LYU
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| N | HN | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| CA | C | sing | 1.51Å | 1.50Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | CG | sing | 1.53Å | 1.55Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CB | HBA | sing | 1.09Å | 1.10Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| CG | HGA | sing | 1.09Å | 1.10Å | |
| CD | CG | sing | 1.53Å | 1.53Å | |
| CD | CE | sing | 1.53Å | 1.54Å | |
| CD | HD | sing | 1.09Å | 1.10Å | |
| CD | HDA | sing | 1.09Å | 1.10Å | |
| CE | HE | sing | 1.09Å | 1.10Å | |
| CE | HEA | sing | 1.09Å | 1.10Å | |
| NZ | CE | sing | 1.47Å | 1.44Å | |
| NZ | C1' | sing | 1.47Å | 1.45Å | |
| NZ | HNZ | sing | 1.01Å | 1.00Å | |
| C1' | C2' | sing | 1.53Å | 1.54Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C1' | H1'A | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.53Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| C3' | C4' | sing | 1.53Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C3' | H3'A | sing | 1.09Å | 1.10Å | |
| C4' | C6' | sing | 1.53Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C5' | H5'B | sing | 1.09Å | 1.10Å | |
| C6' | H6' | sing | 1.09Å | 1.10Å | |
| C6' | H6'A | sing | 1.09Å | 1.10Å | |
| C6' | H6'B | sing | 1.09Å | 1.10Å | |
| C | O | doub | 1.21Å | 1.22Å | |
| C | OXT | sing | 1.34Å | 1.43Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | HN | 109.5° | 111.0° |
| CA | N | H2 | 109.4° | 111.0° |
| N | CA | CB | 108.0° | 109.5° |
| N | CA | C | 107.6° | 109.5° |
| N | CA | HA | 112.3° | 109.5° |
| HN | N | H2 | 109.5° | 111.0° |
| CB | CA | C | 111.2° | 109.5° |
| CB | CA | HA | 108.7° | 109.5° |
| CA | CB | CG | 114.5° | 109.5° |
| CA | CB | HB | 107.8° | 109.5° |
| CA | CB | HBA | 107.8° | 109.5° |
| C | CA | HA | 109.1° | 109.5° |
| CA | C | O | 119.2° | 120.0° |
| CA | C | OXT | 120.4° | 120.0° |
| CG | CB | HB | 107.8° | 109.5° |
| CG | CB | HBA | 107.8° | 109.4° |
| CB | CG | HG | 107.9° | 109.5° |
| CB | CG | HGA | 108.0° | 109.4° |
| CB | CG | CD | 114.0° | 109.5° |
| HB | CB | HBA | 111.1° | 109.5° |
| HG | CG | HGA | 111.0° | 109.5° |
| HG | CG | CD | 108.0° | 109.5° |
| HGA | CG | CD | 108.0° | 109.5° |
| CG | CD | CE | 111.5° | 109.5° |
| CG | CD | HD | 108.8° | 109.5° |
| CG | CD | HDA | 108.8° | 109.5° |
| CE | CD | HD | 108.8° | 109.4° |
| CE | CD | HDA | 108.8° | 109.5° |
| CD | CE | HE | 108.1° | 109.4° |
| CD | CE | HEA | 108.1° | 109.5° |
| CD | CE | NZ | 113.6° | 109.5° |
| HD | CD | HDA | 110.1° | 109.4° |
| HE | CE | HEA | 110.8° | 109.5° |
| HE | CE | NZ | 108.1° | 109.4° |
| HEA | CE | NZ | 108.1° | 109.5° |
