LYZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.45Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| CA | HA | sing | 1.09Å | 1.11Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| CB | CG | sing | 1.53Å | 1.52Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CB | HB3 | sing | 1.09Å | 1.12Å | |
| CG | CD | sing | 1.53Å | 1.52Å | |
| CG | HG2 | sing | 1.09Å | 1.12Å | |
| CG | HG3 | sing | 1.09Å | 1.12Å | |
| CD | CE | sing | 1.53Å | 1.52Å | |
| CD | OH | sing | 1.43Å | 1.45Å | |
| CD | HD | sing | 1.09Å | 1.12Å | |
| CE | NZ | sing | 1.47Å | 1.50Å | |
| CE | HE2 | sing | 1.09Å | 1.12Å | |
| CE | HE3 | sing | 1.09Å | 1.12Å | |
| NZ | HZ1 | sing | 1.01Å | 1.02Å | |
| NZ | HZ2 | sing | 1.01Å | 1.02Å | |
| OH | HH | sing | 0.97Å | 0.95Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 114.0° | 106.7° |
| CA | N | H2 | 110.5° | 106.7° |
| N | CA | C | 114.0° | 109.4° |
| N | CA | CB | 111.9° | 109.5° |
| N | CA | HA | 104.8° | 109.4° |
| H | N | H2 | 110.6° | 106.7° |
| C | CA | CB | 110.6° | 109.6° |
| C | CA | HA | 106.3° | 109.4° |
| CA | C | O | 120.3° | 120.0° |
| CA | C | OXT | 118.9° | 120.0° |
| CB | CA | HA | 108.7° | 109.5° |
| CA | CB | CG | 113.4° | 109.5° |
| CA | CB | HB2 | 110.8° | 109.5° |
| CA | CB | HB3 | 110.7° | 109.5° |
| O | C | OXT | 120.6° | 119.9° |
| C | OXT | HXT | 118.9° | 120.0° |
| CG | CB | HB2 | 110.8° | 109.5° |
| CG | CB | HB3 | 110.8° | 109.4° |
| CB | CG | CD | 112.4° | 109.5° |
| CB | CG | HG2 | 111.1° | 109.5° |
| CB | CG | HG3 | 111.1° | 109.5° |
| HB2 | CB | HB3 | 99.5° | 109.4° |
| CD | CG | HG2 | 111.2° | 109.4° |
| CD | CG | HG3 | 111.2° | 109.4° |
| CG | CD | CE | 110.7° | 109.5° |
| CG | CD | OH | 98.6° | 109.5° |
| CG | CD | HD | 113.2° | 109.5° |
| HG2 | CG | HG3 | 99.2° | 109.5° |
| CE | CD | OH | 101.6° | 109.4° |
| CE | CD | HD | 110.7° | 109.5° |
| CD | CE | NZ | 109.0° | 109.6° |
| CD | CE | HE2 | 112.3° | 109.4° |
| CD | CE | HE3 | 112.3° | 109.5° |
| OH | CD | HD | 120.9° | 109.5° |
| CD | OH | HH | 98.7° | 106.8° |
| NZ | CE | HE2 | 112.4° | 109.4° |
| NZ | CE | HE3 | 112.4° | 109.5° |
| CE | NZ | HZ1 | 109.0° | 106.8° |
| CE | NZ | HZ2 | 112.3° | 106.8° |
| HE2 | CE | HE3 | 98.1° | 109.5° |
| HZ1 | NZ | HZ2 | 112.5° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.3° | 113.8° |
| N | CA | C | CB | 127.2° | 120.0° |
| N | CA | C | HA | 115.0° | 119.9° |
| N | CA | CB | HA | 115.3° | 119.9° |
| N | CA | C | O | 173.0° | 30.1° |
| N | CA | C | OXT | 12.5° | 150.0° |
| N | CA | CB | CG | 58.8° | 60.0° |
| N | CA | CB | HB2 | 66.5° | 179.9° |
| N | CA | CB | HB3 | 175.9° | 60.1° |
| H | N | CA | C | 180.0° | 173.8° |
| H | N | CA | CB | 53.5° | 53.7° |
| H | N | CA | HA | 64.1° | 66.2° |
| H2 | N | CA | C | 54.7° | 60.0° |
