
N3	C4	C5	120.5°	120.5°
N3	C4	C9	120.4°	120.4°
C4	N3	H3	116.7°	116.7°
C5	C4	C9	119.2°	119.2°
C4	C5	C6	120.2°	120.2°
C4	C5	H5	119.9°	119.9°
C4	C9	C8	120.2°	120.2°
C4	C9	H9	119.9°	119.9°
C5	C6	C7	120.0°	120.0°
C6	C5	H5	119.9°	119.9°
C5	C6	H6	120.0°	120.0°
C6	C7	C8	120.2°	120.2°
C7	C6	H6	120.0°	120.0°
C6	C7	H7	119.9°	119.9°
C7	C8	C9	120.2°	120.2°
C8	C7	H7	119.9°	119.9°
C7	C8	H8	119.9°	119.9°
C8	C9	H9	119.9°	119.9°
C9	C8	H8	119.9°	119.9°
C11	C10	N15	112.0°	112.0°
C10	C11	C12	105.1°	105.1°
C10	C11	H11	127.4°	127.4°
C10	N15	N13	104.3°	104.3°
C11	C12	N13	106.9°	106.9°
C12	C11	H11	127.5°	127.5°
C11	C12	H12	126.6°	126.6°
C12	N13	N15	111.6°	111.6°
C12	N13	H13	124.2°	124.2°
N13	C12	H12	126.5°	126.5°
N15	N13	H13	124.2°	124.2°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C2	N3	C10	177.7°	177.7°
O1	C2	N3	C4	9.4°	9.4°
O1	C2	C10	C11	2.6°	2.6°
O1	C2	C10	N15	179.6°	179.6°
O1	C2	N3	H3	170.6°	170.6°
C2	N3	C4	H3	180.0°	180.0°
C2	N3	C4	C5	37.8°	37.8°
C2	N3	C4	C9	142.7°	142.7°
N3	C2	C10	C11	175.2°	175.2°
N3	C2	C10	N15	2.6°	2.6°
C10	C2	N3	C4	168.3°	168.3°
C2	C10	C11	N15	178.0°	178.0°
C2	C10	C11	C12	179.1°	179.1°
C2	C10	N15	N13	179.3°	179.3°
C10	C2	N3	H3	11.7°	11.7°
C2	C10	C11	H11	0.9°	0.9°
N3	C4	C5	C9	179.6°	179.6°
N3	C4	C5	C6	179.8°	179.8°
N3	C4	C9	C8	179.7°	179.7°
N3	C4	C5	H5	0.1°	0.1°
N3	C4	C9	H9	0.3°	0.3°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	C7	0.4°	0.4°
C5	C4	C9	C8	0.8°	0.8°
C5	C4	N3	H3	142.3°	142.3°
C5	C4	C9	H9	179.2°	179.2°
C4	C5	C6	H6	179.6°	179.6°
C9	C4	C5	C6	0.6°	0.6°
C4	C9	C8	C7	0.7°	0.7°
C4	C9	C8	H9	180.0°	180.0°
C9	C4	N3	H3	37.3°	37.3°
C9	C4	C5	H5	179.4°	179.4°
C4	C9	C8	H8	179.3°	179.3°
C5	C6	C7	H6	180.0°	180.0°
C5	C6	C7	C8	0.3°	0.3°
C5	C6	C7	H7	179.7°	179.7°
C6	C7	C8	H7	180.0°	180.0°
C6	C7	C8	C9	0.5°	0.5°
C7	C6	C5	H5	179.6°	179.6°
C6	C7	C8	H8	179.5°	179.5°
C7	C8	C9	H8	180.0°	180.0°
C7	C8	C9	H9	179.3°	179.3°
C8	C7	C6	H6	179.7°	179.7°
C9	C8	C7	H7	179.5°	179.5°
C10	C11	C12	H11	180.0°	180.0°
C10	C11	C12	N13	0.5°	0.5°
C11	C10	N15	N13	1.2°	1.2°
C10	C11	C12	H12	179.5°	179.4°
N15	C10	C11	C12	1.1°	1.1°
C10	N15	N13	C12	0.8°	0.8°
N15	C10	C11	H11	178.9°	178.9°
C10	N15	N13	H13	179.2°	179.2°
C11	C12	N13	H12	180.0°	180.0°
C11	C12	N13	N15	0.2°	0.2°
C11	C12	N13	H13	179.8°	179.8°
C12	N13	N15	H13	180.0°	180.0°
N13	C12	C11	H11	179.5°	179.5°
N15	N13	C12	H12	179.8°	179.9°
H5	C5	C6	H6	0.4°	0.4°
H9	C9	C8	H8	0.7°	0.7°
H6	C6	C7	H7	0.3°	0.3°
H7	C7	C8	H8	0.5°	0.5°
H11	C11	C12	H12	0.5°	0.6°
H13	N13	C12	H12	0.2°	0.2°

246704

PDB entries from 2025-12-24

PDB statistics

PDBj update info

Contact PDBj

numon