| CE | NZ | C1' | 124.9° | 111.0° |
| CE | NZ | HNZ | 104.6° | 110.9° |
| C1' | NZ | HNZ | 104.6° | 111.0° |
| NZ | C1' | C2' | 114.1° | 109.5° |
| NZ | C1' | H1' | 108.0° | 109.5° |
| NZ | C1' | H1'A | 108.0° | 109.5° |
| C2' | C1' | H1' | 107.9° | 109.4° |
| C2' | C1' | H1'A | 108.0° | 109.4° |
| C1' | C2' | C3' | 113.9° | 109.5° |
| C1' | C2' | H2' | 108.0° | 109.4° |
| C1' | C2' | H2'A | 108.0° | 109.5° |
| H1' | C1' | H1'A | 110.9° | 109.5° |
| C3' | C2' | H2' | 108.1° | 109.4° |
| C3' | C2' | H2'A | 108.1° | 109.5° |
| C2' | C3' | C4' | 110.7° | 109.5° |
| C2' | C3' | H3' | 109.1° | 109.5° |
| C2' | C3' | H3'A | 109.1° | 109.4° |
| H2' | C2' | H2'A | 110.9° | 109.4° |
| C4' | C3' | H3' | 109.1° | 109.5° |
| C4' | C3' | H3'A | 109.1° | 109.5° |
| C3' | C4' | C6' | 108.8° | 109.4° |
| C3' | C4' | C5' | 113.0° | 109.5° |
| C3' | C4' | H4' | 107.7° | 109.5° |
| H3' | C3' | H3'A | 109.9° | 109.4° |
| C6' | C4' | C5' | 110.0° | 109.5° |
| C6' | C4' | H4' | 110.8° | 109.5° |
| C4' | C6' | H6' | 109.5° | 109.5° |
| C4' | C6' | H6'A | 109.5° | 109.4° |
| C4' | C6' | H6'B | 109.5° | 109.5° |
| C5' | C4' | H4' | 106.4° | 109.5° |
| C4' | C5' | H5' | 109.5° | 109.4° |
| C4' | C5' | H5'A | 109.5° | 109.4° |
| C4' | C5' | H5'B | 109.5° | 109.5° |
| H5' | C5' | H5'A | 109.5° | 109.5° |
| H5' | C5' | H5'B | 109.4° | 109.6° |
| H5'A | C5' | H5'B | 109.5° | 109.5° |
| H6' | C6' | H6'A | 109.5° | 109.5° |
| H6' | C6' | H6'B | 109.5° | 109.5° |
| H6'A | C6' | H6'B | 109.5° | 109.5° |
| O | C | OXT | 120.4° | 120.0° |
| C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | HN | H2 | 120.0° | 123.9° |
| N | CA | CB | C | 117.8° | 120.0° |
| N | CA | CB | HA | 122.1° | 120.0° |
| N | CA | C | HA | 122.1° | 120.0° |
| N | CA | CB | CG | 169.9° | 65.0° |
| N | CA | CB | HB | 70.1° | 55.0° |
| N | CA | CB | HBA | 49.9° | 175.1° |
| N | CA | C | O | 36.8° | 20.0° |
| N | CA | C | OXT | 143.2° | 160.0° |
| HN | N | CA | CB | 180.0° | 176.1° |
| HN | N | CA | C | 59.9° | 63.9° |
| HN | N | CA | HA | 60.2° | 56.1° |
| H2 | N | CA | CB | 60.0° | 60.0° |
| H2 | N | CA | C | 60.1° | 60.0° |
| H2 | N | CA | HA | 179.8° | 180.0° |
| CB | CA | C | HA | 119.9° | 120.0° |
| CA | CB | CG | HB | 120.0° | 120.0° |
| CA | CB | CG | HBA | 120.0° | 120.0° |
| CA | CB | HB | HBA | 117.9° | 120.0° |
| CA | CB | CG | HG | 72.1° | 60.0° |
| CA | CB | CG | HGA | 47.9° | 60.0° |
| CA | CB | CG | CD | 167.9° | NaN° |
| CB | CA | C | O | 81.2° | 100.0° |
| CB | CA | C | OXT | 98.8° | 80.0° |
| C | CA | CB | CG | 52.0° | 175.0° |
| C | CA | CB | HB | 172.0° | 65.0° |
| C | CA | CB | HBA | 68.0° | 55.0° |