| H2 | N | CA | CB | 71.8° | 60.1° |
| H2 | N | CA | HA | 170.5° | 180.0° |
| C | CA | CB | HA | 116.4° | 120.0° |
| CA | C | O | OXT | 174.4° | 179.9° |
| C | CA | CB | CG | 172.9° | 180.0° |
| C | CA | CB | HB2 | 61.8° | 59.9° |
| C | CA | CB | HB3 | 47.6° | 60.0° |
| CA | C | OXT | HXT | 179.9° | 179.9° |
| CB | CA | C | O | 45.8° | 89.9° |
| CB | CA | C | OXT | 139.7° | 89.9° |
| CA | CB | CG | HB2 | 125.3° | 120.1° |
| CA | CB | CG | HB3 | 125.3° | 120.0° |
| CA | CB | HB2 | HB3 | 116.6° | 120.0° |
| CA | CB | CG | CD | 158.2° | 180.0° |
| CA | CB | CG | HG2 | 76.5° | 60.0° |
| CA | CB | CG | HG3 | 32.9° | 60.0° |
| HA | CA | C | O | 72.0° | 150.0° |
| HA | CA | C | OXT | 102.4° | 30.1° |
| HA | CA | CB | CG | 56.6° | 60.0° |
| HA | CA | CB | HB2 | 178.2° | 60.1° |
| HA | CA | CB | HB3 | 68.7° | 180.0° |
| O | C | OXT | HXT | 5.5° | 0.0° |
| CG | CB | HB2 | HB3 | 116.7° | 119.9° |
| CB | CG | CD | HG2 | 125.3° | 120.0° |
| CB | CG | CD | HG3 | 125.3° | 120.0° |
| CB | CG | HG2 | HG3 | 116.9° | 120.0° |
| CB | CG | CD | CE | 177.8° | 179.9° |
| CB | CG | CD | OH | 71.8° | 60.0° |
| CB | CG | CD | HD | 57.3° | 60.0° |
| HB2 | CB | CG | CD | 32.9° | 59.9° |
| HB2 | CB | CG | HG2 | 158.2° | 180.0° |
| HB2 | CB | CG | HG3 | 92.4° | 60.1° |
| HB3 | CB | CG | CD | 76.6° | 59.9° |
| HB3 | CB | CG | HG2 | 48.7° | 60.1° |
| HB3 | CB | CG | HG3 | 158.1° | 179.9° |
| CD | CG | HG2 | HG3 | 117.0° | 120.0° |
| CG | CD | CE | OH | 104.0° | 120.0° |
| CG | CD | CE | HD | 126.3° | 120.1° |
| CG | CD | OH | HD | 123.7° | 120.0° |
| CG | CD | CE | NZ | 173.3° | 180.0° |
| CG | CD | CE | HE2 | 48.1° | 60.1° |
| CG | CD | CE | HE3 | 61.4° | 59.9° |
| CG | CD | OH | HH | 179.9° | 59.9° |
| HG2 | CG | CD | CE | 52.5° | 60.0° |
| HG2 | CG | CD | OH | 53.5° | 180.0° |
| HG2 | CG | CD | HD | 177.4° | 60.1° |
| HG3 | CG | CD | CE | 57.0° | 59.9° |
| HG3 | CG | CD | OH | 163.0° | 60.0° |
| HG3 | CG | CD | HD | 68.0° | 180.0° |
| CE | CD | OH | HD | 123.0° | 120.0° |
| CD | CE | NZ | HE2 | 125.2° | 119.9° |
| CD | CE | NZ | HE3 | 125.2° | 120.1° |
| CD | CE | HE2 | HE3 | 118.3° | 120.0° |
| CD | CE | NZ | HZ1 | 180.0° | 180.0° |
| CD | CE | NZ | HZ2 | 54.7° | 66.1° |
| CE | CD | OH | HH | 66.7° | 60.1° |
| OH | CD | CE | NZ | 69.4° | 60.0° |
| OH | CD | CE | HE2 | 55.9° | 180.0° |
| OH | CD | CE | HE3 | 165.4° | 60.0° |
| HD | CD | CE | NZ | 60.3° | 59.9° |
| HD | CD | CE | HE2 | 174.4° | 60.0° |
| HD | CD | CE | HE3 | 64.9° | 180.0° |
| HD | CD | OH | HH | 56.2° | 180.0° |
| NZ | CE | HE2 | HE3 | 118.3° | 119.9° |
| CE | NZ | HZ1 | HZ2 | 125.2° | 113.9° |
| HE2 | CE | NZ | HZ1 | 54.8° | 60.1° |
| HE2 | CE | NZ | HZ2 | 70.5° | 53.8° |
| HE3 | CE | NZ | HZ1 | 54.8° | 59.9° |
| HE3 | CE | NZ | HZ2 | 179.9° | 173.8° |