| CA | C | O | OXT | 180.0° | 180.0° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| HA | CA | CB | CG | 68.1° | 55.0° |
| HA | CA | CB | HB | 51.9° | 175.0° |
| HA | CA | CB | HBA | 171.9° | 65.0° |
| HA | CA | C | O | 158.9° | 140.0° |
| HA | CA | C | OXT | 21.1° | 40.0° |
| CG | CB | HB | HBA | 118.0° | 119.9° |
| CB | CG | HG | HGA | 118.1° | 119.9° |
| CB | CG | HG | CD | 123.7° | 120.0° |
| CB | CG | HGA | CD | 123.7° | 120.0° |
| CB | CG | CD | CE | 163.4° | 180.0° |
| CB | CG | CD | HD | 76.6° | 60.0° |
| CB | CG | CD | HDA | 43.4° | 60.0° |
| HB | CB | CG | HG | 167.9° | NaN° |
| HB | CB | CG | HGA | 72.1° | 60.0° |
| HB | CB | CG | CD | 47.9° | 60.0° |
| HBA | CB | CG | HG | 47.8° | 60.0° |
| HBA | CB | CG | HGA | 167.9° | 180.0° |
| HBA | CB | CG | CD | 72.2° | 60.0° |
| HG | CG | HGA | CD | 118.2° | 120.0° |
| HG | CG | CD | CE | 43.4° | 60.0° |
| HG | CG | CD | HD | 163.4° | 180.0° |
| HG | CG | CD | HDA | 76.6° | 60.0° |
| HGA | CG | CD | CE | 76.6° | 60.0° |
| HGA | CG | CD | HD | 43.4° | 60.0° |
| HGA | CG | CD | HDA | 163.3° | 179.9° |
| CG | CD | CE | HD | 120.0° | 120.0° |
| CG | CD | CE | HDA | 120.0° | 120.0° |
| CG | CD | HD | HDA | 119.2° | 120.0° |
| CG | CD | CE | HE | 57.4° | 60.0° |
| CG | CD | CE | HEA | 62.6° | 60.0° |
| CG | CD | CE | NZ | 177.4° | 180.0° |
| CE | CD | HD | HDA | 119.2° | 120.0° |
| CD | CE | HE | HEA | 118.3° | 120.0° |
| CD | CE | HE | NZ | 123.4° | 119.9° |
| CD | CE | HEA | NZ | 123.4° | 120.0° |
| CD | CE | NZ | C1' | 168.2° | 180.0° |
| CD | CE | NZ | HNZ | 71.8° | 56.1° |
| HD | CD | CE | HE | 177.4° | 180.0° |
| HD | CD | CE | HEA | 57.4° | 60.0° |
| HD | CD | CE | NZ | 62.6° | 60.0° |
| HDA | CD | CE | HE | 62.6° | 60.0° |
| HDA | CD | CE | HEA | 177.4° | 180.0° |
| HDA | CD | CE | NZ | 57.4° | 59.9° |
| HE | CE | HEA | NZ | 118.3° | 120.0° |
| HE | CE | NZ | C1' | 48.3° | 60.1° |
| HE | CE | NZ | HNZ | 168.3° | 176.0° |
| HEA | CE | NZ | C1' | 71.7° | 59.9° |
| HEA | CE | NZ | HNZ | 48.2° | 64.0° |
| CE | NZ | C1' | HNZ | 120.0° | 123.9° |
| CE | NZ | C1' | C2' | 20.3° | 180.0° |
| CE | NZ | C1' | H1' | 140.3° | 60.0° |
| CE | NZ | C1' | H1'A | 99.7° | 60.0° |
| NZ | C1' | C2' | H1' | 120.0° | 120.0° |
| NZ | C1' | C2' | H1'A | 120.0° | 120.1° |
| NZ | C1' | H1' | H1'A | 118.1° | 120.0° |
| NZ | C1' | C2' | C3' | 121.6° | 180.0° |
| NZ | C1' | C2' | H2' | 118.4° | 60.0° |
| NZ | C1' | C2' | H2'A | 1.5° | 59.9° |
| HNZ | NZ | C1' | C2' | 99.7° | 56.1° |
| HNZ | NZ | C1' | H1' | 20.3° | 176.1° |
| HNZ | NZ | C1' | H1'A | 140.3° | 63.9° |
| C2' | C1' | H1' | H1'A | 118.1° | 119.9° |
| C1' | C2' | C3' | H2' | 120.0° | 120.0° |
| C1' | C2' | C3' | H2'A | 120.0° | 120.1° |
| C1' | C2' | H2' | H2'A | 118.2° | 120.0° |
| C1' | C2' | C3' | C4' | 160.9° | 180.0° |
| C1' | C2' | C3' | H3' | 79.1° | 60.0° |
| C1' | C2' | C3' | H3'A | 40.9° | 60.0° |
| H1' | C1' | C2' | C3' | 1.5° | 60.0° |
| H1' | C1' | C2' | H2' | 121.6° | 180.0° |
| H1' | C1' | C2' | H2'A | 118.5° | 60.0° |
| H1'A | C1' | C2' | C3' | 118.4° | 60.0° |
| H1'A | C1' | C2' | H2' | 1.6° | 60.0° |
| H1'A | C1' | C2' | H2'A | 121.6° | 180.0° |
| C3' | C2' | H2' | H2'A | 118.2° | 120.0° |
| C2' | C3' | C4' | H3' | 120.0° | 120.0° |
| C2' | C3' | C4' | H3'A | 120.0° | 120.0° |
| C2' | C3' | H3' | H3'A | 119.5° | 119.9° |
| C2' | C3' | C4' | C6' | 124.6° | 175.0° |
| C2' | C3' | C4' | C5' | 112.9° | 65.0° |
| C2' | C3' | C4' | H4' | 4.4° | 55.0° |
| H2' | C2' | C3' | C4' | 40.9° | 60.0° |
| H2' | C2' | C3' | H3' | 160.9° | 180.0° |
| H2' | C2' | C3' | H3'A | 79.1° | 60.0° |
| H2'A | C2' | C3' | C4' | 79.1° | 60.0° |
| H2'A | C2' | C3' | H3' | 40.9° | 60.1° |
| H2'A | C2' | C3' | H3'A | 160.9° | 180.0° |
| C4' | C3' | H3' | H3'A | 119.5° | 120.0° |
| C3' | C4' | C6' | C5' | 124.3° | 120.0° |
| C3' | C4' | C6' | H4' | 118.3° | 120.0° |
| C3' | C4' | C5' | H4' | 118.0° | 120.1° |
| C3' | C4' | C5' | H5' | 180.0° | 180.0° |
| C3' | C4' | C5' | H5'A | 60.0° | 60.1° |
| C3' | C4' | C5' | H5'B | 60.0° | 59.9° |
| C3' | C4' | C6' | H6' | 180.0° | 60.0° |
| C3' | C4' | C6' | H6'A | 60.0° | 180.0° |
| C3' | C4' | C6' | H6'B | 60.0° | 60.0° |
| H3' | C3' | C4' | C6' | 4.6° | 65.0° |
| H3' | C3' | C4' | C5' | 127.1° | 55.0° |
| H3' | C3' | C4' | H4' | 115.6° | 175.1° |
| H3'A | C3' | C4' | C6' | 115.4° | 55.0° |
| H3'A | C3' | C4' | C5' | 7.1° | 175.0° |
| H3'A | C3' | C4' | H4' | 124.4° | 65.0° |
| C6' | C4' | C5' | H4' | 120.1° | 120.0° |
| C6' | C4' | C5' | H5' | 58.2° | 60.1° |
| C6' | C4' | C5' | H5'A | 61.8° | 180.0° |
| C6' | C4' | C5' | H5'B | 178.2° | 60.0° |
| C4' | C6' | H6' | H6'A | 120.0° | 120.0° |
| C4' | C6' | H6' | H6'B | 120.0° | 120.0° |
| C4' | C6' | H6'A | H6'B | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'A | 120.0° | 119.9° |
| C4' | C5' | H5' | H5'B | 120.0° | 120.0° |
| C4' | C5' | H5'A | H5'B | 120.0° | 120.0° |
| C5' | C4' | C6' | H6' | 55.7° | 180.0° |
| C5' | C4' | C6' | H6'A | 175.7° | 60.0° |
| C5' | C4' | C6' | H6'B | 64.3° | 60.0° |
| H4' | C4' | C5' | H5' | 61.9° | 59.9° |
| H4' | C4' | C5' | H5'A | 178.1° | 60.0° |
| H4' | C4' | C5' | H5'B | 58.0° | 180.0° |
| H4' | C4' | C6' | H6' | 61.8° | 60.0° |
| H4' | C4' | C6' | H6'A | 58.3° | 60.0° |
| H4' | C4' | C6' | H6'B | 178.3° | 180.0° |
| H5' | C5' | H5'A | H5'B | 119.9° | 120.1° |
| H6' | C6' | H6'A | H6'B | 120.0° | 120.1° |
| O | C | OXT | HXT | 0.0° | 0.1° |
